data_3EAH
#
_model_server_result.job_id            gpbenymJqFFcoHTkc25F6A 
_model_server_result.datetime_utc      '2024-11-13 18:33:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3eah 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":1867}' 
#
_entry.id    3EAH 
#
_exptl.entry_id    3EAH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S)-2-METHYL-2,4-PENTANEDIOL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3EAH 
_cell.length_a            71.09 
_cell.length_b            90.15 
_cell.length_c            156.1 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3EAH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 F N N 
? 5 H N N 
? 5 I N N 
? 5 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 29 A CYS 63 1_555 D ZN ZN . A ZN 862 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? 
metalc ? metalc2 A SG CYS 34 A CYS 68 1_555 D ZN ZN . A ZN 862 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? 
metalc ? metalc3 A SG CYS 119 A CYS 150 1_555 C FE HEC . A HEC 861 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? 
metalc ? metalc4 D ZN ZN . A ZN 862 1_555 B SG CYS 29 B CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? 
metalc ? metalc5 D ZN ZN . A ZN 862 1_555 B SG CYS 34 B CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? 
metalc ? metalc6 B SG CYS 119 B CYS 150 1_555 L FE HEC . B HEC 1861 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.6 ? 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MPD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S)-2-METHYL-2,4-PENTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MPD sing 350 n n 
C1 H11 MPD sing 351 n n 
C1 H12 MPD sing 352 n n 
C1 H13 MPD sing 353 n n 
C2 O2 MPD sing 354 n n 
C2 CM MPD sing 355 n n 
C2 C3 MPD sing 356 n n 
O2 HO2 MPD sing 357 n n 
CM HM1 MPD sing 358 n n 
CM HM2 MPD sing 359 n n 
CM HM3 MPD sing 360 n n 
C3 C4 MPD sing 361 n n 
C3 H31 MPD sing 362 n n 
C3 H32 MPD sing 363 n n 
C4 O4 MPD sing 364 n n 
C4 C5 MPD sing 365 n n 
C4 H4 MPD sing 366 n n 
O4 HO4 MPD sing 367 n n 
C5 H51 MPD sing 368 n n 
C5 H52 MPD sing 369 n n 
C5 H53 MPD sing 370 n n 
#
_atom_sites.entry_id                     3EAH 
_atom_sites.fract_transf_matrix[1][1]    0.014067 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011093 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006406 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEC A 1 861 861 HEC HEC . 
D 3 ZN A 1 862 862 ZN ZN . 
E 4 327 A 1 864 864 327 327 . 
F 5 MPD A 1 866 866 MPD MPD . 
G 6 CL A 1 1865 1865 CL CL . 
H 5 MPD A 1 1866 1866 MPD MPD . 
I 5 MPD A 1 1867 1867 MPD MPD . 
J 6 CL B 1 865 865 CL CL . 
K 5 MPD B 1 867 867 MPD MPD . 
L 2 HEC B 1 1861 1861 HEC HEC . 
M 4 327 B 1 1864 1864 327 327 . 
N 7 HOH A 1 1868 -39 HOH HOH . 
N 7 HOH A 2 1869 -38 HOH HOH . 
N 7 HOH A 3 1870 -37 HOH HOH . 
N 7 HOH A 4 1871 -36 HOH HOH . 
N 7 HOH A 5 1872 -35 HOH HOH . 
N 7 HOH A 6 1873 -34 HOH HOH . 
N 7 HOH A 7 1874 -33 HOH HOH . 
N 7 HOH A 8 1875 -32 HOH HOH . 
N 7 HOH A 9 1876 -31 HOH HOH . 
N 7 HOH A 10 1877 -30 HOH HOH . 
N 7 HOH A 11 1878 -29 HOH HOH . 
N 7 HOH A 12 1879 -28 HOH HOH . 
N 7 HOH A 13 1880 -27 HOH HOH . 
N 7 HOH A 14 1881 -26 HOH HOH . 
N 7 HOH A 15 1882 -25 HOH HOH . 
N 7 HOH A 16 1883 -24 HOH HOH . 
N 7 HOH A 17 1884 -23 HOH HOH . 
N 7 HOH A 18 1885 -22 HOH HOH . 
N 7 HOH A 19 1886 -21 HOH HOH . 
N 7 HOH A 20 1887 -20 HOH HOH . 
N 7 HOH A 21 1888 -19 HOH HOH . 
N 7 HOH A 22 1889 -18 HOH HOH . 
N 7 HOH A 23 1890 -17 HOH HOH . 
N 7 HOH A 24 1891 -16 HOH HOH . 
N 7 HOH A 25 1892 -15 HOH HOH . 
N 7 HOH A 26 1893 -13 HOH HOH . 
N 7 HOH A 27 1894 -12 HOH HOH . 
N 7 HOH A 28 1895 -11 HOH HOH . 
N 7 HOH A 29 1896 -10 HOH HOH . 
N 7 HOH A 30 1897 -9 HOH HOH . 
N 7 HOH A 31 1898 -8 HOH HOH . 
N 7 HOH A 32 1899 -7 HOH HOH . 
N 7 HOH A 33 1900 -6 HOH HOH . 
N 7 HOH A 34 1901 -5 HOH HOH . 
N 7 HOH A 35 1902 -4 HOH HOH . 
N 7 HOH A 36 1903 10 HOH HOH . 
N 7 HOH A 37 1904 19 HOH HOH . 
N 7 HOH A 38 1905 21 HOH HOH . 
N 7 HOH A 39 1906 31 HOH HOH . 
N 7 HOH A 40 1907 32 HOH HOH . 
N 7 HOH A 41 1908 33 HOH HOH . 
N 7 HOH A 42 1909 35 HOH HOH . 
N 7 HOH A 43 1910 36 HOH HOH . 
N 7 HOH A 44 1911 40 HOH HOH . 
N 7 HOH A 45 1912 42 HOH HOH . 
N 7 HOH A 46 1913 43 HOH HOH . 
N 7 HOH A 47 1914 44 HOH HOH . 
N 7 HOH A 48 1915 45 HOH HOH . 
N 7 HOH A 49 1916 47 HOH HOH . 
N 7 HOH A 50 1917 48 HOH HOH . 
N 7 HOH A 51 1918 49 HOH HOH . 
N 7 HOH A 52 1919 50 HOH HOH . 
N 7 HOH A 53 1920 51 HOH HOH . 
N 7 HOH A 54 1921 53 HOH HOH . 
N 7 HOH A 55 1922 54 HOH HOH . 
N 7 HOH A 56 1923 55 HOH HOH . 
N 7 HOH A 57 1924 56 HOH HOH . 
N 7 HOH A 58 1925 57 HOH HOH . 
N 7 HOH A 59 1926 58 HOH HOH . 
N 7 HOH A 60 1927 59 HOH HOH . 
N 7 HOH A 61 1928 60 HOH HOH . 
N 7 HOH A 62 1929 61 HOH HOH . 
N 7 HOH A 63 1930 62 HOH HOH . 
N 7 HOH A 64 1931 63 HOH HOH . 
N 7 HOH A 65 1932 64 HOH HOH . 
N 7 HOH A 66 1933 65 HOH HOH . 
N 7 HOH A 67 1934 67 HOH HOH . 
N 7 HOH A 68 1935 79 HOH HOH . 
N 7 HOH A 69 1936 81 HOH HOH . 
N 7 HOH A 70 1937 82 HOH HOH . 
N 7 HOH A 71 1938 84 HOH HOH . 
N 7 HOH A 72 1939 86 HOH HOH . 
N 7 HOH A 73 1940 93 HOH HOH . 
N 7 HOH A 74 1941 95 HOH HOH . 
N 7 HOH A 75 1942 96 HOH HOH . 
N 7 HOH A 76 1943 101 HOH HOH . 
N 7 HOH A 77 1944 102 HOH HOH . 
N 7 HOH A 78 1945 25 HOH HOH . 
O 7 HOH B 1 1865 -14 HOH HOH . 
O 7 HOH B 2 1866 -3 HOH HOH . 
O 7 HOH B 3 1867 -2 HOH HOH . 
O 7 HOH B 4 1868 -1 HOH HOH . 
O 7 HOH B 5 1869 0 HOH HOH . 
O 7 HOH B 6 1870 1 HOH HOH . 
O 7 HOH B 7 1871 2 HOH HOH . 
O 7 HOH B 8 1872 3 HOH HOH . 
O 7 HOH B 9 1873 4 HOH HOH . 
O 7 HOH B 10 1874 5 HOH HOH . 
O 7 HOH B 11 1875 6 HOH HOH . 
O 7 HOH B 12 1876 7 HOH HOH . 
O 7 HOH B 13 1877 8 HOH HOH . 
O 7 HOH B 14 1878 9 HOH HOH . 
O 7 HOH B 15 1879 11 HOH HOH . 
O 7 HOH B 16 1880 12 HOH HOH . 
O 7 HOH B 17 1881 13 HOH HOH . 
O 7 HOH B 18 1882 14 HOH HOH . 
O 7 HOH B 19 1883 15 HOH HOH . 
O 7 HOH B 20 1884 16 HOH HOH . 
O 7 HOH B 21 1885 17 HOH HOH . 
O 7 HOH B 22 1886 18 HOH HOH . 
O 7 HOH B 23 1887 20 HOH HOH . 
O 7 HOH B 24 1888 22 HOH HOH . 
O 7 HOH B 25 1889 23 HOH HOH . 
O 7 HOH B 26 1890 24 HOH HOH . 
O 7 HOH B 27 1892 26 HOH HOH . 
O 7 HOH B 28 1893 27 HOH HOH . 
O 7 HOH B 29 1894 28 HOH HOH . 
O 7 HOH B 30 1895 29 HOH HOH . 
O 7 HOH B 31 1896 30 HOH HOH . 
O 7 HOH B 32 1897 34 HOH HOH . 
O 7 HOH B 33 1898 37 HOH HOH . 
O 7 HOH B 34 1899 38 HOH HOH . 
O 7 HOH B 35 1900 39 HOH HOH . 
O 7 HOH B 36 1901 41 HOH HOH . 
O 7 HOH B 37 1902 46 HOH HOH . 
O 7 HOH B 38 1903 52 HOH HOH . 
O 7 HOH B 39 1904 66 HOH HOH . 
O 7 HOH B 40 1905 68 HOH HOH . 
O 7 HOH B 41 1906 69 HOH HOH . 
O 7 HOH B 42 1907 70 HOH HOH . 
O 7 HOH B 43 1908 71 HOH HOH . 
O 7 HOH B 44 1909 72 HOH HOH . 
O 7 HOH B 45 1910 73 HOH HOH . 
O 7 HOH B 46 1911 74 HOH HOH . 
O 7 HOH B 47 1912 75 HOH HOH . 
O 7 HOH B 48 1913 76 HOH HOH . 
O 7 HOH B 49 1914 77 HOH HOH . 
O 7 HOH B 50 1915 78 HOH HOH . 
O 7 HOH B 51 1916 80 HOH HOH . 
O 7 HOH B 52 1917 83 HOH HOH . 
O 7 HOH B 53 1918 85 HOH HOH . 
O 7 HOH B 54 1919 87 HOH HOH . 
O 7 HOH B 55 1920 88 HOH HOH . 
O 7 HOH B 56 1921 89 HOH HOH . 
O 7 HOH B 57 1922 90 HOH HOH . 
O 7 HOH B 58 1923 91 HOH HOH . 
O 7 HOH B 59 1924 92 HOH HOH . 
O 7 HOH B 60 1925 94 HOH HOH . 
O 7 HOH B 61 1926 97 HOH HOH . 
O 7 HOH B 62 1927 98 HOH HOH . 
O 7 HOH B 63 1928 99 HOH HOH . 
O 7 HOH B 64 1929 100 HOH HOH . 
O 7 HOH B 65 1930 103 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MPD . . . I 5 8.965 9.039 42.165 1 54.34 ? C1 MPD 1867 A 1 
HETATM 2 C C2 MPD . . . I 5 9.518 10.036 43.159 1 53.94 ? C2 MPD 1867 A 1 
HETATM 3 O O2 MPD . . . I 5 9.597 11.281 42.449 1 53.48 ? O2 MPD 1867 A 1 
HETATM 4 C CM MPD . . . I 5 8.629 10.195 44.348 1 54.09 ? CM MPD 1867 A 1 
HETATM 5 C C3 MPD . . . I 5 10.935 9.662 43.644 1 54.25 ? C3 MPD 1867 A 1 
HETATM 6 C C4 MPD . . . I 5 11.939 10.811 43.827 1 54.46 ? C4 MPD 1867 A 1 
HETATM 7 O O4 MPD . . . I 5 11.488 11.758 44.776 1 52.34 ? O4 MPD 1867 A 1 
HETATM 8 C C5 MPD . . . I 5 13.272 10.287 44.304 1 53.87 ? C5 MPD 1867 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    68 
_model_server_stats.query_time_ms           415 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           8 
#