data_3E9J # _model_server_result.job_id guWz3ZAE093yZKtqFZCrFA _model_server_result.datetime_utc '2024-12-24 03:10:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3e9j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 3E9J # _exptl.entry_id 3E9J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 250.29 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description UBIQUINONE-1 _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.16 _cell.angle_gamma 90 _cell.entry_id 3E9J _cell.length_a 66.305 _cell.length_b 103.105 _cell.length_c 125.826 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3E9J _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E 1 1 C,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 30 B CYS 30 1_555 B SG CYS 104 C CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf2 C SG CYS 30 E CYS 30 1_555 D SG CYS 104 F CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? # _chem_comp.formula 'C14 H18 O4' _chem_comp.formula_weight 250.29 _chem_comp.id UQ1 _chem_comp.mon_nstd_flag . _chem_comp.name UBIQUINONE-1 _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 UQ1 doub 356 n n C1 C2 UQ1 sing 357 n n C1 C6 UQ1 sing 358 n n C2 O2 UQ1 sing 359 n n C2 C3 UQ1 doub 360 n n O2 CM2 UQ1 sing 361 n n CM2 HM21 UQ1 sing 362 n n CM2 HM22 UQ1 sing 363 n n CM2 HM23 UQ1 sing 364 n n C3 O3 UQ1 sing 365 n n C3 C4 UQ1 sing 366 n n O3 CM3 UQ1 sing 367 n n CM3 HM31 UQ1 sing 368 n n CM3 HM32 UQ1 sing 369 n n CM3 HM33 UQ1 sing 370 n n C4 O4 UQ1 doub 371 n n C4 C5 UQ1 sing 372 n n C5 CM5 UQ1 sing 373 n n C5 C6 UQ1 doub 374 n n CM5 HM51 UQ1 sing 375 n n CM5 HM52 UQ1 sing 376 n n CM5 HM53 UQ1 sing 377 n n C6 C7 UQ1 sing 378 n n C7 C8 UQ1 sing 379 n n C7 H71 UQ1 sing 380 n n C7 H72 UQ1 sing 381 n n C8 C9 UQ1 doub 382 n n C8 H8 UQ1 sing 383 n n C9 C10 UQ1 sing 384 n n C9 C11 UQ1 sing 385 n n C10 H101 UQ1 sing 386 n n C10 H102 UQ1 sing 387 n n C10 H103 UQ1 sing 388 n n C11 H111 UQ1 sing 389 n n C11 H112 UQ1 sing 390 n n C11 H113 UQ1 sing 391 n n # _atom_sites.entry_id 3E9J _atom_sites.fract_transf_matrix[1][1] 0.015082 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000305 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009699 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007949 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 UQ1 C 1 501 501 UQ1 UQ1 . F 3 UQ1 F 1 501 501 UQ1 UQ1 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 UQ1 . . . E 3 -19.416 29.812 -15.871 1 209.21 ? C1 UQ1 501 C 1 HETATM 2 O O1 UQ1 . . . E 3 -20.134 30.826 -15.997 1 209.45 ? O1 UQ1 501 C 1 HETATM 3 C C2 UQ1 . . . E 3 -19.104 29.341 -14.491 1 209.22 ? C2 UQ1 501 C 1 HETATM 4 O O2 UQ1 . . . E 3 -19.626 30.034 -13.422 1 209.16 ? O2 UQ1 501 C 1 HETATM 5 C CM2 UQ1 . . . E 3 -19.047 31.28 -13.006 1 208.74 ? CM2 UQ1 501 C 1 HETATM 6 C C3 UQ1 . . . E 3 -18.236 28.13 -14.287 1 209.62 ? C3 UQ1 501 C 1 HETATM 7 O O3 UQ1 . . . E 3 -17.949 27.682 -13.005 1 209.67 ? O3 UQ1 501 C 1 HETATM 8 C CM3 UQ1 . . . E 3 -17.643 28.569 -11.902 1 209.75 ? CM3 UQ1 501 C 1 HETATM 9 C C4 UQ1 . . . E 3 -17.686 27.401 -15.497 1 209.61 ? C4 UQ1 501 C 1 HETATM 10 O O4 UQ1 . . . E 3 -16.963 26.372 -15.381 1 209.45 ? O4 UQ1 501 C 1 HETATM 11 C C5 UQ1 . . . E 3 -17.999 27.888 -16.88 1 209.57 ? C5 UQ1 501 C 1 HETATM 12 C CM5 UQ1 . . . E 3 -17.431 27.129 -18.061 1 209.57 ? CM5 UQ1 501 C 1 HETATM 13 C C6 UQ1 . . . E 3 -18.875 29.094 -17.073 1 209.39 ? C6 UQ1 501 C 1 HETATM 14 C C7 UQ1 . . . E 3 -19.2 29.581 -18.477 1 209.31 ? C7 UQ1 501 C 1 HETATM 15 C C8 UQ1 . . . E 3 -20.694 29.864 -18.632 1 208.54 ? C8 UQ1 501 C 1 HETATM 16 C C9 UQ1 . . . E 3 -21.46 29.244 -19.55 1 208.07 ? C9 UQ1 501 C 1 HETATM 17 C C10 UQ1 . . . E 3 -22.93 29.578 -19.652 1 208.22 ? C10 UQ1 501 C 1 HETATM 18 C C11 UQ1 . . . E 3 -20.857 28.221 -20.474 1 207.77 ? C11 UQ1 501 C 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 18 #