data_3EAH # _model_server_result.job_id bzyF5OjI4U7odGJT-LxhKg _model_server_result.datetime_utc '2024-11-28 00:19:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3eah # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":866}' # _entry.id 3EAH # _exptl.entry_id 3EAH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3EAH _cell.length_a 71.09 _cell.length_b 90.15 _cell.length_c 156.1 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EAH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 H N N ? 5 I N N ? 5 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 29 A CYS 63 1_555 D ZN ZN . A ZN 862 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc2 A SG CYS 34 A CYS 68 1_555 D ZN ZN . A ZN 862 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc3 A SG CYS 119 A CYS 150 1_555 C FE HEC . A HEC 861 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc4 D ZN ZN . A ZN 862 1_555 B SG CYS 29 B CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc5 D ZN ZN . A ZN 862 1_555 B SG CYS 34 B CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc6 B SG CYS 119 B CYS 150 1_555 L FE HEC . B HEC 1861 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.6 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 350 n n C1 H11 MPD sing 351 n n C1 H12 MPD sing 352 n n C1 H13 MPD sing 353 n n C2 O2 MPD sing 354 n n C2 CM MPD sing 355 n n C2 C3 MPD sing 356 n n O2 HO2 MPD sing 357 n n CM HM1 MPD sing 358 n n CM HM2 MPD sing 359 n n CM HM3 MPD sing 360 n n C3 C4 MPD sing 361 n n C3 H31 MPD sing 362 n n C3 H32 MPD sing 363 n n C4 O4 MPD sing 364 n n C4 C5 MPD sing 365 n n C4 H4 MPD sing 366 n n O4 HO4 MPD sing 367 n n C5 H51 MPD sing 368 n n C5 H52 MPD sing 369 n n C5 H53 MPD sing 370 n n # _atom_sites.entry_id 3EAH _atom_sites.fract_transf_matrix[1][1] 0.014067 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011093 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006406 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEC A 1 861 861 HEC HEC . D 3 ZN A 1 862 862 ZN ZN . E 4 327 A 1 864 864 327 327 . F 5 MPD A 1 866 866 MPD MPD . G 6 CL A 1 1865 1865 CL CL . H 5 MPD A 1 1866 1866 MPD MPD . I 5 MPD A 1 1867 1867 MPD MPD . J 6 CL B 1 865 865 CL CL . K 5 MPD B 1 867 867 MPD MPD . L 2 HEC B 1 1861 1861 HEC HEC . M 4 327 B 1 1864 1864 327 327 . N 7 HOH A 1 1868 -39 HOH HOH . N 7 HOH A 2 1869 -38 HOH HOH . N 7 HOH A 3 1870 -37 HOH HOH . N 7 HOH A 4 1871 -36 HOH HOH . N 7 HOH A 5 1872 -35 HOH HOH . N 7 HOH A 6 1873 -34 HOH HOH . N 7 HOH A 7 1874 -33 HOH HOH . N 7 HOH A 8 1875 -32 HOH HOH . N 7 HOH A 9 1876 -31 HOH HOH . N 7 HOH A 10 1877 -30 HOH HOH . N 7 HOH A 11 1878 -29 HOH HOH . N 7 HOH A 12 1879 -28 HOH HOH . N 7 HOH A 13 1880 -27 HOH HOH . N 7 HOH A 14 1881 -26 HOH HOH . N 7 HOH A 15 1882 -25 HOH HOH . N 7 HOH A 16 1883 -24 HOH HOH . N 7 HOH A 17 1884 -23 HOH HOH . N 7 HOH A 18 1885 -22 HOH HOH . N 7 HOH A 19 1886 -21 HOH HOH . N 7 HOH A 20 1887 -20 HOH HOH . N 7 HOH A 21 1888 -19 HOH HOH . N 7 HOH A 22 1889 -18 HOH HOH . N 7 HOH A 23 1890 -17 HOH HOH . N 7 HOH A 24 1891 -16 HOH HOH . N 7 HOH A 25 1892 -15 HOH HOH . N 7 HOH A 26 1893 -13 HOH HOH . N 7 HOH A 27 1894 -12 HOH HOH . N 7 HOH A 28 1895 -11 HOH HOH . N 7 HOH A 29 1896 -10 HOH HOH . N 7 HOH A 30 1897 -9 HOH HOH . N 7 HOH A 31 1898 -8 HOH HOH . N 7 HOH A 32 1899 -7 HOH HOH . N 7 HOH A 33 1900 -6 HOH HOH . N 7 HOH A 34 1901 -5 HOH HOH . N 7 HOH A 35 1902 -4 HOH HOH . N 7 HOH A 36 1903 10 HOH HOH . N 7 HOH A 37 1904 19 HOH HOH . N 7 HOH A 38 1905 21 HOH HOH . N 7 HOH A 39 1906 31 HOH HOH . N 7 HOH A 40 1907 32 HOH HOH . N 7 HOH A 41 1908 33 HOH HOH . N 7 HOH A 42 1909 35 HOH HOH . N 7 HOH A 43 1910 36 HOH HOH . N 7 HOH A 44 1911 40 HOH HOH . N 7 HOH A 45 1912 42 HOH HOH . N 7 HOH A 46 1913 43 HOH HOH . N 7 HOH A 47 1914 44 HOH HOH . N 7 HOH A 48 1915 45 HOH HOH . N 7 HOH A 49 1916 47 HOH HOH . N 7 HOH A 50 1917 48 HOH HOH . N 7 HOH A 51 1918 49 HOH HOH . N 7 HOH A 52 1919 50 HOH HOH . N 7 HOH A 53 1920 51 HOH HOH . N 7 HOH A 54 1921 53 HOH HOH . N 7 HOH A 55 1922 54 HOH HOH . N 7 HOH A 56 1923 55 HOH HOH . N 7 HOH A 57 1924 56 HOH HOH . N 7 HOH A 58 1925 57 HOH HOH . N 7 HOH A 59 1926 58 HOH HOH . N 7 HOH A 60 1927 59 HOH HOH . N 7 HOH A 61 1928 60 HOH HOH . N 7 HOH A 62 1929 61 HOH HOH . N 7 HOH A 63 1930 62 HOH HOH . N 7 HOH A 64 1931 63 HOH HOH . N 7 HOH A 65 1932 64 HOH HOH . N 7 HOH A 66 1933 65 HOH HOH . N 7 HOH A 67 1934 67 HOH HOH . N 7 HOH A 68 1935 79 HOH HOH . N 7 HOH A 69 1936 81 HOH HOH . N 7 HOH A 70 1937 82 HOH HOH . N 7 HOH A 71 1938 84 HOH HOH . N 7 HOH A 72 1939 86 HOH HOH . N 7 HOH A 73 1940 93 HOH HOH . N 7 HOH A 74 1941 95 HOH HOH . N 7 HOH A 75 1942 96 HOH HOH . N 7 HOH A 76 1943 101 HOH HOH . N 7 HOH A 77 1944 102 HOH HOH . N 7 HOH A 78 1945 25 HOH HOH . O 7 HOH B 1 1865 -14 HOH HOH . O 7 HOH B 2 1866 -3 HOH HOH . O 7 HOH B 3 1867 -2 HOH HOH . O 7 HOH B 4 1868 -1 HOH HOH . O 7 HOH B 5 1869 0 HOH HOH . O 7 HOH B 6 1870 1 HOH HOH . O 7 HOH B 7 1871 2 HOH HOH . O 7 HOH B 8 1872 3 HOH HOH . O 7 HOH B 9 1873 4 HOH HOH . O 7 HOH B 10 1874 5 HOH HOH . O 7 HOH B 11 1875 6 HOH HOH . O 7 HOH B 12 1876 7 HOH HOH . O 7 HOH B 13 1877 8 HOH HOH . O 7 HOH B 14 1878 9 HOH HOH . O 7 HOH B 15 1879 11 HOH HOH . O 7 HOH B 16 1880 12 HOH HOH . O 7 HOH B 17 1881 13 HOH HOH . O 7 HOH B 18 1882 14 HOH HOH . O 7 HOH B 19 1883 15 HOH HOH . O 7 HOH B 20 1884 16 HOH HOH . O 7 HOH B 21 1885 17 HOH HOH . O 7 HOH B 22 1886 18 HOH HOH . O 7 HOH B 23 1887 20 HOH HOH . O 7 HOH B 24 1888 22 HOH HOH . O 7 HOH B 25 1889 23 HOH HOH . O 7 HOH B 26 1890 24 HOH HOH . O 7 HOH B 27 1892 26 HOH HOH . O 7 HOH B 28 1893 27 HOH HOH . O 7 HOH B 29 1894 28 HOH HOH . O 7 HOH B 30 1895 29 HOH HOH . O 7 HOH B 31 1896 30 HOH HOH . O 7 HOH B 32 1897 34 HOH HOH . O 7 HOH B 33 1898 37 HOH HOH . O 7 HOH B 34 1899 38 HOH HOH . O 7 HOH B 35 1900 39 HOH HOH . O 7 HOH B 36 1901 41 HOH HOH . O 7 HOH B 37 1902 46 HOH HOH . O 7 HOH B 38 1903 52 HOH HOH . O 7 HOH B 39 1904 66 HOH HOH . O 7 HOH B 40 1905 68 HOH HOH . O 7 HOH B 41 1906 69 HOH HOH . O 7 HOH B 42 1907 70 HOH HOH . O 7 HOH B 43 1908 71 HOH HOH . O 7 HOH B 44 1909 72 HOH HOH . O 7 HOH B 45 1910 73 HOH HOH . O 7 HOH B 46 1911 74 HOH HOH . O 7 HOH B 47 1912 75 HOH HOH . O 7 HOH B 48 1913 76 HOH HOH . O 7 HOH B 49 1914 77 HOH HOH . O 7 HOH B 50 1915 78 HOH HOH . O 7 HOH B 51 1916 80 HOH HOH . O 7 HOH B 52 1917 83 HOH HOH . O 7 HOH B 53 1918 85 HOH HOH . O 7 HOH B 54 1919 87 HOH HOH . O 7 HOH B 55 1920 88 HOH HOH . O 7 HOH B 56 1921 89 HOH HOH . O 7 HOH B 57 1922 90 HOH HOH . O 7 HOH B 58 1923 91 HOH HOH . O 7 HOH B 59 1924 92 HOH HOH . O 7 HOH B 60 1925 94 HOH HOH . O 7 HOH B 61 1926 97 HOH HOH . O 7 HOH B 62 1927 98 HOH HOH . O 7 HOH B 63 1928 99 HOH HOH . O 7 HOH B 64 1929 100 HOH HOH . O 7 HOH B 65 1930 103 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . F 5 26.838 11.452 39.744 1 67.05 ? C1 MPD 866 A 1 HETATM 2 C C2 MPD . . . F 5 26.45 11.744 38.306 1 66.99 ? C2 MPD 866 A 1 HETATM 3 O O2 MPD . . . F 5 26.886 13.09 38.023 1 67.5 ? O2 MPD 866 A 1 HETATM 4 C CM MPD . . . F 5 27.125 10.821 37.376 1 67.12 ? CM MPD 866 A 1 HETATM 5 C C3 MPD . . . F 5 24.91 11.745 38.074 1 68.16 ? C3 MPD 866 A 1 HETATM 6 C C4 MPD . . . F 5 24.253 10.583 37.316 1 69.87 ? C4 MPD 866 A 1 HETATM 7 O O4 MPD . . . F 5 24.463 9.344 37.975 1 71.28 ? O4 MPD 866 A 1 HETATM 8 C C5 MPD . . . F 5 22.757 10.803 37.204 1 68.93 ? C5 MPD 866 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #