data_3E8F # _model_server_result.job_id a7BsULj8-hNQ1nsyks7dmA _model_server_result.datetime_utc '2025-04-11 19:14:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3e8f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":4}' # _entry.id 3E8F # _exptl.entry_id 3E8F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 137.327 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BARIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3E8F _cell.length_a 68.226 _cell.length_b 68.226 _cell.length_c 89.548 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3E8F _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,O 1 1,2,3,4 B,I,J,K,L,M,N,P 2 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_445 -x-1,-y-1,z -1 0 0 0 -1 0 0 0 1 -68.226 -68.226 0 3 'crystal symmetry operation' 3_455 -y-1,x,z 0 -1 0 1 0 0 0 0 1 -68.226 0 0 4 'crystal symmetry operation' 4_545 y,-x-1,z 0 1 0 -1 0 0 0 0 1 0 -68.226 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 J N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 G K K . A K 6 1_555 A OG1 THR 45 A THR 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.742 ? metalc ? metalc2 H K K . A K 9 1_555 O O HOH . A HOH 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.832 ? metalc ? metalc3 L K K . B K 7 1_555 B O THR 45 B THR 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.995 ? metalc ? metalc4 L K K . B K 7 1_555 B OG1 THR 45 B THR 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.834 ? metalc ? metalc5 M K K . B K 8 1_555 P O HOH . B HOH 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.953 ? metalc ? metalc6 N K K . B K 10 1_555 P O HOH . B HOH 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.893 ? # _chem_comp.formula 'Ba 2' _chem_comp.formula_weight 137.327 _chem_comp.id BA _chem_comp.mon_nstd_flag . _chem_comp.name 'BARIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3E8F _atom_sites.fract_transf_matrix[1][1] 0.014657 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014657 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011167 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MPD A 1 501 501 MPD MPD . D 3 BA A 1 1 1 BA BA . E 3 BA A 1 3 3 BA BA . F 4 K A 1 5 5 K K . G 4 K A 1 6 6 K K . H 4 K A 1 9 9 K K . I 2 MPD B 1 502 502 MPD MPD . J 3 BA B 1 2 2 BA BA . K 3 BA B 1 4 4 BA BA . L 4 K B 1 7 7 K K . M 4 K B 1 8 8 K K . N 4 K B 1 10 10 K K . O 5 HOH A 1 502 2 HOH HOH . O 5 HOH A 2 503 3 HOH HOH . O 5 HOH A 3 504 4 HOH HOH . O 5 HOH A 4 505 6 HOH HOH . O 5 HOH A 5 506 7 HOH HOH . O 5 HOH A 6 507 8 HOH HOH . O 5 HOH A 7 508 11 HOH HOH . O 5 HOH A 8 509 12 HOH HOH . O 5 HOH A 9 510 13 HOH HOH . O 5 HOH A 10 511 17 HOH HOH . O 5 HOH A 11 512 18 HOH HOH . O 5 HOH A 12 514 20 HOH HOH . O 5 HOH A 13 515 24 HOH HOH . O 5 HOH A 14 516 26 HOH HOH . O 5 HOH A 15 517 27 HOH HOH . O 5 HOH A 16 518 30 HOH HOH . O 5 HOH A 17 519 33 HOH HOH . O 5 HOH A 18 520 34 HOH HOH . O 5 HOH A 19 521 35 HOH HOH . O 5 HOH A 20 522 36 HOH HOH . O 5 HOH A 21 523 38 HOH HOH . O 5 HOH A 22 524 39 HOH HOH . O 5 HOH A 23 525 40 HOH HOH . O 5 HOH A 24 526 42 HOH HOH . O 5 HOH A 25 527 44 HOH HOH . O 5 HOH A 26 528 45 HOH HOH . O 5 HOH A 27 529 46 HOH HOH . O 5 HOH A 28 530 47 HOH HOH . O 5 HOH A 29 531 50 HOH HOH . O 5 HOH A 30 532 52 HOH HOH . O 5 HOH A 31 533 55 HOH HOH . O 5 HOH A 32 535 57 HOH HOH . P 5 HOH B 1 513 19 HOH HOH . P 5 HOH B 2 514 56 HOH HOH . P 5 HOH B 3 515 1 HOH HOH . P 5 HOH B 4 516 5 HOH HOH . P 5 HOH B 5 517 9 HOH HOH . P 5 HOH B 6 518 10 HOH HOH . P 5 HOH B 7 519 14 HOH HOH . P 5 HOH B 8 520 15 HOH HOH . P 5 HOH B 9 521 16 HOH HOH . P 5 HOH B 10 522 21 HOH HOH . P 5 HOH B 11 523 22 HOH HOH . P 5 HOH B 12 524 23 HOH HOH . P 5 HOH B 13 525 25 HOH HOH . P 5 HOH B 14 526 28 HOH HOH . P 5 HOH B 15 527 29 HOH HOH . P 5 HOH B 16 528 31 HOH HOH . P 5 HOH B 17 529 32 HOH HOH . P 5 HOH B 18 530 37 HOH HOH . P 5 HOH B 19 531 41 HOH HOH . P 5 HOH B 20 532 43 HOH HOH . P 5 HOH B 21 533 48 HOH HOH . P 5 HOH B 22 534 49 HOH HOH . P 5 HOH B 23 535 51 HOH HOH . P 5 HOH B 24 536 53 HOH HOH . P 5 HOH B 25 537 54 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol BA _atom_site.label_atom_id BA _atom_site.label_comp_id BA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id K _atom_site.label_entity_id 3 _atom_site.Cartn_x -34.113 _atom_site.Cartn_y -34.113 _atom_site.Cartn_z 26.525 _atom_site.occupancy 0.25 _atom_site.B_iso_or_equiv 59.5 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id BA _atom_site.auth_comp_id BA _atom_site.auth_seq_id 4 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #