data_3E97 # _model_server_result.job_id wc1NZ5K59dhjSvGt8XBzGA _model_server_result.datetime_utc '2024-12-22 05:59:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3e97 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":231}' # _entry.id 3E97 # _exptl.entry_id 3E97 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3E97 _cell.length_a 68 _cell.length_b 68 _cell.length_c 111.45 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3E97 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 21 A ALA 20 1_555 A N MSE 22 A MSE 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C MSE 22 A MSE 21 1_555 A N ARG 23 A ARG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale3 A C LEU 105 A LEU 104 1_555 A N MSE 106 A MSE 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale4 A C MSE 106 A MSE 105 1_555 A N LEU 107 A LEU 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale5 A C GLU 128 A GLU 127 1_555 A N MSE 129 A MSE 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale6 A C MSE 129 A MSE 128 1_555 A N LEU 130 A LEU 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale7 A C ILE 181 A ILE 180 1_555 A N MSE 182 A MSE 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale8 A C MSE 182 A MSE 181 1_555 A N ALA 183 A ALA 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 70 n n C1 C2 EDO sing 71 n n C1 H11 EDO sing 72 n n C1 H12 EDO sing 73 n n O1 HO1 EDO sing 74 n n C2 O2 EDO sing 75 n n C2 H21 EDO sing 76 n n C2 H22 EDO sing 77 n n O2 HO2 EDO sing 78 n n # _atom_sites.entry_id 3E97 _atom_sites.fract_transf_matrix[1][1] 0.014706 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014706 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008973 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 231 1 EDO EDO . C 2 EDO A 1 232 2 EDO EDO . D 3 HOH A 1 233 3 HOH HOH . D 3 HOH A 2 234 4 HOH HOH . D 3 HOH A 3 235 5 HOH HOH . D 3 HOH A 4 236 6 HOH HOH . D 3 HOH A 5 237 7 HOH HOH . D 3 HOH A 6 238 8 HOH HOH . D 3 HOH A 7 239 9 HOH HOH . D 3 HOH A 8 240 10 HOH HOH . D 3 HOH A 9 241 11 HOH HOH . D 3 HOH A 10 242 12 HOH HOH . D 3 HOH A 11 243 13 HOH HOH . D 3 HOH A 12 244 14 HOH HOH . D 3 HOH A 13 245 15 HOH HOH . D 3 HOH A 14 246 16 HOH HOH . D 3 HOH A 15 247 17 HOH HOH . D 3 HOH A 16 248 18 HOH HOH . D 3 HOH A 17 249 19 HOH HOH . D 3 HOH A 18 250 20 HOH HOH . D 3 HOH A 19 251 21 HOH HOH . D 3 HOH A 20 252 22 HOH HOH . D 3 HOH A 21 253 23 HOH HOH . D 3 HOH A 22 254 24 HOH HOH . D 3 HOH A 23 255 25 HOH HOH . D 3 HOH A 24 256 26 HOH HOH . D 3 HOH A 25 257 27 HOH HOH . D 3 HOH A 26 258 28 HOH HOH . D 3 HOH A 27 259 29 HOH HOH . D 3 HOH A 28 260 30 HOH HOH . D 3 HOH A 29 261 31 HOH HOH . D 3 HOH A 30 262 32 HOH HOH . D 3 HOH A 31 263 33 HOH HOH . D 3 HOH A 32 264 34 HOH HOH . D 3 HOH A 33 265 35 HOH HOH . D 3 HOH A 34 266 36 HOH HOH . D 3 HOH A 35 267 37 HOH HOH . D 3 HOH A 36 268 38 HOH HOH . D 3 HOH A 37 269 39 HOH HOH . D 3 HOH A 38 270 40 HOH HOH . D 3 HOH A 39 271 41 HOH HOH . D 3 HOH A 40 272 42 HOH HOH . D 3 HOH A 41 273 43 HOH HOH . D 3 HOH A 42 274 44 HOH HOH . D 3 HOH A 43 275 45 HOH HOH . D 3 HOH A 44 276 46 HOH HOH . D 3 HOH A 45 277 47 HOH HOH . D 3 HOH A 46 278 48 HOH HOH . D 3 HOH A 47 279 49 HOH HOH . D 3 HOH A 48 280 50 HOH HOH . D 3 HOH A 49 281 51 HOH HOH . D 3 HOH A 50 282 52 HOH HOH . D 3 HOH A 51 283 53 HOH HOH . D 3 HOH A 52 284 54 HOH HOH . D 3 HOH A 53 285 55 HOH HOH . D 3 HOH A 54 286 56 HOH HOH . D 3 HOH A 55 287 57 HOH HOH . D 3 HOH A 56 288 58 HOH HOH . D 3 HOH A 57 289 59 HOH HOH . D 3 HOH A 58 290 60 HOH HOH . D 3 HOH A 59 291 61 HOH HOH . D 3 HOH A 60 292 62 HOH HOH . D 3 HOH A 61 293 63 HOH HOH . D 3 HOH A 62 294 64 HOH HOH . D 3 HOH A 63 295 65 HOH HOH . D 3 HOH A 64 296 66 HOH HOH . D 3 HOH A 65 297 67 HOH HOH . D 3 HOH A 66 298 68 HOH HOH . D 3 HOH A 67 299 69 HOH HOH . D 3 HOH A 68 300 70 HOH HOH . D 3 HOH A 69 301 71 HOH HOH . D 3 HOH A 70 302 72 HOH HOH . D 3 HOH A 71 303 73 HOH HOH . D 3 HOH A 72 304 74 HOH HOH . D 3 HOH A 73 305 75 HOH HOH . D 3 HOH A 74 306 76 HOH HOH . D 3 HOH A 75 307 77 HOH HOH . D 3 HOH A 76 308 78 HOH HOH . D 3 HOH A 77 309 79 HOH HOH . D 3 HOH A 78 310 80 HOH HOH . D 3 HOH A 79 311 81 HOH HOH . D 3 HOH A 80 312 82 HOH HOH . D 3 HOH A 81 313 83 HOH HOH . D 3 HOH A 82 314 84 HOH HOH . D 3 HOH A 83 315 85 HOH HOH . D 3 HOH A 84 316 86 HOH HOH . D 3 HOH A 85 317 87 HOH HOH . D 3 HOH A 86 318 88 HOH HOH . D 3 HOH A 87 319 89 HOH HOH . D 3 HOH A 88 320 90 HOH HOH . D 3 HOH A 89 321 91 HOH HOH . D 3 HOH A 90 322 92 HOH HOH . D 3 HOH A 91 323 93 HOH HOH . D 3 HOH A 92 324 94 HOH HOH . D 3 HOH A 93 325 95 HOH HOH . D 3 HOH A 94 326 96 HOH HOH . D 3 HOH A 95 327 97 HOH HOH . D 3 HOH A 96 328 98 HOH HOH . D 3 HOH A 97 329 99 HOH HOH . D 3 HOH A 98 330 100 HOH HOH . D 3 HOH A 99 331 101 HOH HOH . D 3 HOH A 100 332 102 HOH HOH . D 3 HOH A 101 333 103 HOH HOH . D 3 HOH A 102 334 104 HOH HOH . D 3 HOH A 103 335 105 HOH HOH . D 3 HOH A 104 336 106 HOH HOH . D 3 HOH A 105 337 107 HOH HOH . D 3 HOH A 106 338 108 HOH HOH . D 3 HOH A 107 339 109 HOH HOH . D 3 HOH A 108 340 110 HOH HOH . D 3 HOH A 109 341 111 HOH HOH . D 3 HOH A 110 342 112 HOH HOH . D 3 HOH A 111 343 113 HOH HOH . D 3 HOH A 112 344 114 HOH HOH . D 3 HOH A 113 345 115 HOH HOH . D 3 HOH A 114 346 116 HOH HOH . D 3 HOH A 115 347 117 HOH HOH . D 3 HOH A 116 348 118 HOH HOH . D 3 HOH A 117 349 119 HOH HOH . D 3 HOH A 118 350 120 HOH HOH . D 3 HOH A 119 351 121 HOH HOH . D 3 HOH A 120 352 122 HOH HOH . D 3 HOH A 121 353 123 HOH HOH . D 3 HOH A 122 354 124 HOH HOH . D 3 HOH A 123 355 125 HOH HOH . D 3 HOH A 124 356 126 HOH HOH . D 3 HOH A 125 357 127 HOH HOH . D 3 HOH A 126 358 128 HOH HOH . D 3 HOH A 127 359 129 HOH HOH . D 3 HOH A 128 360 130 HOH HOH . D 3 HOH A 129 361 131 HOH HOH . D 3 HOH A 130 362 132 HOH HOH . D 3 HOH A 131 363 133 HOH HOH . D 3 HOH A 132 364 134 HOH HOH . D 3 HOH A 133 365 135 HOH HOH . D 3 HOH A 134 366 136 HOH HOH . D 3 HOH A 135 367 137 HOH HOH . D 3 HOH A 136 368 138 HOH HOH . D 3 HOH A 137 369 139 HOH HOH . D 3 HOH A 138 370 140 HOH HOH . D 3 HOH A 139 371 141 HOH HOH . D 3 HOH A 140 372 142 HOH HOH . D 3 HOH A 141 373 143 HOH HOH . D 3 HOH A 142 374 144 HOH HOH . D 3 HOH A 143 375 145 HOH HOH . D 3 HOH A 144 376 146 HOH HOH . D 3 HOH A 145 377 147 HOH HOH . D 3 HOH A 146 378 148 HOH HOH . D 3 HOH A 147 379 149 HOH HOH . D 3 HOH A 148 380 150 HOH HOH . D 3 HOH A 149 381 151 HOH HOH . D 3 HOH A 150 382 152 HOH HOH . D 3 HOH A 151 383 153 HOH HOH . D 3 HOH A 152 384 154 HOH HOH . D 3 HOH A 153 385 155 HOH HOH . D 3 HOH A 154 386 156 HOH HOH . D 3 HOH A 155 387 157 HOH HOH . D 3 HOH A 156 388 158 HOH HOH . D 3 HOH A 157 389 159 HOH HOH . D 3 HOH A 158 390 160 HOH HOH . D 3 HOH A 159 391 161 HOH HOH . D 3 HOH A 160 392 162 HOH HOH . D 3 HOH A 161 393 163 HOH HOH . D 3 HOH A 162 394 164 HOH HOH . D 3 HOH A 163 395 165 HOH HOH . D 3 HOH A 164 396 166 HOH HOH . D 3 HOH A 165 397 167 HOH HOH . D 3 HOH A 166 398 168 HOH HOH . D 3 HOH A 167 399 169 HOH HOH . D 3 HOH A 168 400 170 HOH HOH . D 3 HOH A 169 401 171 HOH HOH . D 3 HOH A 170 402 172 HOH HOH . D 3 HOH A 171 403 173 HOH HOH . D 3 HOH A 172 404 174 HOH HOH . D 3 HOH A 173 405 175 HOH HOH . D 3 HOH A 174 406 176 HOH HOH . D 3 HOH A 175 407 177 HOH HOH . D 3 HOH A 176 408 178 HOH HOH . D 3 HOH A 177 409 179 HOH HOH . D 3 HOH A 178 410 180 HOH HOH . D 3 HOH A 179 411 181 HOH HOH . D 3 HOH A 180 412 182 HOH HOH . D 3 HOH A 181 413 183 HOH HOH . D 3 HOH A 182 414 184 HOH HOH . D 3 HOH A 183 415 185 HOH HOH . D 3 HOH A 184 416 186 HOH HOH . D 3 HOH A 185 417 187 HOH HOH . D 3 HOH A 186 418 188 HOH HOH . D 3 HOH A 187 419 189 HOH HOH . D 3 HOH A 188 420 190 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . B 2 10.675 41.776 -13.112 1 46.55 ? C1 EDO 231 A 1 HETATM 2 O O1 EDO . . . B 2 11.749 42.267 -13.91 1 43.21 ? O1 EDO 231 A 1 HETATM 3 C C2 EDO . . . B 2 10.466 42.732 -11.953 1 46.93 ? C2 EDO 231 A 1 HETATM 4 O O2 EDO . . . B 2 9.154 43.289 -12.074 1 52.19 ? O2 EDO 231 A 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #