data_3E8L # _model_server_result.job_id y_k0YKPEEkurc0jS5X4Vdg _model_server_result.datetime_utc '2025-03-04 22:41:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3e8l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"AA","auth_seq_id":239}' # _entry.id 3E8L # _exptl.entry_id 3E8L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3E8L _cell.length_a 76.634 _cell.length_b 110.863 _cell.length_c 152.991 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3E8L _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 Z N N ? 8 AA N N ? 8 BA N N ? 8 CA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 51 C CYS 43 1_555 A SG CYS 97 C CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.828 ? disulf ? disulf2 A SG CYS 147 C CYS 139 1_555 A SG CYS 156 C CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf3 A SG CYS 149 C CYS 141 1_555 A SG CYS 152 C CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf4 B SG CYS 7 A CYS 22 1_555 B SG CYS 137 A CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 B SG CYS 25 A CYS 40 1_555 B SG CYS 41 A CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf6 B SG CYS 109 A CYS 124 1_555 B SG CYS 210 A CYS 225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf7 B SG CYS 116 A CYS 131 1_555 B SG CYS 183 A CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf8 B SG CYS 148 A CYS 163 1_555 B SG CYS 162 A CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf9 B SG CYS 173 A CYS 188 1_555 B SG CYS 197 A CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf10 C SG CYS 7 B CYS 22 1_555 C SG CYS 137 B CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf11 C SG CYS 25 B CYS 40 1_555 C SG CYS 41 B CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf12 C SG CYS 109 B CYS 124 1_555 C SG CYS 210 B CYS 225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf13 C SG CYS 116 B CYS 131 1_555 C SG CYS 183 B CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf14 C SG CYS 148 B CYS 163 1_555 C SG CYS 162 B CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf15 C SG CYS 173 B CYS 188 1_555 C SG CYS 197 B CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc1 J NA NA . A NA 1 1_555 B OG1 THR 107 A THR 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.187 ? metalc ? metalc2 J NA NA . A NA 1 1_555 GA O HOH . A HOH 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.199 ? metalc ? metalc3 K NA NA . A NA 3 1_555 B OE1 GLN 155 A GLN 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.9 ? metalc ? metalc4 K NA NA . A NA 3 1_555 B OG SER 195 A SER 210 1_555 ? ? ? ? A ? ? ? ? ? ? ? 3.007 ? metalc ? metalc5 K NA NA . A NA 3 1_555 GA O HOH . A HOH 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.011 ? metalc ? metalc6 K NA NA . A NA 3 1_555 GA O HOH . A HOH 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.918 ? metalc ? metalc7 M CA CA . A CA 5 1_555 B O CYS 25 A CYS 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.125 ? metalc ? metalc8 M CA CA . A CA 5 1_555 GA O HOH . A HOH 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.086 ? metalc ? metalc9 N NA NA . A NA 7 1_555 B O HIS 23 A HIS 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.742 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 89 n n C1 C2 EDO sing 90 n n C1 H11 EDO sing 91 n n C1 H12 EDO sing 92 n n O1 HO1 EDO sing 93 n n C2 O2 EDO sing 94 n n C2 H21 EDO sing 95 n n C2 H22 EDO sing 96 n n O2 HO2 EDO sing 97 n n # _atom_sites.entry_id 3E8L _atom_sites.fract_transf_matrix[1][1] 0.013049 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00902 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006536 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 GOL C 1 178 178 GOL GOL . E 3 GOL C 1 179 179 GOL GOL . F 3 GOL C 1 180 180 GOL GOL . G 4 ACT C 1 181 181 ACT ACT . H 4 ACT C 1 182 182 ACT ACT . I 5 SO4 C 1 183 183 SO4 SO4 . J 6 NA A 1 1 1 NA NA . K 6 NA A 1 3 3 NA NA . L 7 CA A 1 4 4 CA CA . M 7 CA A 1 5 5 CA CA . N 6 NA A 1 7 7 NA NA . O 7 CA A 1 8 8 CA CA . P 7 CA A 1 9 9 CA CA . Q 7 CA A 1 10 10 CA CA . R 3 GOL A 1 2 2 GOL GOL . S 3 GOL A 1 239 239 GOL GOL . T 3 GOL A 1 12 12 GOL GOL . U 5 SO4 A 1 240 240 SO4 SO4 . V 4 ACT A 1 6 6 ACT ACT . W 7 CA B 1 6 6 CA CA . X 7 CA B 1 11 11 CA CA . Y 3 GOL B 1 1 1 GOL GOL . Z 8 EDO B 1 3 3 EDO EDO . AA 8 EDO B 1 239 239 EDO EDO . BA 8 EDO B 1 7 7 EDO EDO . CA 8 EDO B 1 8 8 EDO EDO . DA 9 PEG B 1 240 240 PEG PEG . EA 4 ACT B 1 2 2 ACT ACT . FA 10 HOH C 1 184 184 HOH HOH . FA 10 HOH C 2 185 185 HOH HOH . FA 10 HOH C 3 186 186 HOH HOH . FA 10 HOH C 4 187 187 HOH HOH . FA 10 HOH C 5 188 188 HOH HOH . FA 10 HOH C 6 189 189 HOH HOH . FA 10 HOH C 7 190 190 HOH HOH . FA 10 HOH C 8 191 191 HOH HOH . FA 10 HOH C 9 192 192 HOH HOH . FA 10 HOH C 10 193 193 HOH HOH . FA 10 HOH C 11 194 194 HOH HOH . FA 10 HOH C 12 195 195 HOH HOH . FA 10 HOH C 13 196 196 HOH HOH . FA 10 HOH C 14 197 197 HOH HOH . FA 10 HOH C 15 198 198 HOH HOH . FA 10 HOH C 16 199 199 HOH HOH . FA 10 HOH C 17 200 200 HOH HOH . FA 10 HOH C 18 201 201 HOH HOH . FA 10 HOH C 19 202 202 HOH HOH . FA 10 HOH C 20 203 203 HOH HOH . FA 10 HOH C 21 204 204 HOH HOH . FA 10 HOH C 22 205 205 HOH HOH . FA 10 HOH C 23 206 206 HOH HOH . FA 10 HOH C 24 207 207 HOH HOH . FA 10 HOH C 25 208 208 HOH HOH . FA 10 HOH C 26 209 209 HOH HOH . FA 10 HOH C 27 210 210 HOH HOH . FA 10 HOH C 28 211 211 HOH HOH . FA 10 HOH C 29 212 212 HOH HOH . FA 10 HOH C 30 213 213 HOH HOH . FA 10 HOH C 31 214 214 HOH HOH . FA 10 HOH C 32 215 215 HOH HOH . FA 10 HOH C 33 216 216 HOH HOH . FA 10 HOH C 34 217 217 HOH HOH . FA 10 HOH C 35 218 218 HOH HOH . FA 10 HOH C 36 219 219 HOH HOH . FA 10 HOH C 37 220 220 HOH HOH . FA 10 HOH C 38 221 221 HOH HOH . FA 10 HOH C 39 222 222 HOH HOH . FA 10 HOH C 40 223 223 HOH HOH . FA 10 HOH C 41 224 224 HOH HOH . FA 10 HOH C 42 225 225 HOH HOH . GA 10 HOH A 1 241 241 HOH HOH . GA 10 HOH A 2 242 242 HOH HOH . GA 10 HOH A 3 243 243 HOH HOH . GA 10 HOH A 4 244 244 HOH HOH . GA 10 HOH A 5 245 245 HOH HOH . GA 10 HOH A 6 246 246 HOH HOH . GA 10 HOH A 7 247 247 HOH HOH . GA 10 HOH A 8 248 248 HOH HOH . GA 10 HOH A 9 249 249 HOH HOH . GA 10 HOH A 10 250 250 HOH HOH . GA 10 HOH A 11 251 251 HOH HOH . GA 10 HOH A 12 252 252 HOH HOH . GA 10 HOH A 13 253 253 HOH HOH . GA 10 HOH A 14 254 254 HOH HOH . GA 10 HOH A 15 255 255 HOH HOH . GA 10 HOH A 16 256 256 HOH HOH . GA 10 HOH A 17 257 257 HOH HOH . GA 10 HOH A 18 258 258 HOH HOH . GA 10 HOH A 19 259 259 HOH HOH . GA 10 HOH A 20 260 260 HOH HOH . GA 10 HOH A 21 261 261 HOH HOH . GA 10 HOH A 22 262 262 HOH HOH . GA 10 HOH A 23 263 263 HOH HOH . GA 10 HOH A 24 264 264 HOH HOH . GA 10 HOH A 25 265 265 HOH HOH . GA 10 HOH A 26 266 266 HOH HOH . GA 10 HOH A 27 267 267 HOH HOH . GA 10 HOH A 28 268 268 HOH HOH . GA 10 HOH A 29 269 269 HOH HOH . GA 10 HOH A 30 270 270 HOH HOH . GA 10 HOH A 31 271 271 HOH HOH . GA 10 HOH A 32 272 272 HOH HOH . GA 10 HOH A 33 273 273 HOH HOH . GA 10 HOH A 34 274 274 HOH HOH . GA 10 HOH A 35 275 275 HOH HOH . GA 10 HOH A 36 276 276 HOH HOH . GA 10 HOH A 37 277 277 HOH HOH . GA 10 HOH A 38 278 278 HOH HOH . GA 10 HOH A 39 279 279 HOH HOH . GA 10 HOH A 40 280 280 HOH HOH . GA 10 HOH A 41 281 281 HOH HOH . GA 10 HOH A 42 282 282 HOH HOH . GA 10 HOH A 43 283 283 HOH HOH . GA 10 HOH A 44 284 284 HOH HOH . GA 10 HOH A 45 285 285 HOH HOH . GA 10 HOH A 46 286 286 HOH HOH . GA 10 HOH A 47 287 287 HOH HOH . GA 10 HOH A 48 288 288 HOH HOH . GA 10 HOH A 49 289 289 HOH HOH . GA 10 HOH A 50 290 290 HOH HOH . GA 10 HOH A 51 291 291 HOH HOH . GA 10 HOH A 52 292 292 HOH HOH . GA 10 HOH A 53 293 293 HOH HOH . GA 10 HOH A 54 294 294 HOH HOH . GA 10 HOH A 55 295 295 HOH HOH . GA 10 HOH A 56 296 296 HOH HOH . GA 10 HOH A 57 297 297 HOH HOH . GA 10 HOH A 58 298 298 HOH HOH . GA 10 HOH A 59 299 299 HOH HOH . GA 10 HOH A 60 300 300 HOH HOH . GA 10 HOH A 61 301 301 HOH HOH . GA 10 HOH A 62 302 302 HOH HOH . GA 10 HOH A 63 303 303 HOH HOH . GA 10 HOH A 64 304 304 HOH HOH . GA 10 HOH A 65 305 305 HOH HOH . GA 10 HOH A 66 306 306 HOH HOH . GA 10 HOH A 67 307 307 HOH HOH . GA 10 HOH A 68 308 308 HOH HOH . GA 10 HOH A 69 309 309 HOH HOH . GA 10 HOH A 70 310 310 HOH HOH . GA 10 HOH A 71 311 311 HOH HOH . GA 10 HOH A 72 312 312 HOH HOH . GA 10 HOH A 73 313 313 HOH HOH . GA 10 HOH A 74 314 314 HOH HOH . GA 10 HOH A 75 315 315 HOH HOH . GA 10 HOH A 76 316 316 HOH HOH . GA 10 HOH A 77 317 317 HOH HOH . HA 10 HOH B 1 241 241 HOH HOH . HA 10 HOH B 2 242 242 HOH HOH . HA 10 HOH B 3 243 243 HOH HOH . HA 10 HOH B 4 244 244 HOH HOH . HA 10 HOH B 5 245 245 HOH HOH . HA 10 HOH B 6 246 246 HOH HOH . HA 10 HOH B 7 247 247 HOH HOH . HA 10 HOH B 8 248 248 HOH HOH . HA 10 HOH B 9 249 249 HOH HOH . HA 10 HOH B 10 250 250 HOH HOH . HA 10 HOH B 11 251 251 HOH HOH . HA 10 HOH B 12 252 252 HOH HOH . HA 10 HOH B 13 253 253 HOH HOH . HA 10 HOH B 14 255 255 HOH HOH . HA 10 HOH B 15 256 256 HOH HOH . HA 10 HOH B 16 257 257 HOH HOH . HA 10 HOH B 17 258 258 HOH HOH . HA 10 HOH B 18 259 259 HOH HOH . HA 10 HOH B 19 260 260 HOH HOH . HA 10 HOH B 20 261 261 HOH HOH . HA 10 HOH B 21 262 262 HOH HOH . HA 10 HOH B 22 263 263 HOH HOH . HA 10 HOH B 23 264 264 HOH HOH . HA 10 HOH B 24 265 265 HOH HOH . HA 10 HOH B 25 266 266 HOH HOH . HA 10 HOH B 26 267 267 HOH HOH . HA 10 HOH B 27 268 268 HOH HOH . HA 10 HOH B 28 269 269 HOH HOH . HA 10 HOH B 29 270 270 HOH HOH . HA 10 HOH B 30 271 271 HOH HOH . HA 10 HOH B 31 272 272 HOH HOH . HA 10 HOH B 32 273 273 HOH HOH . HA 10 HOH B 33 274 274 HOH HOH . HA 10 HOH B 34 275 275 HOH HOH . HA 10 HOH B 35 277 277 HOH HOH . HA 10 HOH B 36 278 278 HOH HOH . HA 10 HOH B 37 279 279 HOH HOH . HA 10 HOH B 38 280 280 HOH HOH . HA 10 HOH B 39 281 281 HOH HOH . HA 10 HOH B 40 282 282 HOH HOH . HA 10 HOH B 41 283 283 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . AA 8 -2.504 -3.264 -37.387 0.7 35 ? C1 EDO 239 B 1 HETATM 2 O O1 EDO . . . AA 8 -1.713 -3.748 -36.323 0.7 35 ? O1 EDO 239 B 1 HETATM 3 C C2 EDO . . . AA 8 -2.244 -4.143 -38.59 0.7 35 ? C2 EDO 239 B 1 HETATM 4 O O2 EDO . . . AA 8 -1.604 -5.349 -38.185 0.7 35 ? O2 EDO 239 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #