data_3EAM # _model_server_result.job_id iXEjCitO-XBOsYhRbiDaZw _model_server_result.datetime_utc '2024-11-08 03:39:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3eam # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":501}' # _entry.id 3EAM # _exptl.entry_id 3EAM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 510.615 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECYL-BETA-D-MALTOSIDE _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.94 _cell.angle_gamma 90 _cell.entry_id 3EAM _cell.length_a 183.32 _cell.length_b 133.64 _cell.length_c 160.18 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EAM _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 F N N ? 2 K N N ? 2 N N N ? 2 P N N ? 2 V N N ? 2 W N N # _chem_comp.formula 'C24 H46 O11' _chem_comp.formula_weight 510.615 _chem_comp.id LMT _chem_comp.mon_nstd_flag . _chem_comp.name DODECYL-BETA-D-MALTOSIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1B C2B LMT sing 194 n n C1B O1B LMT sing 195 n n C1B O5B LMT sing 196 n n C1B H1B LMT sing 197 n n C2B C3B LMT sing 198 n n C2B O2B LMT sing 199 n n C2B H2B LMT sing 200 n n C3B C4B LMT sing 201 n n C3B O3B LMT sing 202 n n C3B H3B LMT sing 203 n n C4B C5B LMT sing 204 n n C4B O4' LMT sing 205 n n C4B H4B LMT sing 206 n n C5B C6B LMT sing 207 n n C5B O5B LMT sing 208 n n C5B H5B LMT sing 209 n n C6B O6B LMT sing 210 n n C6B "H6'2" LMT sing 211 n n C6B "H6'1" LMT sing 212 n n O1B C4' LMT sing 213 n n O2B H2O1 LMT sing 214 n n O3B H3O1 LMT sing 215 n n O4' H4O1 LMT sing 216 n n O6B H6B LMT sing 217 n n C1' C2' LMT sing 218 n n C1' O1' LMT sing 219 n n C1' O5' LMT sing 220 n n C1' H1' LMT sing 221 n n C2' C3' LMT sing 222 n n C2' O2' LMT sing 223 n n C2' H2' LMT sing 224 n n C3' C4' LMT sing 225 n n C3' O3' LMT sing 226 n n C3' H3' LMT sing 227 n n C4' C5' LMT sing 228 n n C4' H4' LMT sing 229 n n C5' C6' LMT sing 230 n n C5' O5' LMT sing 231 n n C5' H5' LMT sing 232 n n C6' O6' LMT sing 233 n n C6' H6D LMT sing 234 n n C6' H6E LMT sing 235 n n O1' C1 LMT sing 236 n n O2' H2O2 LMT sing 237 n n O3' H3O2 LMT sing 238 n n O6' H6' LMT sing 239 n n C1 C2 LMT sing 240 n n C1 H12 LMT sing 241 n n C1 H11 LMT sing 242 n n C2 C3 LMT sing 243 n n C2 H22 LMT sing 244 n n C2 H21 LMT sing 245 n n C3 C4 LMT sing 246 n n C3 H32 LMT sing 247 n n C3 H31 LMT sing 248 n n C4 C5 LMT sing 249 n n C4 H42 LMT sing 250 n n C4 H41 LMT sing 251 n n C5 C6 LMT sing 252 n n C5 H52 LMT sing 253 n n C5 H51 LMT sing 254 n n C6 C7 LMT sing 255 n n C6 H62 LMT sing 256 n n C6 H61 LMT sing 257 n n C7 C8 LMT sing 258 n n C7 H72 LMT sing 259 n n C7 H71 LMT sing 260 n n C8 C9 LMT sing 261 n n C8 H82 LMT sing 262 n n C8 H81 LMT sing 263 n n C9 C10 LMT sing 264 n n C9 H92 LMT sing 265 n n C9 H91 LMT sing 266 n n C10 C11 LMT sing 267 n n C10 H102 LMT sing 268 n n C10 H101 LMT sing 269 n n C11 C12 LMT sing 270 n n C11 H112 LMT sing 271 n n C11 H111 LMT sing 272 n n C12 H123 LMT sing 273 n n C12 H122 LMT sing 274 n n C12 H121 LMT sing 275 n n # _atom_sites.entry_id 3EAM _atom_sites.fract_transf_matrix[1][1] 0.005455 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001253 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007483 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006406 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 LMT A 1 501 501 LMT LMT . G 3 PC1 A 1 602 602 PC1 PC1 . H 3 PC1 A 1 603 603 PC1 PC1 . I 3 PC1 A 1 601 601 PC1 PC1 . J 3 PC1 B 1 601 601 PC1 PC1 . K 2 LMT B 1 501 501 LMT LMT . L 3 PC1 B 1 602 602 PC1 PC1 . M 3 PC1 B 1 603 603 PC1 PC1 . N 2 LMT C 1 502 502 LMT LMT . O 3 PC1 C 1 601 601 PC1 PC1 . P 2 LMT C 1 501 501 LMT LMT . Q 3 PC1 C 1 602 602 PC1 PC1 . R 3 PC1 C 1 603 603 PC1 PC1 . S 3 PC1 D 1 601 601 PC1 PC1 . T 3 PC1 D 1 602 602 PC1 PC1 . U 3 PC1 D 1 603 603 PC1 PC1 . V 2 LMT E 1 501 501 LMT LMT . W 2 LMT E 1 602 501 LMT LMT . X 3 PC1 E 1 601 601 PC1 PC1 . Y 3 PC1 E 1 603 602 PC1 PC1 . Z 3 PC1 E 1 604 603 PC1 PC1 . AA 4 HOH A 1 604 401 HOH HOH . AA 4 HOH A 2 605 402 HOH HOH . AA 4 HOH A 3 606 405 HOH HOH . AA 4 HOH A 4 607 407 HOH HOH . AA 4 HOH A 5 608 408 HOH HOH . AA 4 HOH A 6 609 409 HOH HOH . AA 4 HOH A 7 610 412 HOH HOH . AA 4 HOH A 8 611 413 HOH HOH . AA 4 HOH A 9 612 414 HOH HOH . AA 4 HOH A 10 613 415 HOH HOH . AA 4 HOH A 11 614 416 HOH HOH . AA 4 HOH A 12 615 417 HOH HOH . AA 4 HOH A 13 616 418 HOH HOH . AA 4 HOH A 14 617 419 HOH HOH . AA 4 HOH A 15 618 424 HOH HOH . AA 4 HOH A 16 619 426 HOH HOH . AA 4 HOH A 17 620 428 HOH HOH . AA 4 HOH A 18 621 430 HOH HOH . AA 4 HOH A 19 622 406 HOH HOH . AA 4 HOH A 20 623 414 HOH HOH . BA 4 HOH B 1 604 404 HOH HOH . BA 4 HOH B 2 605 406 HOH HOH . BA 4 HOH B 3 606 401 HOH HOH . BA 4 HOH B 4 607 402 HOH HOH . BA 4 HOH B 5 608 403 HOH HOH . BA 4 HOH B 6 609 404 HOH HOH . BA 4 HOH B 7 610 405 HOH HOH . BA 4 HOH B 8 611 407 HOH HOH . BA 4 HOH B 9 612 408 HOH HOH . BA 4 HOH B 10 613 409 HOH HOH . BA 4 HOH B 11 614 410 HOH HOH . BA 4 HOH B 12 615 411 HOH HOH . BA 4 HOH B 13 616 413 HOH HOH . BA 4 HOH B 14 617 414 HOH HOH . BA 4 HOH B 15 618 415 HOH HOH . BA 4 HOH B 16 619 416 HOH HOH . BA 4 HOH B 17 620 417 HOH HOH . BA 4 HOH B 18 621 418 HOH HOH . BA 4 HOH B 19 622 421 HOH HOH . BA 4 HOH B 20 623 422 HOH HOH . BA 4 HOH B 21 624 423 HOH HOH . BA 4 HOH B 22 625 425 HOH HOH . BA 4 HOH B 23 626 429 HOH HOH . BA 4 HOH B 24 627 430 HOH HOH . CA 4 HOH C 1 401 401 HOH HOH . CA 4 HOH C 2 402 402 HOH HOH . CA 4 HOH C 3 403 403 HOH HOH . CA 4 HOH C 4 405 405 HOH HOH . CA 4 HOH C 5 406 406 HOH HOH . CA 4 HOH C 6 407 407 HOH HOH . CA 4 HOH C 7 408 408 HOH HOH . CA 4 HOH C 8 409 409 HOH HOH . CA 4 HOH C 9 410 410 HOH HOH . CA 4 HOH C 10 411 411 HOH HOH . CA 4 HOH C 11 412 412 HOH HOH . CA 4 HOH C 12 413 413 HOH HOH . CA 4 HOH C 13 414 414 HOH HOH . CA 4 HOH C 14 415 415 HOH HOH . CA 4 HOH C 15 416 416 HOH HOH . CA 4 HOH C 16 417 417 HOH HOH . CA 4 HOH C 17 418 418 HOH HOH . CA 4 HOH C 18 420 420 HOH HOH . CA 4 HOH C 19 421 421 HOH HOH . CA 4 HOH C 20 428 428 HOH HOH . CA 4 HOH C 21 429 429 HOH HOH . DA 4 HOH D 1 604 403 HOH HOH . DA 4 HOH D 2 605 406 HOH HOH . DA 4 HOH D 3 606 419 HOH HOH . DA 4 HOH D 4 607 404 HOH HOH . DA 4 HOH D 5 608 401 HOH HOH . DA 4 HOH D 6 609 402 HOH HOH . DA 4 HOH D 7 610 405 HOH HOH . DA 4 HOH D 8 611 407 HOH HOH . DA 4 HOH D 9 612 408 HOH HOH . DA 4 HOH D 10 613 409 HOH HOH . DA 4 HOH D 11 614 410 HOH HOH . DA 4 HOH D 12 615 412 HOH HOH . DA 4 HOH D 13 616 413 HOH HOH . DA 4 HOH D 14 617 414 HOH HOH . DA 4 HOH D 15 618 415 HOH HOH . DA 4 HOH D 16 619 416 HOH HOH . DA 4 HOH D 17 620 417 HOH HOH . DA 4 HOH D 18 621 419 HOH HOH . DA 4 HOH D 19 622 420 HOH HOH . DA 4 HOH D 20 623 421 HOH HOH . DA 4 HOH D 21 624 425 HOH HOH . DA 4 HOH D 22 625 428 HOH HOH . DA 4 HOH D 23 626 429 HOH HOH . DA 4 HOH D 24 627 430 HOH HOH . EA 4 HOH E 1 605 421 HOH HOH . EA 4 HOH E 2 606 403 HOH HOH . EA 4 HOH E 3 607 404 HOH HOH . EA 4 HOH E 4 608 406 HOH HOH . EA 4 HOH E 5 609 401 HOH HOH . EA 4 HOH E 6 610 402 HOH HOH . EA 4 HOH E 7 611 403 HOH HOH . EA 4 HOH E 8 612 404 HOH HOH . EA 4 HOH E 9 613 405 HOH HOH . EA 4 HOH E 10 614 408 HOH HOH . EA 4 HOH E 11 615 407 HOH HOH . EA 4 HOH E 12 616 409 HOH HOH . EA 4 HOH E 13 617 411 HOH HOH . EA 4 HOH E 14 618 412 HOH HOH . EA 4 HOH E 15 619 413 HOH HOH . EA 4 HOH E 16 620 415 HOH HOH . EA 4 HOH E 17 621 416 HOH HOH . EA 4 HOH E 18 622 417 HOH HOH . EA 4 HOH E 19 623 418 HOH HOH . EA 4 HOH E 20 624 419 HOH HOH . EA 4 HOH E 21 625 420 HOH HOH . EA 4 HOH E 22 626 428 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1B LMT . . . V 2 56.175 -26.664 27.842 1 128.04 ? C1B LMT 501 E 1 HETATM 2 C C2B LMT . . . V 2 55.619 -27.797 26.958 1 128.93 ? C2B LMT 501 E 1 HETATM 3 C C3B LMT . . . V 2 54.255 -28.236 27.498 1 130.29 ? C3B LMT 501 E 1 HETATM 4 C C4B LMT . . . V 2 53.289 -27.041 27.728 1 131.45 ? C4B LMT 501 E 1 HETATM 5 C C5B LMT . . . V 2 53.921 -25.829 28.461 1 130.38 ? C5B LMT 501 E 1 HETATM 6 C C6B LMT . . . V 2 53.996 -24.523 27.655 1 129.44 ? C6B LMT 501 E 1 HETATM 7 O O1B LMT . . . V 2 57.47 -27.055 28.411 1 123.05 ? O1B LMT 501 E 1 HETATM 8 O O2B LMT . . . V 2 55.588 -27.387 25.571 1 126.14 ? O2B LMT 501 E 1 HETATM 9 O O3B LMT . . . V 2 53.743 -29.252 26.615 1 129.14 ? O3B LMT 501 E 1 HETATM 10 O O4' LMT . . . V 2 52.728 -26.622 26.475 1 132.95 ? O4' LMT 501 E 1 HETATM 11 O O5B LMT . . . V 2 55.242 -26.188 28.871 1 129.8 ? O5B LMT 501 E 1 HETATM 12 O O6B LMT . . . V 2 55.149 -23.699 27.958 1 128.18 ? O6B LMT 501 E 1 HETATM 13 C C1' LMT . . . V 2 56.81 -28.006 32.215 1 101.54 ? C1' LMT 501 E 1 HETATM 14 C C2' LMT . . . V 2 56.928 -26.487 32.069 1 107.69 ? C2' LMT 501 E 1 HETATM 15 C C3' LMT . . . V 2 57.578 -26.131 30.726 1 112.7 ? C3' LMT 501 E 1 HETATM 16 C C4' LMT . . . V 2 57.335 -27.347 29.813 1 115.42 ? C4' LMT 501 E 1 HETATM 17 C C5' LMT . . . V 2 58.114 -28.583 30.267 1 111.27 ? C5' LMT 501 E 1 HETATM 18 C C6' LMT . . . V 2 57.651 -29.858 29.501 1 109.56 ? C6' LMT 501 E 1 HETATM 19 O O1' LMT . . . V 2 56.545 -28.279 33.597 1 89.37 ? O1' LMT 501 E 1 HETATM 20 O O2' LMT . . . V 2 55.627 -25.865 32.227 1 107.95 ? O2' LMT 501 E 1 HETATM 21 O O3' LMT . . . V 2 56.977 -24.924 30.194 1 114.12 ? O3' LMT 501 E 1 HETATM 22 O O5' LMT . . . V 2 58.017 -28.638 31.715 1 106.67 ? O5' LMT 501 E 1 HETATM 23 O O6' LMT . . . V 2 56.251 -30.184 29.608 1 107.2 ? O6' LMT 501 E 1 HETATM 24 C C1 LMT . . . V 2 57.6 -27.754 34.398 1 75.02 ? C1 LMT 501 E 1 HETATM 25 C C2 LMT . . . V 2 57.21 -27.718 35.862 1 61.92 ? C2 LMT 501 E 1 HETATM 26 C C3 LMT . . . V 2 58.175 -28.553 36.667 1 50.46 ? C3 LMT 501 E 1 HETATM 27 C C4 LMT . . . V 2 57.41 -29.161 37.803 1 41.48 ? C4 LMT 501 E 1 HETATM 28 C C5 LMT . . . V 2 57.969 -28.681 39.1 1 34.56 ? C5 LMT 501 E 1 HETATM 29 C C6 LMT . . . V 2 58.364 -29.869 39.918 1 31.46 ? C6 LMT 501 E 1 HETATM 30 C C7 LMT . . . V 2 58.573 -29.414 41.358 1 31.56 ? C7 LMT 501 E 1 HETATM 31 C C8 LMT . . . V 2 58.496 -30.563 42.378 1 27.51 ? C8 LMT 501 E 1 HETATM 32 C C9 LMT . . . V 2 59.035 -30.063 43.699 1 25.39 ? C9 LMT 501 E 1 HETATM 33 C C10 LMT . . . V 2 58.564 -31.008 44.782 1 28.54 ? C10 LMT 501 E 1 HETATM 34 C C11 LMT . . . V 2 59.403 -30.76 46.021 1 30.41 ? C11 LMT 501 E 1 HETATM 35 C C12 LMT . . . V 2 58.96 -31.701 47.111 1 33.5 ? C12 LMT 501 E 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 35 #