data_3EAM
#
_model_server_result.job_id            wLkrUoz2YX23H5RSdRJDYA 
_model_server_result.datetime_utc      '2024-11-08 04:00:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3eam 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"U","auth_seq_id":603}' 
#
_entry.id    3EAM 
#
_exptl.entry_id    3EAM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              790.145 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_entity.pdbx_number_of_molecules    15 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          102.94 
_cell.angle_gamma         90 
_cell.entry_id            3EAM 
_cell.length_a            183.32 
_cell.length_b            133.64 
_cell.length_c            160.18 
_cell.Z_PDB               20 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3EAM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 L N N 
? 3 M N N 
? 3 O N N 
? 3 Q N N 
? 3 R N N 
? 3 S N N 
? 3 T N N 
? 3 U N N 
? 3 X N N 
? 3 Y N N 
? 3 Z N N 
#
_chem_comp.formula           'C44 H88 N O8 P' 
_chem_comp.formula_weight    790.145 
_chem_comp.id                PC1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     3-SN-PHOSPHATIDYLCHOLINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O12 P PC1 sing 319 n n 
P O14 PC1 doub 320 n n 
P O13 PC1 sing 321 n n 
P O11 PC1 sing 322 n n 
O13 C11 PC1 sing 323 n n 
C11 C12 PC1 sing 324 n n 
C11 H111 PC1 sing 325 n n 
C11 H112 PC1 sing 326 n n 
C12 N PC1 sing 327 n n 
C12 H121 PC1 sing 328 n n 
C12 H122 PC1 sing 329 n n 
N C13 PC1 sing 330 n n 
N C14 PC1 sing 331 n n 
N C15 PC1 sing 332 n n 
C13 H131 PC1 sing 333 n n 
C13 H132 PC1 sing 334 n n 
C13 H133 PC1 sing 335 n n 
C14 H141 PC1 sing 336 n n 
C14 H142 PC1 sing 337 n n 
C14 H143 PC1 sing 338 n n 
C15 H151 PC1 sing 339 n n 
C15 H152 PC1 sing 340 n n 
C15 H153 PC1 sing 341 n n 
O11 C1 PC1 sing 342 n n 
C1 C2 PC1 sing 343 n n 
C1 H11 PC1 sing 344 n n 
C1 H12 PC1 sing 345 n n 
C2 O21 PC1 sing 346 n n 
C2 C3 PC1 sing 347 n n 
C2 H2 PC1 sing 348 n n 
O21 C21 PC1 sing 349 n n 
C21 O22 PC1 doub 350 n n 
C21 C22 PC1 sing 351 n n 
C22 C23 PC1 sing 352 n n 
C22 H221 PC1 sing 353 n n 
C22 H222 PC1 sing 354 n n 
C23 C24 PC1 sing 355 n n 
C23 H231 PC1 sing 356 n n 
C23 H232 PC1 sing 357 n n 
C24 C25 PC1 sing 358 n n 
C24 H241 PC1 sing 359 n n 
C24 H242 PC1 sing 360 n n 
C25 C26 PC1 sing 361 n n 
C25 H251 PC1 sing 362 n n 
C25 H252 PC1 sing 363 n n 
C26 C27 PC1 sing 364 n n 
C26 H261 PC1 sing 365 n n 
C26 H262 PC1 sing 366 n n 
C27 C28 PC1 sing 367 n n 
C27 H271 PC1 sing 368 n n 
C27 H272 PC1 sing 369 n n 
C28 C29 PC1 sing 370 n n 
C28 H281 PC1 sing 371 n n 
C28 H282 PC1 sing 372 n n 
C29 C2A PC1 sing 373 n n 
C29 H291 PC1 sing 374 n n 
C29 H292 PC1 sing 375 n n 
C2A C2B PC1 sing 376 n n 
C2A H2A1 PC1 sing 377 n n 
C2A H2A2 PC1 sing 378 n n 
C2B C2C PC1 sing 379 n n 
C2B H2B1 PC1 sing 380 n n 
C2B H2B2 PC1 sing 381 n n 
C2C C2D PC1 sing 382 n n 
C2C H2C1 PC1 sing 383 n n 
C2C H2C2 PC1 sing 384 n n 
C2D C2E PC1 sing 385 n n 
C2D H2D1 PC1 sing 386 n n 
C2D H2D2 PC1 sing 387 n n 
C2E C2F PC1 sing 388 n n 
C2E H2E1 PC1 sing 389 n n 
C2E H2E2 PC1 sing 390 n n 
C2F C2G PC1 sing 391 n n 
C2F H2F1 PC1 sing 392 n n 
C2F H2F2 PC1 sing 393 n n 
C2G C2H PC1 sing 394 n n 
C2G H2G1 PC1 sing 395 n n 
C2G H2G2 PC1 sing 396 n n 
C2H C2I PC1 sing 397 n n 
C2H H2H1 PC1 sing 398 n n 
C2H H2H2 PC1 sing 399 n n 
C2I H2I1 PC1 sing 400 n n 
C2I H2I2 PC1 sing 401 n n 
C2I H2I3 PC1 sing 402 n n 
C3 O31 PC1 sing 403 n n 
C3 H31 PC1 sing 404 n n 
C3 H32 PC1 sing 405 n n 
O31 C31 PC1 sing 406 n n 
C31 O32 PC1 doub 407 n n 
C31 C32 PC1 sing 408 n n 
C32 C33 PC1 sing 409 n n 
C32 H321 PC1 sing 410 n n 
C32 H322 PC1 sing 411 n n 
C33 C34 PC1 sing 412 n n 
C33 H331 PC1 sing 413 n n 
C33 H332 PC1 sing 414 n n 
C34 C35 PC1 sing 415 n n 
C34 H341 PC1 sing 416 n n 
C34 H342 PC1 sing 417 n n 
C35 C36 PC1 sing 418 n n 
C35 H351 PC1 sing 419 n n 
C35 H352 PC1 sing 420 n n 
C36 C37 PC1 sing 421 n n 
C36 H361 PC1 sing 422 n n 
C36 H362 PC1 sing 423 n n 
C37 C38 PC1 sing 424 n n 
C37 H371 PC1 sing 425 n n 
C37 H372 PC1 sing 426 n n 
C38 C39 PC1 sing 427 n n 
C38 H381 PC1 sing 428 n n 
C38 H382 PC1 sing 429 n n 
C39 C3A PC1 sing 430 n n 
C39 H391 PC1 sing 431 n n 
C39 H392 PC1 sing 432 n n 
C3A C3B PC1 sing 433 n n 
C3A H3A1 PC1 sing 434 n n 
C3A H3A2 PC1 sing 435 n n 
C3B C3C PC1 sing 436 n n 
C3B H3B1 PC1 sing 437 n n 
C3B H3B2 PC1 sing 438 n n 
C3C C3D PC1 sing 439 n n 
C3C H3C1 PC1 sing 440 n n 
C3C H3C2 PC1 sing 441 n n 
C3D C3E PC1 sing 442 n n 
C3D H3D1 PC1 sing 443 n n 
C3D H3D2 PC1 sing 444 n n 
C3E C3F PC1 sing 445 n n 
C3E H3E1 PC1 sing 446 n n 
C3E H3E2 PC1 sing 447 n n 
C3F C3G PC1 sing 448 n n 
C3F H3F1 PC1 sing 449 n n 
C3F H3F2 PC1 sing 450 n n 
C3G C3H PC1 sing 451 n n 
C3G H3G1 PC1 sing 452 n n 
C3G H3G2 PC1 sing 453 n n 
C3H C3I PC1 sing 454 n n 
C3H H3H1 PC1 sing 455 n n 
C3H H3H2 PC1 sing 456 n n 
C3I H3I1 PC1 sing 457 n n 
C3I H3I2 PC1 sing 458 n n 
C3I H3I3 PC1 sing 459 n n 
#
_atom_sites.entry_id                     3EAM 
_atom_sites.fract_transf_matrix[1][1]    0.005455 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001253 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007483 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006406 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 LMT A 1 501 501 LMT LMT . 
G 3 PC1 A 1 602 602 PC1 PC1 . 
H 3 PC1 A 1 603 603 PC1 PC1 . 
I 3 PC1 A 1 601 601 PC1 PC1 . 
J 3 PC1 B 1 601 601 PC1 PC1 . 
K 2 LMT B 1 501 501 LMT LMT . 
L 3 PC1 B 1 602 602 PC1 PC1 . 
M 3 PC1 B 1 603 603 PC1 PC1 . 
N 2 LMT C 1 502 502 LMT LMT . 
O 3 PC1 C 1 601 601 PC1 PC1 . 
P 2 LMT C 1 501 501 LMT LMT . 
Q 3 PC1 C 1 602 602 PC1 PC1 . 
R 3 PC1 C 1 603 603 PC1 PC1 . 
S 3 PC1 D 1 601 601 PC1 PC1 . 
T 3 PC1 D 1 602 602 PC1 PC1 . 
U 3 PC1 D 1 603 603 PC1 PC1 . 
V 2 LMT E 1 501 501 LMT LMT . 
W 2 LMT E 1 602 501 LMT LMT . 
X 3 PC1 E 1 601 601 PC1 PC1 . 
Y 3 PC1 E 1 603 602 PC1 PC1 . 
Z 3 PC1 E 1 604 603 PC1 PC1 . 
AA 4 HOH A 1 604 401 HOH HOH . 
AA 4 HOH A 2 605 402 HOH HOH . 
AA 4 HOH A 3 606 405 HOH HOH . 
AA 4 HOH A 4 607 407 HOH HOH . 
AA 4 HOH A 5 608 408 HOH HOH . 
AA 4 HOH A 6 609 409 HOH HOH . 
AA 4 HOH A 7 610 412 HOH HOH . 
AA 4 HOH A 8 611 413 HOH HOH . 
AA 4 HOH A 9 612 414 HOH HOH . 
AA 4 HOH A 10 613 415 HOH HOH . 
AA 4 HOH A 11 614 416 HOH HOH . 
AA 4 HOH A 12 615 417 HOH HOH . 
AA 4 HOH A 13 616 418 HOH HOH . 
AA 4 HOH A 14 617 419 HOH HOH . 
AA 4 HOH A 15 618 424 HOH HOH . 
AA 4 HOH A 16 619 426 HOH HOH . 
AA 4 HOH A 17 620 428 HOH HOH . 
AA 4 HOH A 18 621 430 HOH HOH . 
AA 4 HOH A 19 622 406 HOH HOH . 
AA 4 HOH A 20 623 414 HOH HOH . 
BA 4 HOH B 1 604 404 HOH HOH . 
BA 4 HOH B 2 605 406 HOH HOH . 
BA 4 HOH B 3 606 401 HOH HOH . 
BA 4 HOH B 4 607 402 HOH HOH . 
BA 4 HOH B 5 608 403 HOH HOH . 
BA 4 HOH B 6 609 404 HOH HOH . 
BA 4 HOH B 7 610 405 HOH HOH . 
BA 4 HOH B 8 611 407 HOH HOH . 
BA 4 HOH B 9 612 408 HOH HOH . 
BA 4 HOH B 10 613 409 HOH HOH . 
BA 4 HOH B 11 614 410 HOH HOH . 
BA 4 HOH B 12 615 411 HOH HOH . 
BA 4 HOH B 13 616 413 HOH HOH . 
BA 4 HOH B 14 617 414 HOH HOH . 
BA 4 HOH B 15 618 415 HOH HOH . 
BA 4 HOH B 16 619 416 HOH HOH . 
BA 4 HOH B 17 620 417 HOH HOH . 
BA 4 HOH B 18 621 418 HOH HOH . 
BA 4 HOH B 19 622 421 HOH HOH . 
BA 4 HOH B 20 623 422 HOH HOH . 
BA 4 HOH B 21 624 423 HOH HOH . 
BA 4 HOH B 22 625 425 HOH HOH . 
BA 4 HOH B 23 626 429 HOH HOH . 
BA 4 HOH B 24 627 430 HOH HOH . 
CA 4 HOH C 1 401 401 HOH HOH . 
CA 4 HOH C 2 402 402 HOH HOH . 
CA 4 HOH C 3 403 403 HOH HOH . 
CA 4 HOH C 4 405 405 HOH HOH . 
CA 4 HOH C 5 406 406 HOH HOH . 
CA 4 HOH C 6 407 407 HOH HOH . 
CA 4 HOH C 7 408 408 HOH HOH . 
CA 4 HOH C 8 409 409 HOH HOH . 
CA 4 HOH C 9 410 410 HOH HOH . 
CA 4 HOH C 10 411 411 HOH HOH . 
CA 4 HOH C 11 412 412 HOH HOH . 
CA 4 HOH C 12 413 413 HOH HOH . 
CA 4 HOH C 13 414 414 HOH HOH . 
CA 4 HOH C 14 415 415 HOH HOH . 
CA 4 HOH C 15 416 416 HOH HOH . 
CA 4 HOH C 16 417 417 HOH HOH . 
CA 4 HOH C 17 418 418 HOH HOH . 
CA 4 HOH C 18 420 420 HOH HOH . 
CA 4 HOH C 19 421 421 HOH HOH . 
CA 4 HOH C 20 428 428 HOH HOH . 
CA 4 HOH C 21 429 429 HOH HOH . 
DA 4 HOH D 1 604 403 HOH HOH . 
DA 4 HOH D 2 605 406 HOH HOH . 
DA 4 HOH D 3 606 419 HOH HOH . 
DA 4 HOH D 4 607 404 HOH HOH . 
DA 4 HOH D 5 608 401 HOH HOH . 
DA 4 HOH D 6 609 402 HOH HOH . 
DA 4 HOH D 7 610 405 HOH HOH . 
DA 4 HOH D 8 611 407 HOH HOH . 
DA 4 HOH D 9 612 408 HOH HOH . 
DA 4 HOH D 10 613 409 HOH HOH . 
DA 4 HOH D 11 614 410 HOH HOH . 
DA 4 HOH D 12 615 412 HOH HOH . 
DA 4 HOH D 13 616 413 HOH HOH . 
DA 4 HOH D 14 617 414 HOH HOH . 
DA 4 HOH D 15 618 415 HOH HOH . 
DA 4 HOH D 16 619 416 HOH HOH . 
DA 4 HOH D 17 620 417 HOH HOH . 
DA 4 HOH D 18 621 419 HOH HOH . 
DA 4 HOH D 19 622 420 HOH HOH . 
DA 4 HOH D 20 623 421 HOH HOH . 
DA 4 HOH D 21 624 425 HOH HOH . 
DA 4 HOH D 22 625 428 HOH HOH . 
DA 4 HOH D 23 626 429 HOH HOH . 
DA 4 HOH D 24 627 430 HOH HOH . 
EA 4 HOH E 1 605 421 HOH HOH . 
EA 4 HOH E 2 606 403 HOH HOH . 
EA 4 HOH E 3 607 404 HOH HOH . 
EA 4 HOH E 4 608 406 HOH HOH . 
EA 4 HOH E 5 609 401 HOH HOH . 
EA 4 HOH E 6 610 402 HOH HOH . 
EA 4 HOH E 7 611 403 HOH HOH . 
EA 4 HOH E 8 612 404 HOH HOH . 
EA 4 HOH E 9 613 405 HOH HOH . 
EA 4 HOH E 10 614 408 HOH HOH . 
EA 4 HOH E 11 615 407 HOH HOH . 
EA 4 HOH E 12 616 409 HOH HOH . 
EA 4 HOH E 13 617 411 HOH HOH . 
EA 4 HOH E 14 618 412 HOH HOH . 
EA 4 HOH E 15 619 413 HOH HOH . 
EA 4 HOH E 16 620 415 HOH HOH . 
EA 4 HOH E 17 621 416 HOH HOH . 
EA 4 HOH E 18 622 417 HOH HOH . 
EA 4 HOH E 19 623 418 HOH HOH . 
EA 4 HOH E 20 624 419 HOH HOH . 
EA 4 HOH E 21 625 420 HOH HOH . 
EA 4 HOH E 22 626 428 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O21 PC1 . . . U 3 83.553 -48.785 58.069 1 83.83 ? O21 PC1 603 D 1 
HETATM 2 C C21 PC1 . . . U 3 83.193 -47.879 56.979 1 84.64 ? C21 PC1 603 D 1 
HETATM 3 O O22 PC1 . . . U 3 84.057 -47.114 56.591 1 86.39 ? O22 PC1 603 D 1 
HETATM 4 C C22 PC1 . . . U 3 81.791 -47.879 56.357 1 81.64 ? C22 PC1 603 D 1 
HETATM 5 C C23 PC1 . . . U 3 81.631 -46.863 55.21 1 77.85 ? C23 PC1 603 D 1 
HETATM 6 C C24 PC1 . . . U 3 80.241 -46.947 54.567 1 75.63 ? C24 PC1 603 D 1 
HETATM 7 C C25 PC1 . . . U 3 80.053 -45.946 53.42 1 75.62 ? C25 PC1 603 D 1 
HETATM 8 C C26 PC1 . . . U 3 79.631 -46.609 52.095 1 73.63 ? C26 PC1 603 D 1 
HETATM 9 C C27 PC1 . . . U 3 79.01 -45.619 51.094 1 69.32 ? C27 PC1 603 D 1 
HETATM 10 C C28 PC1 . . . U 3 78.53 -46.324 49.823 1 66.9 ? C28 PC1 603 D 1 
HETATM 11 C C29 PC1 . . . U 3 77.549 -45.485 48.985 1 67.02 ? C29 PC1 603 D 1 
HETATM 12 C C2A PC1 . . . U 3 76.263 -46.266 48.628 1 67.48 ? C2A PC1 603 D 1 
HETATM 13 C C2B PC1 . . . U 3 75.818 -46.171 47.164 1 61.36 ? C2B PC1 603 D 1 
HETATM 14 C C3 PC1 . . . U 3 82.418 -49.898 61.433 1 89.01 ? C3 PC1 603 D 1 
HETATM 15 O O31 PC1 . . . U 3 81.613 -50.278 60.304 1 91 ? O31 PC1 603 D 1 
HETATM 16 C C31 PC1 . . . U 3 80.142 -50.166 60.292 1 88.94 ? C31 PC1 603 D 1 
HETATM 17 O O32 PC1 . . . U 3 79.519 -50.248 61.352 1 91.98 ? O32 PC1 603 D 1 
HETATM 18 C C32 PC1 . . . U 3 79.402 -49.982 58.971 1 82.64 ? C32 PC1 603 D 1 
HETATM 19 C C33 PC1 . . . U 3 78.026 -49.339 59.177 1 75.96 ? C33 PC1 603 D 1 
HETATM 20 C C34 PC1 . . . U 3 77.4 -48.907 57.851 1 71.08 ? C34 PC1 603 D 1 
HETATM 21 C C35 PC1 . . . U 3 76.833 -47.492 57.907 1 67.41 ? C35 PC1 603 D 1 
HETATM 22 C C36 PC1 . . . U 3 77.071 -46.735 56.604 1 63.94 ? C36 PC1 603 D 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    35 
_model_server_stats.query_time_ms           310 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           22 
#