data_3E8J # _model_server_result.job_id Gu68d1b-RDDXu1XOoO8ZXA _model_server_result.datetime_utc '2025-01-10 20:09:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3e8j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":303}' # _entry.id 3E8J # _exptl.entry_id 3E8J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3E8J _cell.length_a 56.097 _cell.length_b 73.147 _cell.length_c 184.745 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3E8J _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 H N N ? 3 I N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 135 n n C1 C2 GOL sing 136 n n C1 H11 GOL sing 137 n n C1 H12 GOL sing 138 n n O1 HO1 GOL sing 139 n n C2 O2 GOL sing 140 n n C2 C3 GOL sing 141 n n C2 H2 GOL sing 142 n n O2 HO2 GOL sing 143 n n C3 O3 GOL sing 144 n n C3 H31 GOL sing 145 n n C3 H32 GOL sing 146 n n O3 HO3 GOL sing 147 n n # _atom_sites.entry_id 3E8J _atom_sites.fract_transf_matrix[1][1] 0.017826 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013671 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005413 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ACT A 1 302 1 ACT ACT . D 3 GOL A 1 303 2 GOL GOL . E 3 GOL A 1 304 3 GOL GOL . F 3 GOL A 1 305 4 GOL GOL . G 2 ACT B 1 302 2 ACT ACT . H 3 GOL B 1 303 1 GOL GOL . I 3 GOL B 1 304 5 GOL GOL . J 4 HOH A 1 306 1 HOH HOH . J 4 HOH A 2 307 3 HOH HOH . J 4 HOH A 3 308 5 HOH HOH . J 4 HOH A 4 309 6 HOH HOH . J 4 HOH A 5 310 9 HOH HOH . J 4 HOH A 6 311 10 HOH HOH . J 4 HOH A 7 312 13 HOH HOH . J 4 HOH A 8 313 14 HOH HOH . J 4 HOH A 9 314 16 HOH HOH . J 4 HOH A 10 315 17 HOH HOH . J 4 HOH A 11 316 19 HOH HOH . J 4 HOH A 12 317 20 HOH HOH . J 4 HOH A 13 318 21 HOH HOH . J 4 HOH A 14 319 22 HOH HOH . J 4 HOH A 15 320 25 HOH HOH . J 4 HOH A 16 321 28 HOH HOH . J 4 HOH A 17 322 32 HOH HOH . J 4 HOH A 18 323 34 HOH HOH . J 4 HOH A 19 324 35 HOH HOH . J 4 HOH A 20 325 37 HOH HOH . J 4 HOH A 21 326 38 HOH HOH . J 4 HOH A 22 327 40 HOH HOH . J 4 HOH A 23 328 41 HOH HOH . J 4 HOH A 24 329 42 HOH HOH . J 4 HOH A 25 330 44 HOH HOH . J 4 HOH A 26 331 47 HOH HOH . J 4 HOH A 27 332 50 HOH HOH . J 4 HOH A 28 333 52 HOH HOH . J 4 HOH A 29 334 55 HOH HOH . J 4 HOH A 30 335 58 HOH HOH . J 4 HOH A 31 336 59 HOH HOH . J 4 HOH A 32 337 60 HOH HOH . J 4 HOH A 33 338 61 HOH HOH . J 4 HOH A 34 339 62 HOH HOH . J 4 HOH A 35 340 67 HOH HOH . J 4 HOH A 36 341 68 HOH HOH . J 4 HOH A 37 342 69 HOH HOH . J 4 HOH A 38 343 70 HOH HOH . J 4 HOH A 39 344 71 HOH HOH . J 4 HOH A 40 345 72 HOH HOH . J 4 HOH A 41 346 74 HOH HOH . J 4 HOH A 42 347 76 HOH HOH . J 4 HOH A 43 348 81 HOH HOH . J 4 HOH A 44 349 82 HOH HOH . J 4 HOH A 45 350 84 HOH HOH . J 4 HOH A 46 351 89 HOH HOH . J 4 HOH A 47 352 90 HOH HOH . J 4 HOH A 48 353 91 HOH HOH . J 4 HOH A 49 354 92 HOH HOH . J 4 HOH A 50 355 95 HOH HOH . J 4 HOH A 51 356 96 HOH HOH . J 4 HOH A 52 357 98 HOH HOH . J 4 HOH A 53 358 100 HOH HOH . J 4 HOH A 54 359 101 HOH HOH . J 4 HOH A 55 360 102 HOH HOH . J 4 HOH A 56 361 103 HOH HOH . J 4 HOH A 57 362 104 HOH HOH . J 4 HOH A 58 363 106 HOH HOH . J 4 HOH A 59 364 107 HOH HOH . J 4 HOH A 60 365 108 HOH HOH . J 4 HOH A 61 366 110 HOH HOH . J 4 HOH A 62 367 112 HOH HOH . J 4 HOH A 63 368 116 HOH HOH . J 4 HOH A 64 369 117 HOH HOH . J 4 HOH A 65 370 118 HOH HOH . J 4 HOH A 66 371 119 HOH HOH . J 4 HOH A 67 372 121 HOH HOH . J 4 HOH A 68 373 122 HOH HOH . J 4 HOH A 69 374 124 HOH HOH . J 4 HOH A 70 375 125 HOH HOH . J 4 HOH A 71 376 126 HOH HOH . J 4 HOH A 72 377 130 HOH HOH . J 4 HOH A 73 378 131 HOH HOH . J 4 HOH A 74 379 132 HOH HOH . J 4 HOH A 75 380 134 HOH HOH . J 4 HOH A 76 381 135 HOH HOH . J 4 HOH A 77 382 139 HOH HOH . J 4 HOH A 78 383 140 HOH HOH . J 4 HOH A 79 384 141 HOH HOH . J 4 HOH A 80 385 143 HOH HOH . J 4 HOH A 81 386 144 HOH HOH . J 4 HOH A 82 387 145 HOH HOH . J 4 HOH A 83 388 146 HOH HOH . J 4 HOH A 84 389 147 HOH HOH . J 4 HOH A 85 390 150 HOH HOH . J 4 HOH A 86 391 152 HOH HOH . J 4 HOH A 87 392 153 HOH HOH . J 4 HOH A 88 393 154 HOH HOH . J 4 HOH A 89 394 156 HOH HOH . J 4 HOH A 90 395 160 HOH HOH . J 4 HOH A 91 396 161 HOH HOH . J 4 HOH A 92 397 162 HOH HOH . J 4 HOH A 93 398 164 HOH HOH . J 4 HOH A 94 399 168 HOH HOH . J 4 HOH A 95 400 169 HOH HOH . J 4 HOH A 96 401 170 HOH HOH . J 4 HOH A 97 402 171 HOH HOH . J 4 HOH A 98 403 175 HOH HOH . J 4 HOH A 99 404 179 HOH HOH . J 4 HOH A 100 405 180 HOH HOH . J 4 HOH A 101 406 181 HOH HOH . J 4 HOH A 102 407 182 HOH HOH . J 4 HOH A 103 408 183 HOH HOH . J 4 HOH A 104 409 186 HOH HOH . J 4 HOH A 105 410 187 HOH HOH . J 4 HOH A 106 411 188 HOH HOH . J 4 HOH A 107 412 189 HOH HOH . J 4 HOH A 108 413 192 HOH HOH . J 4 HOH A 109 414 194 HOH HOH . J 4 HOH A 110 415 196 HOH HOH . J 4 HOH A 111 416 200 HOH HOH . J 4 HOH A 112 417 203 HOH HOH . J 4 HOH A 113 418 204 HOH HOH . J 4 HOH A 114 419 205 HOH HOH . J 4 HOH A 115 420 208 HOH HOH . J 4 HOH A 116 421 210 HOH HOH . J 4 HOH A 117 422 211 HOH HOH . J 4 HOH A 118 423 212 HOH HOH . J 4 HOH A 119 424 213 HOH HOH . J 4 HOH A 120 425 214 HOH HOH . J 4 HOH A 121 426 217 HOH HOH . J 4 HOH A 122 427 221 HOH HOH . J 4 HOH A 123 428 222 HOH HOH . J 4 HOH A 124 429 223 HOH HOH . J 4 HOH A 125 430 225 HOH HOH . J 4 HOH A 126 431 226 HOH HOH . J 4 HOH A 127 432 227 HOH HOH . J 4 HOH A 128 433 228 HOH HOH . J 4 HOH A 129 434 232 HOH HOH . J 4 HOH A 130 435 233 HOH HOH . J 4 HOH A 131 436 234 HOH HOH . J 4 HOH A 132 437 235 HOH HOH . J 4 HOH A 133 438 236 HOH HOH . J 4 HOH A 134 439 244 HOH HOH . J 4 HOH A 135 440 249 HOH HOH . J 4 HOH A 136 441 250 HOH HOH . J 4 HOH A 137 442 252 HOH HOH . J 4 HOH A 138 443 255 HOH HOH . J 4 HOH A 139 444 257 HOH HOH . J 4 HOH A 140 445 259 HOH HOH . J 4 HOH A 141 446 260 HOH HOH . J 4 HOH A 142 447 261 HOH HOH . J 4 HOH A 143 448 262 HOH HOH . J 4 HOH A 144 449 266 HOH HOH . J 4 HOH A 145 450 267 HOH HOH . J 4 HOH A 146 451 268 HOH HOH . J 4 HOH A 147 452 269 HOH HOH . J 4 HOH A 148 453 271 HOH HOH . J 4 HOH A 149 454 274 HOH HOH . J 4 HOH A 150 455 276 HOH HOH . J 4 HOH A 151 456 278 HOH HOH . J 4 HOH A 152 457 281 HOH HOH . J 4 HOH A 153 458 283 HOH HOH . J 4 HOH A 154 459 284 HOH HOH . J 4 HOH A 155 460 291 HOH HOH . J 4 HOH A 156 461 293 HOH HOH . J 4 HOH A 157 462 299 HOH HOH . J 4 HOH A 158 463 301 HOH HOH . J 4 HOH A 159 464 302 HOH HOH . J 4 HOH A 160 465 306 HOH HOH . J 4 HOH A 161 466 307 HOH HOH . J 4 HOH A 162 467 166 HOH HOH . K 4 HOH B 1 305 2 HOH HOH . K 4 HOH B 2 306 4 HOH HOH . K 4 HOH B 3 307 7 HOH HOH . K 4 HOH B 4 308 8 HOH HOH . K 4 HOH B 5 309 11 HOH HOH . K 4 HOH B 6 310 12 HOH HOH . K 4 HOH B 7 311 15 HOH HOH . K 4 HOH B 8 312 18 HOH HOH . K 4 HOH B 9 313 23 HOH HOH . K 4 HOH B 10 314 24 HOH HOH . K 4 HOH B 11 315 26 HOH HOH . K 4 HOH B 12 316 27 HOH HOH . K 4 HOH B 13 317 29 HOH HOH . K 4 HOH B 14 318 30 HOH HOH . K 4 HOH B 15 319 31 HOH HOH . K 4 HOH B 16 320 33 HOH HOH . K 4 HOH B 17 321 36 HOH HOH . K 4 HOH B 18 322 39 HOH HOH . K 4 HOH B 19 323 43 HOH HOH . K 4 HOH B 20 324 45 HOH HOH . K 4 HOH B 21 325 46 HOH HOH . K 4 HOH B 22 326 48 HOH HOH . K 4 HOH B 23 327 49 HOH HOH . K 4 HOH B 24 328 51 HOH HOH . K 4 HOH B 25 329 53 HOH HOH . K 4 HOH B 26 330 54 HOH HOH . K 4 HOH B 27 331 56 HOH HOH . K 4 HOH B 28 332 57 HOH HOH . K 4 HOH B 29 333 63 HOH HOH . K 4 HOH B 30 334 64 HOH HOH . K 4 HOH B 31 335 65 HOH HOH . K 4 HOH B 32 336 66 HOH HOH . K 4 HOH B 33 337 73 HOH HOH . K 4 HOH B 34 338 75 HOH HOH . K 4 HOH B 35 339 77 HOH HOH . K 4 HOH B 36 340 78 HOH HOH . K 4 HOH B 37 341 79 HOH HOH . K 4 HOH B 38 342 80 HOH HOH . K 4 HOH B 39 343 83 HOH HOH . K 4 HOH B 40 344 85 HOH HOH . K 4 HOH B 41 345 86 HOH HOH . K 4 HOH B 42 346 87 HOH HOH . K 4 HOH B 43 347 88 HOH HOH . K 4 HOH B 44 348 93 HOH HOH . K 4 HOH B 45 349 94 HOH HOH . K 4 HOH B 46 350 97 HOH HOH . K 4 HOH B 47 351 99 HOH HOH . K 4 HOH B 48 352 105 HOH HOH . K 4 HOH B 49 353 109 HOH HOH . K 4 HOH B 50 354 111 HOH HOH . K 4 HOH B 51 355 113 HOH HOH . K 4 HOH B 52 356 114 HOH HOH . K 4 HOH B 53 357 115 HOH HOH . K 4 HOH B 54 358 120 HOH HOH . K 4 HOH B 55 359 123 HOH HOH . K 4 HOH B 56 360 127 HOH HOH . K 4 HOH B 57 361 128 HOH HOH . K 4 HOH B 58 362 129 HOH HOH . K 4 HOH B 59 363 133 HOH HOH . K 4 HOH B 60 364 136 HOH HOH . K 4 HOH B 61 365 137 HOH HOH . K 4 HOH B 62 366 138 HOH HOH . K 4 HOH B 63 367 142 HOH HOH . K 4 HOH B 64 368 148 HOH HOH . K 4 HOH B 65 369 149 HOH HOH . K 4 HOH B 66 370 151 HOH HOH . K 4 HOH B 67 371 155 HOH HOH . K 4 HOH B 68 372 157 HOH HOH . K 4 HOH B 69 373 158 HOH HOH . K 4 HOH B 70 374 159 HOH HOH . K 4 HOH B 71 375 163 HOH HOH . K 4 HOH B 72 376 165 HOH HOH . K 4 HOH B 73 378 167 HOH HOH . K 4 HOH B 74 379 172 HOH HOH . K 4 HOH B 75 380 173 HOH HOH . K 4 HOH B 76 381 174 HOH HOH . K 4 HOH B 77 382 176 HOH HOH . K 4 HOH B 78 383 177 HOH HOH . K 4 HOH B 79 384 178 HOH HOH . K 4 HOH B 80 385 184 HOH HOH . K 4 HOH B 81 386 185 HOH HOH . K 4 HOH B 82 387 190 HOH HOH . K 4 HOH B 83 388 191 HOH HOH . K 4 HOH B 84 389 193 HOH HOH . K 4 HOH B 85 390 195 HOH HOH . K 4 HOH B 86 391 197 HOH HOH . K 4 HOH B 87 392 198 HOH HOH . K 4 HOH B 88 393 199 HOH HOH . K 4 HOH B 89 394 201 HOH HOH . K 4 HOH B 90 395 202 HOH HOH . K 4 HOH B 91 396 206 HOH HOH . K 4 HOH B 92 397 207 HOH HOH . K 4 HOH B 93 398 209 HOH HOH . K 4 HOH B 94 399 215 HOH HOH . K 4 HOH B 95 400 216 HOH HOH . K 4 HOH B 96 401 218 HOH HOH . K 4 HOH B 97 402 219 HOH HOH . K 4 HOH B 98 403 220 HOH HOH . K 4 HOH B 99 404 224 HOH HOH . K 4 HOH B 100 405 229 HOH HOH . K 4 HOH B 101 406 230 HOH HOH . K 4 HOH B 102 407 231 HOH HOH . K 4 HOH B 103 408 237 HOH HOH . K 4 HOH B 104 409 238 HOH HOH . K 4 HOH B 105 410 239 HOH HOH . K 4 HOH B 106 411 240 HOH HOH . K 4 HOH B 107 412 241 HOH HOH . K 4 HOH B 108 413 242 HOH HOH . K 4 HOH B 109 414 243 HOH HOH . K 4 HOH B 110 415 245 HOH HOH . K 4 HOH B 111 416 246 HOH HOH . K 4 HOH B 112 417 247 HOH HOH . K 4 HOH B 113 418 248 HOH HOH . K 4 HOH B 114 419 251 HOH HOH . K 4 HOH B 115 420 253 HOH HOH . K 4 HOH B 116 421 254 HOH HOH . K 4 HOH B 117 422 256 HOH HOH . K 4 HOH B 118 423 258 HOH HOH . K 4 HOH B 119 424 263 HOH HOH . K 4 HOH B 120 425 264 HOH HOH . K 4 HOH B 121 426 265 HOH HOH . K 4 HOH B 122 427 270 HOH HOH . K 4 HOH B 123 428 272 HOH HOH . K 4 HOH B 124 429 273 HOH HOH . K 4 HOH B 125 430 275 HOH HOH . K 4 HOH B 126 431 277 HOH HOH . K 4 HOH B 127 432 279 HOH HOH . K 4 HOH B 128 433 280 HOH HOH . K 4 HOH B 129 434 282 HOH HOH . K 4 HOH B 130 435 285 HOH HOH . K 4 HOH B 131 436 286 HOH HOH . K 4 HOH B 132 437 287 HOH HOH . K 4 HOH B 133 438 288 HOH HOH . K 4 HOH B 134 439 289 HOH HOH . K 4 HOH B 135 440 290 HOH HOH . K 4 HOH B 136 441 292 HOH HOH . K 4 HOH B 137 442 294 HOH HOH . K 4 HOH B 138 443 295 HOH HOH . K 4 HOH B 139 444 296 HOH HOH . K 4 HOH B 140 445 297 HOH HOH . K 4 HOH B 141 446 298 HOH HOH . K 4 HOH B 142 447 300 HOH HOH . K 4 HOH B 143 448 303 HOH HOH . K 4 HOH B 144 449 304 HOH HOH . K 4 HOH B 145 450 305 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . A . H 3 55.944 81.324 3.249 0.5 59.17 ? C1 GOL 303 B 1 HETATM 2 C C1 GOL . B . H 3 55.272 82.492 3.036 0.5 76.19 ? C1 GOL 303 B 1 HETATM 3 O O1 GOL . A . H 3 56.762 82.286 2.619 0.5 60.63 ? O1 GOL 303 B 1 HETATM 4 O O1 GOL . B . H 3 56.056 82.94 4.118 0.5 75.77 ? O1 GOL 303 B 1 HETATM 5 C C2 GOL . A . H 3 54.476 81.653 3.007 0.5 59.17 ? C2 GOL 303 B 1 HETATM 6 C C2 GOL . B . H 3 54.506 81.237 3.437 0.5 76.48 ? C2 GOL 303 B 1 HETATM 7 O O2 GOL . A . H 3 54.345 82.433 1.839 0.5 58.47 ? O2 GOL 303 B 1 HETATM 8 O O2 GOL . B . H 3 55.274 80.473 4.339 0.5 76.28 ? O2 GOL 303 B 1 HETATM 9 C C3 GOL . A . H 3 53.678 80.362 2.864 0.5 60.08 ? C3 GOL 303 B 1 HETATM 10 C C3 GOL . B . H 3 54.186 80.411 2.197 0.5 77.36 ? C3 GOL 303 B 1 HETATM 11 O O3 GOL . A . H 3 52.335 80.575 3.246 0.5 60.78 ? O3 GOL 303 B 1 HETATM 12 O O3 GOL . B . H 3 52.789 80.251 2.08 0.5 78.53 ? O3 GOL 303 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 360 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 12 #