data_3E9Y # _model_server_result.job_id P-uhZXvcXqxRNlBwxvudbQ _model_server_result.datetime_utc '2024-11-06 01:30:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3e9y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":695}' # _entry.id 3E9Y # _exptl.entry_id 3E9Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 337.311 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(4-methylpyrimidin-2-yl)carbamoyl]-2-nitrobenzenesulfonamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3E9Y _cell.length_a 178.866 _cell.length_b 178.866 _cell.length_c 186.078 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3E9Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 software_defined_assembly 1 ? tetrameric 4 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 1,2 A,B,C,D,E,F,G 2 1,3,4,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/3 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 89.433 154.9025 62.026 3 'crystal symmetry operation' 4_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 89.433 154.9025 0 4 'crystal symmetry operation' 7_555 y,x,-z+1/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 62.026 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PRO 253 A PRO 339 1_555 A N CSD 254 A CSD 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 A C CSD 254 A CSD 340 1_555 A N ASP 255 A ASP 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? metalc ? metalc1 A OD1 ASP 452 A ASP 538 1_555 D MG MG . A MG 699 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc2 A OD1 ASN 479 A ASN 565 1_555 D MG MG . A MG 699 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc3 A O HIS 481 A HIS 567 1_555 D MG MG . A MG 699 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc4 D MG MG . A MG 699 1_555 E O1A TDM . A TDM 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc5 D MG MG . A MG 699 1_555 E O1B TDM . A TDM 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? # _chem_comp.formula 'C12 H11 N5 O5 S' _chem_comp.formula_weight 337.311 _chem_comp.id 1MS _chem_comp.mon_nstd_flag . _chem_comp.name N-[(4-methylpyrimidin-2-yl)carbamoyl]-2-nitrobenzenesulfonamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O8 N7 1MS doub 1 n n N7 O9 1MS sing 2 n n N7 C1 1MS sing 3 n n C1 C6 1MS doub 4 n y C1 C2 1MS sing 5 n y C6 C5 1MS sing 6 n y C5 C4 1MS doub 7 n y C4 C3 1MS sing 8 n y C3 C2 1MS doub 9 n y C2 S10 1MS sing 10 n n S10 O11 1MS doub 11 n n S10 O12 1MS doub 12 n n S10 N13 1MS sing 13 n n N13 C14 1MS sing 14 n n C14 O15 1MS doub 15 n n C14 N16 1MS sing 16 n n N16 C18 1MS sing 17 n n C18 N17 1MS doub 18 n y C18 N19 1MS sing 19 n y N17 C23 1MS sing 20 n y C23 C22 1MS doub 21 n y C22 C20 1MS sing 22 n y C20 C21 1MS sing 23 n n C20 N19 1MS doub 24 n y C6 H6 1MS sing 25 n n C5 H5 1MS sing 26 n n C4 H4 1MS sing 27 n n C3 H3 1MS sing 28 n n N13 HN13 1MS sing 29 n n N16 HN16 1MS sing 30 n n C23 H23 1MS sing 31 n n C22 H22 1MS sing 32 n n C21 H21 1MS sing 33 n n C21 H21A 1MS sing 34 n n C21 H21B 1MS sing 35 n n # _atom_sites.entry_id 3E9Y _atom_sites.fract_transf_matrix[1][1] 0.005591 _atom_sites.fract_transf_matrix[1][2] 0.003228 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006456 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005374 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 1MS A 1 695 695 1MS 1MS . C 3 NHE A 1 696 696 NHE NHE . D 4 MG A 1 699 699 MG MG . E 5 TDM A 1 700 700 TDM TDM . F 6 FAB A 1 701 701 FAB FAB . G 7 HOH A 1 702 2 HOH HOH . G 7 HOH A 2 703 3 HOH HOH . G 7 HOH A 3 704 4 HOH HOH . G 7 HOH A 4 705 5 HOH HOH . G 7 HOH A 5 706 6 HOH HOH . G 7 HOH A 6 707 8 HOH HOH . G 7 HOH A 7 708 10 HOH HOH . G 7 HOH A 8 709 12 HOH HOH . G 7 HOH A 9 710 16 HOH HOH . G 7 HOH A 10 711 18 HOH HOH . G 7 HOH A 11 712 19 HOH HOH . G 7 HOH A 12 713 20 HOH HOH . G 7 HOH A 13 714 21 HOH HOH . G 7 HOH A 14 715 23 HOH HOH . G 7 HOH A 15 716 25 HOH HOH . G 7 HOH A 16 717 32 HOH HOH . G 7 HOH A 17 718 34 HOH HOH . G 7 HOH A 18 719 35 HOH HOH . G 7 HOH A 19 720 37 HOH HOH . G 7 HOH A 20 721 38 HOH HOH . G 7 HOH A 21 722 40 HOH HOH . G 7 HOH A 22 723 43 HOH HOH . G 7 HOH A 23 724 44 HOH HOH . G 7 HOH A 24 725 45 HOH HOH . G 7 HOH A 25 726 46 HOH HOH . G 7 HOH A 26 727 47 HOH HOH . G 7 HOH A 27 728 50 HOH HOH . G 7 HOH A 28 729 51 HOH HOH . G 7 HOH A 29 730 53 HOH HOH . G 7 HOH A 30 731 54 HOH HOH . G 7 HOH A 31 732 57 HOH HOH . G 7 HOH A 32 733 60 HOH HOH . G 7 HOH A 33 734 62 HOH HOH . G 7 HOH A 34 735 63 HOH HOH . G 7 HOH A 35 736 67 HOH HOH . G 7 HOH A 36 737 68 HOH HOH . G 7 HOH A 37 738 78 HOH HOH . G 7 HOH A 38 739 82 HOH HOH . G 7 HOH A 39 740 83 HOH HOH . G 7 HOH A 40 741 85 HOH HOH . G 7 HOH A 41 742 90 HOH HOH . G 7 HOH A 42 743 93 HOH HOH . G 7 HOH A 43 744 95 HOH HOH . G 7 HOH A 44 745 96 HOH HOH . G 7 HOH A 45 746 97 HOH HOH . G 7 HOH A 46 747 98 HOH HOH . G 7 HOH A 47 748 102 HOH HOH . G 7 HOH A 48 749 103 HOH HOH . G 7 HOH A 49 750 104 HOH HOH . G 7 HOH A 50 751 107 HOH HOH . G 7 HOH A 51 752 109 HOH HOH . G 7 HOH A 52 753 115 HOH HOH . G 7 HOH A 53 754 120 HOH HOH . G 7 HOH A 54 755 127 HOH HOH . G 7 HOH A 55 756 129 HOH HOH . G 7 HOH A 56 757 131 HOH HOH . G 7 HOH A 57 758 132 HOH HOH . G 7 HOH A 58 759 134 HOH HOH . G 7 HOH A 59 760 141 HOH HOH . G 7 HOH A 60 761 142 HOH HOH . G 7 HOH A 61 762 144 HOH HOH . G 7 HOH A 62 763 146 HOH HOH . G 7 HOH A 63 764 148 HOH HOH . G 7 HOH A 64 765 151 HOH HOH . G 7 HOH A 65 766 154 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O8 1MS . . . B 2 53.626 57.05 43.73 1 67.28 ? O8 1MS 695 A 1 HETATM 2 N N7 1MS . . . B 2 52.915 56.326 44.733 1 67.17 ? N7 1MS 695 A 1 HETATM 3 O O9 1MS . . . B 2 52.774 54.937 44.541 1 67.19 ? O9 1MS 695 A 1 HETATM 4 C C1 1MS . . . B 2 52.42 56.988 45.79 1 66.9 ? C1 1MS 695 A 1 HETATM 5 C C6 1MS . . . B 2 52.645 58.36 45.82 1 66.77 ? C6 1MS 695 A 1 HETATM 6 C C5 1MS . . . B 2 52.197 59.186 46.845 1 67.01 ? C5 1MS 695 A 1 HETATM 7 C C4 1MS . . . B 2 51.478 58.753 47.959 1 67.07 ? C4 1MS 695 A 1 HETATM 8 C C3 1MS . . . B 2 51.172 57.248 48.032 1 66.98 ? C3 1MS 695 A 1 HETATM 9 C C2 1MS . . . B 2 51.713 56.417 46.857 1 66.9 ? C2 1MS 695 A 1 HETATM 10 S S10 1MS . . . B 2 51.334 54.697 46.973 1 66.85 ? S10 1MS 695 A 1 HETATM 11 O O11 1MS . . . B 2 50.922 54.384 48.372 1 67 ? O11 1MS 695 A 1 HETATM 12 O O12 1MS . . . B 2 50.18 54.403 46.067 1 66.92 ? O12 1MS 695 A 1 HETATM 13 N N13 1MS . . . B 2 52.585 53.682 46.572 1 66.77 ? N13 1MS 695 A 1 HETATM 14 C C14 1MS . . . B 2 53.806 53.931 47.059 1 66.38 ? C14 1MS 695 A 1 HETATM 15 O O15 1MS . . . B 2 54.002 54.713 47.989 1 66.27 ? O15 1MS 695 A 1 HETATM 16 N N16 1MS . . . B 2 54.784 53.251 46.443 1 65.78 ? N16 1MS 695 A 1 HETATM 17 C C18 1MS . . . B 2 56.097 53.305 46.715 1 65.76 ? C18 1MS 695 A 1 HETATM 18 N N17 1MS . . . B 2 56.62 54.17 47.609 1 65.62 ? N17 1MS 695 A 1 HETATM 19 C C23 1MS . . . B 2 57.921 54.219 47.871 1 65.28 ? C23 1MS 695 A 1 HETATM 20 C C22 1MS . . . B 2 58.815 53.369 47.225 1 65.34 ? C22 1MS 695 A 1 HETATM 21 C C20 1MS . . . B 2 58.328 52.459 46.295 1 65.36 ? C20 1MS 695 A 1 HETATM 22 C C21 1MS . . . B 2 59.193 51.598 45.631 1 65.56 ? C21 1MS 695 A 1 HETATM 23 N N19 1MS . . . B 2 56.953 52.421 46.033 1 65.6 ? N19 1MS 695 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 23 #