data_3EA0 # _model_server_result.job_id h3bisyFN0k3Kk2poKrgJDA _model_server_result.datetime_utc '2025-02-27 12:01:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ea0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":244}' # _entry.id 3EA0 # _exptl.entry_id 3EA0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3EA0 _cell.length_a 50.572 _cell.length_b 67.032 _cell.length_c 134.786 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EA0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASP 50 A ASP 47 1_555 A N MSE 51 A MSE 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale2 A C MSE 51 A MSE 48 1_555 A N TYR 52 A TYR 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale3 A C THR 79 A THR 76 1_555 A N MSE 80 A MSE 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale4 A C MSE 80 A MSE 77 1_555 A N VAL 81 A VAL 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 A C ALA 211 A ALA 208 1_555 A N MSE 212 A MSE 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale6 A C MSE 212 A MSE 209 1_555 A N GLN 213 A GLN 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale7 B C ASP 50 B ASP 47 1_555 B N MSE 51 B MSE 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale8 B C MSE 51 B MSE 48 1_555 B N TYR 52 B TYR 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale9 B C THR 79 B THR 76 1_555 B N MSE 80 B MSE 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale10 B C MSE 80 B MSE 77 1_555 B N VAL 81 B VAL 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale11 B C ALA 211 B ALA 208 1_555 B N MSE 212 B MSE 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale12 B C MSE 212 B MSE 209 1_555 B N GLN 213 B GLN 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? metalc ? metalc1 C O3G ATP . A ATP 243 1_555 D MG MG . A MG 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc2 E O3G ATP . B ATP 243 1_555 F MG MG . B MG 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc3 F MG MG . B MG 244 1_555 H O HOH . B HOH 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3EA0 _atom_sites.fract_transf_matrix[1][1] 0.019774 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014918 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007419 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ATP A 1 243 1 ATP ATP . D 3 MG A 1 244 3 MG MG . E 2 ATP B 1 243 2 ATP ATP . F 3 MG B 1 244 4 MG MG . G 4 HOH A 1 245 1 HOH HOH . G 4 HOH A 2 246 3 HOH HOH . G 4 HOH A 3 247 5 HOH HOH . G 4 HOH A 4 248 9 HOH HOH . G 4 HOH A 5 249 10 HOH HOH . G 4 HOH A 6 250 12 HOH HOH . G 4 HOH A 7 251 13 HOH HOH . G 4 HOH A 8 252 16 HOH HOH . G 4 HOH A 9 253 17 HOH HOH . G 4 HOH A 10 254 18 HOH HOH . G 4 HOH A 11 255 19 HOH HOH . G 4 HOH A 12 256 20 HOH HOH . G 4 HOH A 13 257 23 HOH HOH . G 4 HOH A 14 258 26 HOH HOH . G 4 HOH A 15 259 36 HOH HOH . G 4 HOH A 16 260 37 HOH HOH . G 4 HOH A 17 261 39 HOH HOH . G 4 HOH A 18 262 40 HOH HOH . G 4 HOH A 19 263 41 HOH HOH . G 4 HOH A 20 264 42 HOH HOH . G 4 HOH A 21 265 44 HOH HOH . G 4 HOH A 22 266 46 HOH HOH . G 4 HOH A 23 267 47 HOH HOH . G 4 HOH A 24 268 48 HOH HOH . G 4 HOH A 25 269 49 HOH HOH . G 4 HOH A 26 270 53 HOH HOH . G 4 HOH A 27 271 54 HOH HOH . G 4 HOH A 28 272 56 HOH HOH . G 4 HOH A 29 273 57 HOH HOH . G 4 HOH A 30 274 63 HOH HOH . G 4 HOH A 31 275 64 HOH HOH . G 4 HOH A 32 276 66 HOH HOH . G 4 HOH A 33 277 67 HOH HOH . G 4 HOH A 34 278 68 HOH HOH . G 4 HOH A 35 279 69 HOH HOH . G 4 HOH A 36 280 70 HOH HOH . G 4 HOH A 37 281 72 HOH HOH . G 4 HOH A 38 282 73 HOH HOH . G 4 HOH A 39 283 74 HOH HOH . G 4 HOH A 40 284 75 HOH HOH . G 4 HOH A 41 285 82 HOH HOH . G 4 HOH A 42 286 86 HOH HOH . G 4 HOH A 43 287 89 HOH HOH . G 4 HOH A 44 288 91 HOH HOH . G 4 HOH A 45 289 99 HOH HOH . G 4 HOH A 46 290 100 HOH HOH . G 4 HOH A 47 291 101 HOH HOH . G 4 HOH A 48 292 107 HOH HOH . G 4 HOH A 49 293 108 HOH HOH . G 4 HOH A 50 294 110 HOH HOH . G 4 HOH A 51 295 111 HOH HOH . H 4 HOH B 1 245 2 HOH HOH . H 4 HOH B 2 246 4 HOH HOH . H 4 HOH B 3 247 6 HOH HOH . H 4 HOH B 4 248 7 HOH HOH . H 4 HOH B 5 249 8 HOH HOH . H 4 HOH B 6 250 11 HOH HOH . H 4 HOH B 7 251 14 HOH HOH . H 4 HOH B 8 252 15 HOH HOH . H 4 HOH B 9 253 21 HOH HOH . H 4 HOH B 10 254 22 HOH HOH . H 4 HOH B 11 255 24 HOH HOH . H 4 HOH B 12 256 25 HOH HOH . H 4 HOH B 13 257 27 HOH HOH . H 4 HOH B 14 258 28 HOH HOH . H 4 HOH B 15 259 29 HOH HOH . H 4 HOH B 16 260 30 HOH HOH . H 4 HOH B 17 261 31 HOH HOH . H 4 HOH B 18 262 32 HOH HOH . H 4 HOH B 19 263 33 HOH HOH . H 4 HOH B 20 264 34 HOH HOH . H 4 HOH B 21 265 35 HOH HOH . H 4 HOH B 22 266 38 HOH HOH . H 4 HOH B 23 267 43 HOH HOH . H 4 HOH B 24 268 45 HOH HOH . H 4 HOH B 25 269 50 HOH HOH . H 4 HOH B 26 270 51 HOH HOH . H 4 HOH B 27 271 52 HOH HOH . H 4 HOH B 28 272 55 HOH HOH . H 4 HOH B 29 273 58 HOH HOH . H 4 HOH B 30 274 59 HOH HOH . H 4 HOH B 31 275 60 HOH HOH . H 4 HOH B 32 276 61 HOH HOH . H 4 HOH B 33 277 62 HOH HOH . H 4 HOH B 34 278 65 HOH HOH . H 4 HOH B 35 279 71 HOH HOH . H 4 HOH B 36 280 76 HOH HOH . H 4 HOH B 37 281 77 HOH HOH . H 4 HOH B 38 282 78 HOH HOH . H 4 HOH B 39 283 79 HOH HOH . H 4 HOH B 40 284 80 HOH HOH . H 4 HOH B 41 285 81 HOH HOH . H 4 HOH B 42 286 83 HOH HOH . H 4 HOH B 43 287 84 HOH HOH . H 4 HOH B 44 288 85 HOH HOH . H 4 HOH B 45 289 87 HOH HOH . H 4 HOH B 46 290 88 HOH HOH . H 4 HOH B 47 291 90 HOH HOH . H 4 HOH B 48 292 92 HOH HOH . H 4 HOH B 49 293 93 HOH HOH . H 4 HOH B 50 294 94 HOH HOH . H 4 HOH B 51 295 95 HOH HOH . H 4 HOH B 52 296 96 HOH HOH . H 4 HOH B 53 297 97 HOH HOH . H 4 HOH B 54 298 98 HOH HOH . H 4 HOH B 55 299 102 HOH HOH . H 4 HOH B 56 300 103 HOH HOH . H 4 HOH B 57 301 104 HOH HOH . H 4 HOH B 58 302 105 HOH HOH . H 4 HOH B 59 303 106 HOH HOH . H 4 HOH B 60 304 109 HOH HOH . H 4 HOH B 61 305 112 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 29.091 _atom_site.Cartn_y -6.658 _atom_site.Cartn_z 54.338 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 36.59 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 244 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #