data_3E9X # _model_server_result.job_id fr2GAgk2x3ape65M04MYHw _model_server_result.datetime_utc '2024-11-14 23:57:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3e9x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":691}' # _entry.id 3E9X # _exptl.entry_id 3E9X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.9 _cell.angle_gamma 90 _cell.entry_id 3E9X _cell.length_a 63.57 _cell.length_b 50.35 _cell.length_c 65.96 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3E9X _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 3 3 2 MAN NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG C 2 NAG 2 n B NAG 2 B 2 NAG C 3 NAG 3 n C NAG 1 C 1 NAG D 4 NAG 3 n C NAG 2 C 2 NAG D 5 NAG 3 n C MAN 3 C 3 MAN D 6 MAN 3 n D NAG 1 D 1 NAG E 7 NAG 3 n D NAG 2 D 2 NAG E 8 NAG 3 n D MAN 3 D 3 MAN E 9 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 348 1_555 A SG CYS 39 A CYS 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 17 A CYS 358 1_555 A SG CYS 30 A CYS 371 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf3 A SG CYS 64 A CYS 405 1_555 A SG CYS 343 A CYS 684 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 A SG CYS 84 A CYS 425 1_555 A SG CYS 306 A CYS 647 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf5 A SG CYS 116 A CYS 457 1_555 A SG CYS 191 A CYS 532 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 A SG CYS 140 A CYS 481 1_555 A SG CYS 334 A CYS 675 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf7 A SG CYS 150 A CYS 491 1_555 A SG CYS 164 A CYS 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf8 A SG CYS 161 A CYS 502 1_555 A SG CYS 174 A CYS 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf9 A SG CYS 232 A CYS 573 1_555 A SG CYS 246 A CYS 587 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf10 A SG CYS 284 A CYS 625 1_555 A SG CYS 289 A CYS 630 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 A ND2 ASN 27 A ASN 368 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale2 A ND2 ASN 135 A ASN 476 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale3 A ND2 ASN 204 A ASN 545 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale4 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale5 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale6 C O4 NAG . C NAG 2 1_555 C C1 MAN . C MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale7 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale8 D O4 NAG . D NAG 2 1_555 D C1 MAN . D MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? metalc ? metalc1 A OD1 ASP 54 A ASP 395 1_555 F FE FE . A FE 687 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc2 A OH TYR 92 A TYR 433 1_555 F FE FE . A FE 687 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc3 A OH TYR 185 A TYR 526 1_555 F FE FE . A FE 687 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? metalc ? metalc4 A NE2 HIS 247 A HIS 588 1_555 I ZN ZN . A ZN 690 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc5 A NE2 HIS 254 A HIS 595 1_555 F FE FE . A FE 687 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc6 A OE2 GLU 318 A GLU 659 1_555 H ZN ZN . A ZN 689 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc7 F FE FE . A FE 687 1_555 G O2 CO3 . A CO3 688 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc8 F FE FE . A FE 687 1_555 G O1 CO3 . A CO3 688 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 381 n n S O2 SO4 doub 382 n n S O3 SO4 sing 383 n n S O4 SO4 sing 384 n n # _atom_sites.entry_id 3E9X _atom_sites.fract_transf_matrix[1][1] 0.015731 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005081 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019861 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015932 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 NIM A 1 1 1 NIM NIM . F 5 FE A 1 687 1 FE FE . G 6 CO3 A 1 688 2 CO3 CO3 . H 7 ZN A 1 689 3 ZN ZN . I 7 ZN A 1 690 4 ZN ZN . J 8 SO4 A 1 691 5 SO4 SO4 . K 9 HOH A 1 692 1 HOH HOH . K 9 HOH A 2 693 2 HOH HOH . K 9 HOH A 3 694 3 HOH HOH . K 9 HOH A 4 695 4 HOH HOH . K 9 HOH A 5 696 5 HOH HOH . K 9 HOH A 6 697 6 HOH HOH . K 9 HOH A 7 698 7 HOH HOH . K 9 HOH A 8 699 8 HOH HOH . K 9 HOH A 9 700 9 HOH HOH . K 9 HOH A 10 701 10 HOH HOH . K 9 HOH A 11 702 11 HOH HOH . K 9 HOH A 12 703 12 HOH HOH . K 9 HOH A 13 704 13 HOH HOH . K 9 HOH A 14 705 14 HOH HOH . K 9 HOH A 15 706 15 HOH HOH . K 9 HOH A 16 707 16 HOH HOH . K 9 HOH A 17 708 17 HOH HOH . K 9 HOH A 18 709 18 HOH HOH . K 9 HOH A 19 710 19 HOH HOH . K 9 HOH A 20 711 20 HOH HOH . K 9 HOH A 21 712 21 HOH HOH . K 9 HOH A 22 713 22 HOH HOH . K 9 HOH A 23 714 23 HOH HOH . K 9 HOH A 24 715 24 HOH HOH . K 9 HOH A 25 716 25 HOH HOH . K 9 HOH A 26 717 26 HOH HOH . K 9 HOH A 27 718 27 HOH HOH . K 9 HOH A 28 719 28 HOH HOH . K 9 HOH A 29 720 29 HOH HOH . K 9 HOH A 30 721 30 HOH HOH . K 9 HOH A 31 722 31 HOH HOH . K 9 HOH A 32 723 32 HOH HOH . K 9 HOH A 33 724 33 HOH HOH . K 9 HOH A 34 725 35 HOH HOH . K 9 HOH A 35 726 36 HOH HOH . K 9 HOH A 36 727 37 HOH HOH . K 9 HOH A 37 728 38 HOH HOH . K 9 HOH A 38 729 39 HOH HOH . K 9 HOH A 39 730 40 HOH HOH . K 9 HOH A 40 731 41 HOH HOH . K 9 HOH A 41 732 42 HOH HOH . K 9 HOH A 42 733 43 HOH HOH . K 9 HOH A 43 734 44 HOH HOH . K 9 HOH A 44 735 45 HOH HOH . K 9 HOH A 45 736 46 HOH HOH . K 9 HOH A 46 737 47 HOH HOH . K 9 HOH A 47 738 48 HOH HOH . K 9 HOH A 48 739 49 HOH HOH . K 9 HOH A 49 740 50 HOH HOH . K 9 HOH A 50 741 51 HOH HOH . K 9 HOH A 51 742 52 HOH HOH . K 9 HOH A 52 743 53 HOH HOH . K 9 HOH A 53 744 54 HOH HOH . K 9 HOH A 54 745 55 HOH HOH . K 9 HOH A 55 746 56 HOH HOH . K 9 HOH A 56 747 57 HOH HOH . K 9 HOH A 57 748 58 HOH HOH . K 9 HOH A 58 749 59 HOH HOH . K 9 HOH A 59 750 60 HOH HOH . K 9 HOH A 60 751 61 HOH HOH . K 9 HOH A 61 752 62 HOH HOH . K 9 HOH A 62 753 63 HOH HOH . K 9 HOH A 63 754 64 HOH HOH . K 9 HOH A 64 755 65 HOH HOH . K 9 HOH A 65 756 66 HOH HOH . K 9 HOH A 66 757 67 HOH HOH . K 9 HOH A 67 758 68 HOH HOH . K 9 HOH A 68 759 69 HOH HOH . K 9 HOH A 69 760 70 HOH HOH . K 9 HOH A 70 761 71 HOH HOH . K 9 HOH A 71 762 72 HOH HOH . K 9 HOH A 72 763 73 HOH HOH . K 9 HOH A 73 764 74 HOH HOH . K 9 HOH A 74 765 75 HOH HOH . K 9 HOH A 75 766 76 HOH HOH . K 9 HOH A 76 767 77 HOH HOH . K 9 HOH A 77 768 79 HOH HOH . K 9 HOH A 78 769 80 HOH HOH . K 9 HOH A 79 770 81 HOH HOH . K 9 HOH A 80 771 82 HOH HOH . K 9 HOH A 81 772 84 HOH HOH . K 9 HOH A 82 773 85 HOH HOH . K 9 HOH A 83 774 87 HOH HOH . K 9 HOH A 84 775 90 HOH HOH . K 9 HOH A 85 776 92 HOH HOH . K 9 HOH A 86 777 93 HOH HOH . K 9 HOH A 87 778 94 HOH HOH . K 9 HOH A 88 779 95 HOH HOH . K 9 HOH A 89 780 96 HOH HOH . K 9 HOH A 90 781 97 HOH HOH . K 9 HOH A 91 782 99 HOH HOH . K 9 HOH A 92 783 101 HOH HOH . K 9 HOH A 93 784 102 HOH HOH . K 9 HOH A 94 785 103 HOH HOH . K 9 HOH A 95 786 105 HOH HOH . K 9 HOH A 96 787 106 HOH HOH . K 9 HOH A 97 788 107 HOH HOH . K 9 HOH A 98 789 108 HOH HOH . K 9 HOH A 99 790 110 HOH HOH . K 9 HOH A 100 791 111 HOH HOH . K 9 HOH A 101 792 112 HOH HOH . K 9 HOH A 102 793 113 HOH HOH . K 9 HOH A 103 794 114 HOH HOH . K 9 HOH A 104 795 117 HOH HOH . K 9 HOH A 105 796 118 HOH HOH . K 9 HOH A 106 797 119 HOH HOH . K 9 HOH A 107 798 120 HOH HOH . K 9 HOH A 108 799 122 HOH HOH . K 9 HOH A 109 800 124 HOH HOH . K 9 HOH A 110 801 125 HOH HOH . K 9 HOH A 111 802 126 HOH HOH . K 9 HOH A 112 803 131 HOH HOH . K 9 HOH A 113 804 132 HOH HOH . K 9 HOH A 114 805 135 HOH HOH . K 9 HOH A 115 806 136 HOH HOH . K 9 HOH A 116 807 138 HOH HOH . K 9 HOH A 117 808 139 HOH HOH . K 9 HOH A 118 809 141 HOH HOH . K 9 HOH A 119 810 142 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . J 8 -1.196 -6.428 -4.8 1 93.69 ? S SO4 691 A 1 HETATM 2 O O1 SO4 . . . J 8 -0.009 -5.568 -4.929 1 92.81 ? O1 SO4 691 A 1 HETATM 3 O O2 SO4 . . . J 8 -1.801 -6.6 -6.136 1 94.51 ? O2 SO4 691 A 1 HETATM 4 O O3 SO4 . . . J 8 -0.813 -7.752 -4.258 1 93.84 ? O3 SO4 691 A 1 HETATM 5 O O4 SO4 . . . J 8 -2.165 -5.798 -3.886 1 93.49 ? O4 SO4 691 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 349 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #