data_3E9Y # _model_server_result.job_id I5tsNfyEXs3vnv1BJQ6EQQ _model_server_result.datetime_utc '2024-11-06 01:41:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3e9y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":699}' # _entry.id 3E9Y # _exptl.entry_id 3E9Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3E9Y _cell.length_a 178.866 _cell.length_b 178.866 _cell.length_c 186.078 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3E9Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 software_defined_assembly 1 ? tetrameric 4 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 1,2 A,B,C,D,E,F,G 2 1,3,4,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/3 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 89.433 154.9025 62.026 3 'crystal symmetry operation' 4_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 89.433 154.9025 0 4 'crystal symmetry operation' 7_555 y,x,-z+1/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 62.026 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PRO 253 A PRO 339 1_555 A N CSD 254 A CSD 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 A C CSD 254 A CSD 340 1_555 A N ASP 255 A ASP 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? metalc ? metalc1 A OD1 ASP 452 A ASP 538 1_555 D MG MG . A MG 699 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc2 A OD1 ASN 479 A ASN 565 1_555 D MG MG . A MG 699 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc3 A O HIS 481 A HIS 567 1_555 D MG MG . A MG 699 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc4 D MG MG . A MG 699 1_555 E O1A TDM . A TDM 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc5 D MG MG . A MG 699 1_555 E O1B TDM . A TDM 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3E9Y _atom_sites.fract_transf_matrix[1][1] 0.005591 _atom_sites.fract_transf_matrix[1][2] 0.003228 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006456 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005374 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 1MS A 1 695 695 1MS 1MS . C 3 NHE A 1 696 696 NHE NHE . D 4 MG A 1 699 699 MG MG . E 5 TDM A 1 700 700 TDM TDM . F 6 FAB A 1 701 701 FAB FAB . G 7 HOH A 1 702 2 HOH HOH . G 7 HOH A 2 703 3 HOH HOH . G 7 HOH A 3 704 4 HOH HOH . G 7 HOH A 4 705 5 HOH HOH . G 7 HOH A 5 706 6 HOH HOH . G 7 HOH A 6 707 8 HOH HOH . G 7 HOH A 7 708 10 HOH HOH . G 7 HOH A 8 709 12 HOH HOH . G 7 HOH A 9 710 16 HOH HOH . G 7 HOH A 10 711 18 HOH HOH . G 7 HOH A 11 712 19 HOH HOH . G 7 HOH A 12 713 20 HOH HOH . G 7 HOH A 13 714 21 HOH HOH . G 7 HOH A 14 715 23 HOH HOH . G 7 HOH A 15 716 25 HOH HOH . G 7 HOH A 16 717 32 HOH HOH . G 7 HOH A 17 718 34 HOH HOH . G 7 HOH A 18 719 35 HOH HOH . G 7 HOH A 19 720 37 HOH HOH . G 7 HOH A 20 721 38 HOH HOH . G 7 HOH A 21 722 40 HOH HOH . G 7 HOH A 22 723 43 HOH HOH . G 7 HOH A 23 724 44 HOH HOH . G 7 HOH A 24 725 45 HOH HOH . G 7 HOH A 25 726 46 HOH HOH . G 7 HOH A 26 727 47 HOH HOH . G 7 HOH A 27 728 50 HOH HOH . G 7 HOH A 28 729 51 HOH HOH . G 7 HOH A 29 730 53 HOH HOH . G 7 HOH A 30 731 54 HOH HOH . G 7 HOH A 31 732 57 HOH HOH . G 7 HOH A 32 733 60 HOH HOH . G 7 HOH A 33 734 62 HOH HOH . G 7 HOH A 34 735 63 HOH HOH . G 7 HOH A 35 736 67 HOH HOH . G 7 HOH A 36 737 68 HOH HOH . G 7 HOH A 37 738 78 HOH HOH . G 7 HOH A 38 739 82 HOH HOH . G 7 HOH A 39 740 83 HOH HOH . G 7 HOH A 40 741 85 HOH HOH . G 7 HOH A 41 742 90 HOH HOH . G 7 HOH A 42 743 93 HOH HOH . G 7 HOH A 43 744 95 HOH HOH . G 7 HOH A 44 745 96 HOH HOH . G 7 HOH A 45 746 97 HOH HOH . G 7 HOH A 46 747 98 HOH HOH . G 7 HOH A 47 748 102 HOH HOH . G 7 HOH A 48 749 103 HOH HOH . G 7 HOH A 49 750 104 HOH HOH . G 7 HOH A 50 751 107 HOH HOH . G 7 HOH A 51 752 109 HOH HOH . G 7 HOH A 52 753 115 HOH HOH . G 7 HOH A 53 754 120 HOH HOH . G 7 HOH A 54 755 127 HOH HOH . G 7 HOH A 55 756 129 HOH HOH . G 7 HOH A 56 757 131 HOH HOH . G 7 HOH A 57 758 132 HOH HOH . G 7 HOH A 58 759 134 HOH HOH . G 7 HOH A 59 760 141 HOH HOH . G 7 HOH A 60 761 142 HOH HOH . G 7 HOH A 61 762 144 HOH HOH . G 7 HOH A 62 763 146 HOH HOH . G 7 HOH A 63 764 148 HOH HOH . G 7 HOH A 64 765 151 HOH HOH . G 7 HOH A 65 766 154 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 71.485 _atom_site.Cartn_y 50.162 _atom_site.Cartn_z 43.437 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 48.46 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 699 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #