data_3EA0
#
_model_server_result.job_id            nvXrGd5VJ7lBiQbEqWmJjg 
_model_server_result.datetime_utc      '2025-02-27 12:02:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ea0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":243}' 
#
_entry.id    3EA0 
#
_exptl.entry_id    3EA0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3EA0 
_cell.length_a            50.572 
_cell.length_b            67.032 
_cell.length_c            134.786 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3EA0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ASP 50 A ASP 47 1_555 A N MSE 51 A MSE 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale2 A C MSE 51 A MSE 48 1_555 A N TYR 52 A TYR 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale3 A C THR 79 A THR 76 1_555 A N MSE 80 A MSE 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale4 A C MSE 80 A MSE 77 1_555 A N VAL 81 A VAL 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale5 A C ALA 211 A ALA 208 1_555 A N MSE 212 A MSE 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale6 A C MSE 212 A MSE 209 1_555 A N GLN 213 A GLN 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale7 B C ASP 50 B ASP 47 1_555 B N MSE 51 B MSE 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale8 B C MSE 51 B MSE 48 1_555 B N TYR 52 B TYR 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale9 B C THR 79 B THR 76 1_555 B N MSE 80 B MSE 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale10 B C MSE 80 B MSE 77 1_555 B N VAL 81 B VAL 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale11 B C ALA 211 B ALA 208 1_555 B N MSE 212 B MSE 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale12 B C MSE 212 B MSE 209 1_555 B N GLN 213 B GLN 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
metalc ? metalc1 C O3G ATP . A ATP 243 1_555 D MG MG . A MG 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? 
metalc ? metalc2 E O3G ATP . B ATP 243 1_555 F MG MG . B MG 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? 
metalc ? metalc3 F MG MG . B MG 244 1_555 H O HOH . B HOH 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     3EA0 
_atom_sites.fract_transf_matrix[1][1]    0.019774 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014918 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007419 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ATP A 1 243 1 ATP ATP . 
D 3 MG A 1 244 3 MG MG . 
E 2 ATP B 1 243 2 ATP ATP . 
F 3 MG B 1 244 4 MG MG . 
G 4 HOH A 1 245 1 HOH HOH . 
G 4 HOH A 2 246 3 HOH HOH . 
G 4 HOH A 3 247 5 HOH HOH . 
G 4 HOH A 4 248 9 HOH HOH . 
G 4 HOH A 5 249 10 HOH HOH . 
G 4 HOH A 6 250 12 HOH HOH . 
G 4 HOH A 7 251 13 HOH HOH . 
G 4 HOH A 8 252 16 HOH HOH . 
G 4 HOH A 9 253 17 HOH HOH . 
G 4 HOH A 10 254 18 HOH HOH . 
G 4 HOH A 11 255 19 HOH HOH . 
G 4 HOH A 12 256 20 HOH HOH . 
G 4 HOH A 13 257 23 HOH HOH . 
G 4 HOH A 14 258 26 HOH HOH . 
G 4 HOH A 15 259 36 HOH HOH . 
G 4 HOH A 16 260 37 HOH HOH . 
G 4 HOH A 17 261 39 HOH HOH . 
G 4 HOH A 18 262 40 HOH HOH . 
G 4 HOH A 19 263 41 HOH HOH . 
G 4 HOH A 20 264 42 HOH HOH . 
G 4 HOH A 21 265 44 HOH HOH . 
G 4 HOH A 22 266 46 HOH HOH . 
G 4 HOH A 23 267 47 HOH HOH . 
G 4 HOH A 24 268 48 HOH HOH . 
G 4 HOH A 25 269 49 HOH HOH . 
G 4 HOH A 26 270 53 HOH HOH . 
G 4 HOH A 27 271 54 HOH HOH . 
G 4 HOH A 28 272 56 HOH HOH . 
G 4 HOH A 29 273 57 HOH HOH . 
G 4 HOH A 30 274 63 HOH HOH . 
G 4 HOH A 31 275 64 HOH HOH . 
G 4 HOH A 32 276 66 HOH HOH . 
G 4 HOH A 33 277 67 HOH HOH . 
G 4 HOH A 34 278 68 HOH HOH . 
G 4 HOH A 35 279 69 HOH HOH . 
G 4 HOH A 36 280 70 HOH HOH . 
G 4 HOH A 37 281 72 HOH HOH . 
G 4 HOH A 38 282 73 HOH HOH . 
G 4 HOH A 39 283 74 HOH HOH . 
G 4 HOH A 40 284 75 HOH HOH . 
G 4 HOH A 41 285 82 HOH HOH . 
G 4 HOH A 42 286 86 HOH HOH . 
G 4 HOH A 43 287 89 HOH HOH . 
G 4 HOH A 44 288 91 HOH HOH . 
G 4 HOH A 45 289 99 HOH HOH . 
G 4 HOH A 46 290 100 HOH HOH . 
G 4 HOH A 47 291 101 HOH HOH . 
G 4 HOH A 48 292 107 HOH HOH . 
G 4 HOH A 49 293 108 HOH HOH . 
G 4 HOH A 50 294 110 HOH HOH . 
G 4 HOH A 51 295 111 HOH HOH . 
H 4 HOH B 1 245 2 HOH HOH . 
H 4 HOH B 2 246 4 HOH HOH . 
H 4 HOH B 3 247 6 HOH HOH . 
H 4 HOH B 4 248 7 HOH HOH . 
H 4 HOH B 5 249 8 HOH HOH . 
H 4 HOH B 6 250 11 HOH HOH . 
H 4 HOH B 7 251 14 HOH HOH . 
H 4 HOH B 8 252 15 HOH HOH . 
H 4 HOH B 9 253 21 HOH HOH . 
H 4 HOH B 10 254 22 HOH HOH . 
H 4 HOH B 11 255 24 HOH HOH . 
H 4 HOH B 12 256 25 HOH HOH . 
H 4 HOH B 13 257 27 HOH HOH . 
H 4 HOH B 14 258 28 HOH HOH . 
H 4 HOH B 15 259 29 HOH HOH . 
H 4 HOH B 16 260 30 HOH HOH . 
H 4 HOH B 17 261 31 HOH HOH . 
H 4 HOH B 18 262 32 HOH HOH . 
H 4 HOH B 19 263 33 HOH HOH . 
H 4 HOH B 20 264 34 HOH HOH . 
H 4 HOH B 21 265 35 HOH HOH . 
H 4 HOH B 22 266 38 HOH HOH . 
H 4 HOH B 23 267 43 HOH HOH . 
H 4 HOH B 24 268 45 HOH HOH . 
H 4 HOH B 25 269 50 HOH HOH . 
H 4 HOH B 26 270 51 HOH HOH . 
H 4 HOH B 27 271 52 HOH HOH . 
H 4 HOH B 28 272 55 HOH HOH . 
H 4 HOH B 29 273 58 HOH HOH . 
H 4 HOH B 30 274 59 HOH HOH . 
H 4 HOH B 31 275 60 HOH HOH . 
H 4 HOH B 32 276 61 HOH HOH . 
H 4 HOH B 33 277 62 HOH HOH . 
H 4 HOH B 34 278 65 HOH HOH . 
H 4 HOH B 35 279 71 HOH HOH . 
H 4 HOH B 36 280 76 HOH HOH . 
H 4 HOH B 37 281 77 HOH HOH . 
H 4 HOH B 38 282 78 HOH HOH . 
H 4 HOH B 39 283 79 HOH HOH . 
H 4 HOH B 40 284 80 HOH HOH . 
H 4 HOH B 41 285 81 HOH HOH . 
H 4 HOH B 42 286 83 HOH HOH . 
H 4 HOH B 43 287 84 HOH HOH . 
H 4 HOH B 44 288 85 HOH HOH . 
H 4 HOH B 45 289 87 HOH HOH . 
H 4 HOH B 46 290 88 HOH HOH . 
H 4 HOH B 47 291 90 HOH HOH . 
H 4 HOH B 48 292 92 HOH HOH . 
H 4 HOH B 49 293 93 HOH HOH . 
H 4 HOH B 50 294 94 HOH HOH . 
H 4 HOH B 51 295 95 HOH HOH . 
H 4 HOH B 52 296 96 HOH HOH . 
H 4 HOH B 53 297 97 HOH HOH . 
H 4 HOH B 54 298 98 HOH HOH . 
H 4 HOH B 55 299 102 HOH HOH . 
H 4 HOH B 56 300 103 HOH HOH . 
H 4 HOH B 57 301 104 HOH HOH . 
H 4 HOH B 58 302 105 HOH HOH . 
H 4 HOH B 59 303 106 HOH HOH . 
H 4 HOH B 60 304 109 HOH HOH . 
H 4 HOH B 61 305 112 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . C 2 26.888 -5.438 53.218 0.5 43.8 ? PG ATP 243 A 1 
HETATM 2 O O1G ATP . . . C 2 27.955 -4.583 52.559 1 43.6 ? O1G ATP 243 A 1 
HETATM 3 O O2G ATP . . . C 2 26.635 -5.043 54.662 1 43.45 ? O2G ATP 243 A 1 
HETATM 4 O O3G ATP . . . C 2 27.179 -6.896 53.026 1 35.41 ? O3G ATP 243 A 1 
HETATM 5 P PB ATP . . . C 2 25.147 -3.745 51.906 1 25.6 ? PB ATP 243 A 1 
HETATM 6 O O1B ATP . . . C 2 24.625 -3.709 50.494 1 32.46 ? O1B ATP 243 A 1 
HETATM 7 O O2B ATP . . . C 2 26.33 -2.902 52.288 1 28.09 ? O2B ATP 243 A 1 
HETATM 8 O O3B ATP . . . C 2 25.464 -5.21 52.461 1 24.36 ? O3B ATP 243 A 1 
HETATM 9 P PA ATP . . . C 2 23.02 -4.069 53.856 1 29.19 ? PA ATP 243 A 1 
HETATM 10 O O1A ATP . . . C 2 23.83 -4.075 55.125 1 24.58 ? O1A ATP 243 A 1 
HETATM 11 O O2A ATP . . . C 2 22.488 -5.346 53.282 1 30.55 ? O2A ATP 243 A 1 
HETATM 12 O O3A ATP . . . C 2 23.952 -3.217 52.852 1 36.69 ? O3A ATP 243 A 1 
HETATM 13 O O5' ATP . . . C 2 21.778 -3.054 53.983 1 34.55 ? O5' ATP 243 A 1 
HETATM 14 C C5' ATP . . . C 2 22.037 -1.661 54.249 1 31.55 ? C5' ATP 243 A 1 
HETATM 15 C C4' ATP . . . C 2 20.901 -0.995 55.043 1 30.04 ? C4' ATP 243 A 1 
HETATM 16 O O4' ATP . . . C 2 19.673 -0.978 54.304 1 34.42 ? O4' ATP 243 A 1 
HETATM 17 C C3' ATP . . . C 2 20.574 -1.736 56.328 1 23.35 ? C3' ATP 243 A 1 
HETATM 18 O O3' ATP . . . C 2 20.202 -0.768 57.315 1 30.4 ? O3' ATP 243 A 1 
HETATM 19 C C2' ATP . . . C 2 19.367 -2.592 55.977 1 26.7 ? C2' ATP 243 A 1 
HETATM 20 O O2' ATP . . . C 2 18.58 -2.923 57.134 1 33.92 ? O2' ATP 243 A 1 
HETATM 21 C C1' ATP . . . C 2 18.633 -1.705 54.996 1 25.89 ? C1' ATP 243 A 1 
HETATM 22 N N9 ATP . . . C 2 17.86 -2.443 53.974 1 30.27 ? N9 ATP 243 A 1 
HETATM 23 C C8 ATP . . . C 2 18.348 -3.354 53.112 1 29.15 ? C8 ATP 243 A 1 
HETATM 24 N N7 ATP . . . C 2 17.371 -3.822 52.295 1 26.77 ? N7 ATP 243 A 1 
HETATM 25 C C5 ATP . . . C 2 16.222 -3.195 52.605 1 24.39 ? C5 ATP 243 A 1 
HETATM 26 C C6 ATP . . . C 2 14.812 -3.197 52.129 1 22.97 ? C6 ATP 243 A 1 
HETATM 27 N N6 ATP . . . C 2 14.366 -3.981 51.116 1 24.01 ? N6 ATP 243 A 1 
HETATM 28 N N1 ATP . . . C 2 13.942 -2.381 52.762 1 28.84 ? N1 ATP 243 A 1 
HETATM 29 C C2 ATP . . . C 2 14.332 -1.587 53.772 1 31.77 ? C2 ATP 243 A 1 
HETATM 30 N N3 ATP . . . C 2 15.584 -1.528 54.248 1 29.34 ? N3 ATP 243 A 1 
HETATM 31 C C4 ATP . . . C 2 16.559 -2.286 53.717 1 27.87 ? C4 ATP 243 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           31 
#