data_3E8Q
#
_model_server_result.job_id            ipyuxcLWexyPvyeM4Y5hFw 
_model_server_result.datetime_utc      '2024-11-15 12:28:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3e8q 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":503}' 
#
_entry.id    3E8Q 
#
_exptl.entry_id    3E8Q 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              54.938 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MANGANESE (II) ION' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3E8Q 
_cell.length_a            87.398 
_cell.length_b            87.398 
_cell.length_c            100.818 
_cell.Z_PDB               9 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3E8Q 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        145 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 124 A ASP 124 1_555 E MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? 
metalc ? metalc2 A OD2 ASP 128 A ASP 128 1_555 D MN MN . A MN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? 
metalc ? metalc3 A OD2 ASP 232 A ASP 232 1_555 D MN MN . A MN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? 
metalc ? metalc4 A OD2 ASP 234 A ASP 234 1_555 E MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? 
metalc ? metalc5 D MN MN . A MN 500 1_555 J O HOH . A HOH 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? 
metalc ? metalc6 B OD1 ASP 124 B ASP 124 1_555 G MN MN . B MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? 
metalc ? metalc7 B OD2 ASP 128 B ASP 128 1_555 F MN MN . B MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? 
metalc ? metalc8 B OD2 ASP 232 B ASP 232 1_555 F MN MN . B MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? 
metalc ? metalc9 B OD2 ASP 234 B ASP 234 1_555 G MN MN . B MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? 
metalc ? metalc10 C OD1 ASP 124 C ASP 124 1_555 I MN MN . C MN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? 
metalc ? metalc11 C OD2 ASP 128 C ASP 128 1_555 H MN MN . C MN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? 
metalc ? metalc12 C OD2 ASP 232 C ASP 232 1_555 H MN MN . C MN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? 
metalc ? metalc13 C OD2 ASP 234 C ASP 234 1_555 I MN MN . C MN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? 
#
_chem_comp.formula           'Mn 2' 
_chem_comp.formula_weight    54.938 
_chem_comp.id                MN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MANGANESE (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3E8Q 
_atom_sites.fract_transf_matrix[1][1]    0.011442 
_atom_sites.fract_transf_matrix[1][2]    0.006606 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013212 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009919 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 MN A 1 500 500 MN MN . 
E 2 MN A 1 501 501 MN MN . 
F 2 MN B 1 502 502 MN MN . 
G 2 MN B 1 503 503 MN MN . 
H 2 MN C 1 504 504 MN MN . 
I 2 MN C 1 505 505 MN MN . 
J 3 HOH A 1 502 15 HOH TIP . 
J 3 HOH A 2 503 29 HOH TIP . 
J 3 HOH A 3 504 30 HOH TIP . 
J 3 HOH A 4 505 31 HOH TIP . 
J 3 HOH A 5 506 32 HOH TIP . 
J 3 HOH A 6 507 33 HOH TIP . 
J 3 HOH A 7 508 36 HOH TIP . 
J 3 HOH A 8 509 39 HOH TIP . 
J 3 HOH A 9 510 40 HOH TIP . 
J 3 HOH A 10 511 41 HOH TIP . 
J 3 HOH A 11 512 42 HOH TIP . 
J 3 HOH A 12 513 43 HOH TIP . 
J 3 HOH A 13 514 46 HOH TIP . 
K 3 HOH B 1 504 2 HOH TIP . 
K 3 HOH B 2 505 3 HOH TIP . 
K 3 HOH B 3 506 11 HOH TIP . 
K 3 HOH B 4 507 12 HOH TIP . 
K 3 HOH B 5 508 13 HOH TIP . 
K 3 HOH B 6 509 14 HOH TIP . 
K 3 HOH B 7 510 18 HOH TIP . 
K 3 HOH B 8 511 19 HOH TIP . 
K 3 HOH B 9 512 21 HOH TIP . 
K 3 HOH B 10 513 24 HOH TIP . 
K 3 HOH B 11 514 26 HOH TIP . 
K 3 HOH B 12 515 34 HOH TIP . 
K 3 HOH B 13 516 44 HOH TIP . 
K 3 HOH B 14 517 45 HOH TIP . 
L 3 HOH C 1 506 1 HOH TIP . 
L 3 HOH C 2 507 4 HOH TIP . 
L 3 HOH C 3 508 5 HOH TIP . 
L 3 HOH C 4 509 6 HOH TIP . 
L 3 HOH C 5 510 7 HOH TIP . 
L 3 HOH C 6 511 8 HOH TIP . 
L 3 HOH C 7 512 9 HOH TIP . 
L 3 HOH C 8 513 10 HOH TIP . 
L 3 HOH C 9 514 16 HOH TIP . 
L 3 HOH C 10 515 17 HOH TIP . 
L 3 HOH C 11 516 20 HOH TIP . 
L 3 HOH C 12 517 22 HOH TIP . 
L 3 HOH C 13 518 23 HOH TIP . 
L 3 HOH C 14 519 25 HOH TIP . 
L 3 HOH C 15 520 27 HOH TIP . 
L 3 HOH C 16 521 28 HOH TIP . 
L 3 HOH C 17 522 35 HOH TIP . 
L 3 HOH C 18 523 37 HOH TIP . 
L 3 HOH C 19 524 38 HOH TIP . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MN 
_atom_site.label_atom_id         MN 
_atom_site.label_comp_id         MN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         G 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               34.481 
_atom_site.Cartn_y               22.506 
_atom_site.Cartn_z               14.085 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        39.13 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MN 
_atom_site.auth_comp_id          MN 
_atom_site.auth_seq_id           503 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              79 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           287 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           1 
#