data_3E9S # _model_server_result.job_id l8C9gQEKHT9W9ZoEg5Q58g _model_server_result.datetime_utc '2024-12-18 01:41:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3e9s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":317}' # _entry.id 3E9S # _exptl.entry_id 3E9S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 304.386 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-amino-2-methyl-N-[(1R)-1-naphthalen-1-ylethyl]benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3E9S _cell.length_a 71.703 _cell.length_b 90.684 _cell.length_c 109.537 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3E9S _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASN 113 A ASN 111 1_555 A N OCS 114 A OCS 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale2 A C OCS 114 A OCS 112 1_555 A N TYR 115 A TYR 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? metalc ? metalc1 A SG CYS 192 A CYS 190 1_555 C ZN ZN . A ZN 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.666 ? metalc ? metalc2 A SG CYS 195 A CYS 193 1_555 C ZN ZN . A ZN 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.712 ? metalc ? metalc3 A SG CYS 227 A CYS 225 1_555 C ZN ZN . A ZN 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? metalc ? metalc4 A SG CYS 229 A CYS 227 1_555 C ZN ZN . A ZN 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.824 ? # _chem_comp.formula 'C20 H20 N2 O' _chem_comp.formula_weight 304.386 _chem_comp.id TTT _chem_comp.mon_nstd_flag . _chem_comp.name 5-amino-2-methyl-N-[(1R)-1-naphthalen-1-ylethyl]benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3E9S _atom_sites.fract_transf_matrix[1][1] 0.013946 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011027 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009129 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TTT A 1 317 1 TTT INH . C 3 ZN A 1 318 1 ZN ZN . D 4 CL A 1 319 1 CL CL . E 4 CL A 1 320 2 CL CL . F 5 HOH A 1 321 1 HOH HOH . F 5 HOH A 2 322 2 HOH HOH . F 5 HOH A 3 323 3 HOH HOH . F 5 HOH A 4 324 4 HOH HOH . F 5 HOH A 5 325 5 HOH HOH . F 5 HOH A 6 326 6 HOH HOH . F 5 HOH A 7 327 7 HOH HOH . F 5 HOH A 8 328 8 HOH HOH . F 5 HOH A 9 329 9 HOH HOH . F 5 HOH A 10 330 10 HOH HOH . F 5 HOH A 11 331 11 HOH HOH . F 5 HOH A 12 332 12 HOH HOH . F 5 HOH A 13 333 13 HOH HOH . F 5 HOH A 14 334 14 HOH HOH . F 5 HOH A 15 335 15 HOH HOH . F 5 HOH A 16 336 16 HOH HOH . F 5 HOH A 17 337 17 HOH HOH . F 5 HOH A 18 338 18 HOH HOH . F 5 HOH A 19 339 19 HOH HOH . F 5 HOH A 20 340 20 HOH HOH . F 5 HOH A 21 341 21 HOH HOH . F 5 HOH A 22 342 22 HOH HOH . F 5 HOH A 23 343 23 HOH HOH . F 5 HOH A 24 344 24 HOH HOH . F 5 HOH A 25 345 25 HOH HOH . F 5 HOH A 26 346 26 HOH HOH . F 5 HOH A 27 347 27 HOH HOH . F 5 HOH A 28 348 28 HOH HOH . F 5 HOH A 29 349 29 HOH HOH . F 5 HOH A 30 350 30 HOH HOH . F 5 HOH A 31 351 31 HOH HOH . F 5 HOH A 32 352 32 HOH HOH . F 5 HOH A 33 353 33 HOH HOH . F 5 HOH A 34 354 34 HOH HOH . F 5 HOH A 35 355 35 HOH HOH . F 5 HOH A 36 356 36 HOH HOH . F 5 HOH A 37 357 37 HOH HOH . F 5 HOH A 38 358 38 HOH HOH . F 5 HOH A 39 359 39 HOH HOH . F 5 HOH A 40 360 40 HOH HOH . F 5 HOH A 41 361 41 HOH HOH . F 5 HOH A 42 362 42 HOH HOH . F 5 HOH A 43 363 43 HOH HOH . F 5 HOH A 44 364 44 HOH HOH . F 5 HOH A 45 365 45 HOH HOH . F 5 HOH A 46 366 46 HOH HOH . F 5 HOH A 47 367 47 HOH HOH . F 5 HOH A 48 368 48 HOH HOH . F 5 HOH A 49 369 49 HOH HOH . F 5 HOH A 50 370 50 HOH HOH . F 5 HOH A 51 371 51 HOH HOH . F 5 HOH A 52 372 52 HOH HOH . F 5 HOH A 53 373 53 HOH HOH . F 5 HOH A 54 374 54 HOH HOH . F 5 HOH A 55 375 55 HOH HOH . F 5 HOH A 56 376 56 HOH HOH . F 5 HOH A 57 377 57 HOH HOH . F 5 HOH A 58 378 58 HOH HOH . F 5 HOH A 59 379 59 HOH HOH . F 5 HOH A 60 380 60 HOH HOH . F 5 HOH A 61 381 61 HOH HOH . F 5 HOH A 62 382 62 HOH HOH . F 5 HOH A 63 383 63 HOH HOH . F 5 HOH A 64 384 64 HOH HOH . F 5 HOH A 65 385 65 HOH HOH . F 5 HOH A 66 386 66 HOH HOH . F 5 HOH A 67 387 67 HOH HOH . F 5 HOH A 68 388 68 HOH HOH . F 5 HOH A 69 389 69 HOH HOH . F 5 HOH A 70 390 70 HOH HOH . F 5 HOH A 71 391 71 HOH HOH . F 5 HOH A 72 392 72 HOH HOH . F 5 HOH A 73 393 73 HOH HOH . F 5 HOH A 74 394 74 HOH HOH . F 5 HOH A 75 395 75 HOH HOH . F 5 HOH A 76 396 76 HOH HOH . F 5 HOH A 77 397 77 HOH HOH . F 5 HOH A 78 398 78 HOH HOH . F 5 HOH A 79 399 79 HOH HOH . F 5 HOH A 80 400 80 HOH HOH . F 5 HOH A 81 401 81 HOH HOH . F 5 HOH A 82 402 82 HOH HOH . F 5 HOH A 83 403 83 HOH HOH . F 5 HOH A 84 404 84 HOH HOH . F 5 HOH A 85 405 85 HOH HOH . F 5 HOH A 86 406 86 HOH HOH . F 5 HOH A 87 407 87 HOH HOH . F 5 HOH A 88 408 88 HOH HOH . F 5 HOH A 89 409 89 HOH HOH . F 5 HOH A 90 410 90 HOH HOH . F 5 HOH A 91 411 91 HOH HOH . F 5 HOH A 92 412 92 HOH HOH . F 5 HOH A 93 413 93 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 TTT . . . B 2 -29.991 21.107 29.927 1 33.57 ? C1 TTT 317 A 1 HETATM 2 C C3 TTT . . . B 2 -28.533 21.413 29.804 1 31.66 ? C3 TTT 317 A 1 HETATM 3 C C8 TTT . . . B 2 -33.744 21.908 31.044 1 36.44 ? C8 TTT 317 A 1 HETATM 4 C C9 TTT . . . B 2 -33.721 24.543 29.861 1 36.68 ? C9 TTT 317 A 1 HETATM 5 C C10 TTT . . . B 2 -27.597 20.263 29.484 1 28.67 ? C10 TTT 317 A 1 HETATM 6 C C11 TTT . . . B 2 -34.476 23.101 31.694 1 37.06 ? C11 TTT 317 A 1 HETATM 7 C C12 TTT . . . B 2 -34.43 24.38 31.066 1 35.67 ? C12 TTT 317 A 1 HETATM 8 C C13 TTT . . . B 2 -28.017 22.725 29.98 1 29.69 ? C13 TTT 317 A 1 HETATM 9 C C14 TTT . . . B 2 -33.787 20.625 31.667 1 37.76 ? C14 TTT 317 A 1 HETATM 10 C C16 TTT . . . B 2 -28.134 18.85 29.288 1 27.7 ? C16 TTT 317 A 1 HETATM 11 C C19 TTT . . . B 2 -26.619 22.931 29.852 1 29.1 ? C19 TTT 317 A 1 HETATM 12 C C20 TTT . . . B 2 -34.513 20.459 32.894 1 38.42 ? C20 TTT 317 A 1 HETATM 13 C C21 TTT . . . B 2 -25.721 21.86 29.554 1 28.81 ? C21 TTT 317 A 1 HETATM 14 C C22 TTT . . . B 2 -35.205 21.571 33.512 1 36.43 ? C22 TTT 317 A 1 HETATM 15 O O7 TTT . . . B 2 -30.323 20.589 30.985 1 36.33 ? O7 TTT 317 A 1 HETATM 16 C C17 TTT . . . B 2 -26.213 20.534 29.371 1 27.22 ? C17 TTT 317 A 1 HETATM 17 N N01 TTT . . . B 2 -26.121 24.164 30.016 1 32.29 ? N01 TTT 317 A 1 HETATM 18 N N2 TTT . . . B 2 -30.856 21.361 28.945 1 35.54 ? N2 TTT 317 A 1 HETATM 19 C C6 TTT . . . B 2 -32.275 21.026 29.064 1 37.52 ? C6 TTT 317 A 1 HETATM 20 C C01 TTT . . . B 2 -32.903 20.725 27.691 1 38.21 ? C01 TTT 317 A 1 HETATM 21 C C5 TTT . . . B 2 -33.003 22.158 29.748 1 37.34 ? C5 TTT 317 A 1 HETATM 22 C C18 TTT . . . B 2 -35.199 22.879 32.939 1 36.81 ? C18 TTT 317 A 1 HETATM 23 C C4 TTT . . . B 2 -33.03 23.478 29.22 1 36.69 ? C4 TTT 317 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 23 #