data_3EAN # _model_server_result.job_id jH24NmFDo1jj3nglpsONRQ _model_server_result.datetime_utc '2024-11-15 18:49:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ean # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":601}' # _entry.id 3EAN # _exptl.entry_id 3EAN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.5 _cell.angle_gamma 90 _cell.entry_id 3EAN _cell.length_a 78.574 _cell.length_b 140.669 _cell.length_c 171.167 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EAN _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,G,H,I,J,S,T 1 1 C,D,K,L,M,N,U,V 2 1 E,F,O,P,Q,R,W,X 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 J N N ? 3 L N N ? 3 N N N ? 3 P N N ? 3 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 59 A CYS 59 1_555 A SG CYS 64 A CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? disulf ? disulf2 B SG CYS 59 B CYS 59 1_555 B SG CYS 64 B CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.655 ? disulf ? disulf3 C SG CYS 59 C CYS 59 1_555 C SG CYS 64 C CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? disulf ? disulf4 D SG CYS 59 D CYS 59 1_555 D SG CYS 64 D CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? disulf ? disulf5 E SG CYS 59 E CYS 59 1_555 E SG CYS 64 E CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? disulf ? disulf6 F SG CYS 59 F CYS 59 1_555 F SG CYS 64 F CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 328 n n PA O2A NAP sing 329 n n PA O5B NAP sing 330 n n PA O3 NAP sing 331 n n O2A HOA2 NAP sing 332 n n O5B C5B NAP sing 333 n n C5B C4B NAP sing 334 n n C5B H51A NAP sing 335 n n C5B H52A NAP sing 336 n n C4B O4B NAP sing 337 n n C4B C3B NAP sing 338 n n C4B H4B NAP sing 339 n n O4B C1B NAP sing 340 n n C3B O3B NAP sing 341 n n C3B C2B NAP sing 342 n n C3B H3B NAP sing 343 n n O3B HO3A NAP sing 344 n n C2B O2B NAP sing 345 n n C2B C1B NAP sing 346 n n C2B H2B NAP sing 347 n n O2B P2B NAP sing 348 n n C1B N9A NAP sing 349 n n C1B H1B NAP sing 350 n n N9A C8A NAP sing 351 n y N9A C4A NAP sing 352 n y C8A N7A NAP doub 353 n y C8A H8A NAP sing 354 n n N7A C5A NAP sing 355 n y C5A C6A NAP sing 356 n y C5A C4A NAP doub 357 n y C6A N6A NAP sing 358 n n C6A N1A NAP doub 359 n y N6A H61A NAP sing 360 n n N6A H62A NAP sing 361 n n N1A C2A NAP sing 362 n y C2A N3A NAP doub 363 n y C2A H2A NAP sing 364 n n N3A C4A NAP sing 365 n y O3 PN NAP sing 366 n n PN O1N NAP doub 367 n n PN O2N NAP sing 368 n n PN O5D NAP sing 369 n n O5D C5D NAP sing 370 n n C5D C4D NAP sing 371 n n C5D H51N NAP sing 372 n n C5D H52N NAP sing 373 n n C4D O4D NAP sing 374 n n C4D C3D NAP sing 375 n n C4D H4D NAP sing 376 n n O4D C1D NAP sing 377 n n C3D O3D NAP sing 378 n n C3D C2D NAP sing 379 n n C3D H3D NAP sing 380 n n O3D HO3N NAP sing 381 n n C2D O2D NAP sing 382 n n C2D C1D NAP sing 383 n n C2D H2D NAP sing 384 n n O2D HO2N NAP sing 385 n n C1D N1N NAP sing 386 n n C1D H1D NAP sing 387 n n N1N C2N NAP sing 388 n y N1N C6N NAP doub 389 n y C2N C3N NAP doub 390 n y C2N H2N NAP sing 391 n n C3N C7N NAP sing 392 n n C3N C4N NAP sing 393 n y C7N O7N NAP doub 394 n n C7N N7N NAP sing 395 n n N7N H71N NAP sing 396 n n N7N H72N NAP sing 397 n n C4N C5N NAP doub 398 n y C4N H4N NAP sing 399 n n C5N C6N NAP sing 400 n y C5N H5N NAP sing 401 n n C6N H6N NAP sing 402 n n P2B O1X NAP doub 403 n n P2B O2X NAP sing 404 n n P2B O3X NAP sing 405 n n O2X HOP2 NAP sing 406 n n O3X HOP3 NAP sing 407 n n # _atom_sites.entry_id 3EAN _atom_sites.fract_transf_matrix[1][1] 0.012727 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007109 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00586 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 FAD A 1 600 600 FAD FAD . H 3 NAP A 1 601 601 NAP NAP . I 2 FAD B 1 600 600 FAD FAD . J 3 NAP B 1 601 601 NAP NAP . K 2 FAD C 1 600 600 FAD FAD . L 3 NAP C 1 601 601 NAP NAP . M 2 FAD D 1 600 600 FAD FAD . N 3 NAP D 1 601 601 NAP NAP . O 2 FAD E 1 600 600 FAD FAD . P 3 NAP E 1 601 601 NAP NAP . Q 2 FAD F 1 600 600 FAD FAD . R 3 NAP F 1 601 601 NAP NAP . S 4 HOH A 1 602 5 HOH HOH . S 4 HOH A 2 603 6 HOH HOH . S 4 HOH A 3 604 7 HOH HOH . S 4 HOH A 4 605 8 HOH HOH . S 4 HOH A 5 606 12 HOH HOH . S 4 HOH A 6 607 26 HOH HOH . S 4 HOH A 7 608 47 HOH HOH . S 4 HOH A 8 609 52 HOH HOH . S 4 HOH A 9 610 57 HOH HOH . S 4 HOH A 10 611 61 HOH HOH . S 4 HOH A 11 612 64 HOH HOH . S 4 HOH A 12 613 65 HOH HOH . S 4 HOH A 13 614 70 HOH HOH . S 4 HOH A 14 615 83 HOH HOH . S 4 HOH A 15 616 87 HOH HOH . S 4 HOH A 16 617 89 HOH HOH . S 4 HOH A 17 618 91 HOH HOH . S 4 HOH A 18 619 93 HOH HOH . S 4 HOH A 19 620 102 HOH HOH . S 4 HOH A 20 621 103 HOH HOH . S 4 HOH A 21 622 117 HOH HOH . S 4 HOH A 22 623 119 HOH HOH . S 4 HOH A 23 624 133 HOH HOH . T 4 HOH B 1 602 10 HOH HOH . T 4 HOH B 2 603 14 HOH HOH . T 4 HOH B 3 604 16 HOH HOH . T 4 HOH B 4 605 18 HOH HOH . T 4 HOH B 5 606 19 HOH HOH . T 4 HOH B 6 607 21 HOH HOH . T 4 HOH B 7 608 24 HOH HOH . T 4 HOH B 8 609 25 HOH HOH . T 4 HOH B 9 610 41 HOH HOH . T 4 HOH B 10 611 58 HOH HOH . T 4 HOH B 11 612 74 HOH HOH . T 4 HOH B 12 613 94 HOH HOH . T 4 HOH B 13 614 98 HOH HOH . T 4 HOH B 14 615 111 HOH HOH . T 4 HOH B 15 616 113 HOH HOH . T 4 HOH B 16 617 116 HOH HOH . T 4 HOH B 17 618 122 HOH HOH . T 4 HOH B 18 619 123 HOH HOH . T 4 HOH B 19 620 130 HOH HOH . T 4 HOH B 20 621 135 HOH HOH . U 4 HOH C 1 602 4 HOH HOH . U 4 HOH C 2 603 9 HOH HOH . U 4 HOH C 3 604 28 HOH HOH . U 4 HOH C 4 605 32 HOH HOH . U 4 HOH C 5 606 51 HOH HOH . U 4 HOH C 6 607 54 HOH HOH . U 4 HOH C 7 608 60 HOH HOH . U 4 HOH C 8 609 82 HOH HOH . U 4 HOH C 9 610 86 HOH HOH . U 4 HOH C 10 611 88 HOH HOH . U 4 HOH C 11 612 105 HOH HOH . U 4 HOH C 12 613 114 HOH HOH . U 4 HOH C 13 614 115 HOH HOH . U 4 HOH C 14 615 120 HOH HOH . V 4 HOH D 1 602 2 HOH HOH . V 4 HOH D 2 603 11 HOH HOH . V 4 HOH D 3 604 15 HOH HOH . V 4 HOH D 4 605 17 HOH HOH . V 4 HOH D 5 606 20 HOH HOH . V 4 HOH D 6 607 33 HOH HOH . V 4 HOH D 7 608 34 HOH HOH . V 4 HOH D 8 609 38 HOH HOH . V 4 HOH D 9 610 45 HOH HOH . V 4 HOH D 10 611 46 HOH HOH . V 4 HOH D 11 612 55 HOH HOH . V 4 HOH D 12 613 63 HOH HOH . V 4 HOH D 13 614 68 HOH HOH . V 4 HOH D 14 615 69 HOH HOH . V 4 HOH D 15 616 71 HOH HOH . V 4 HOH D 16 617 73 HOH HOH . V 4 HOH D 17 618 75 HOH HOH . V 4 HOH D 18 619 76 HOH HOH . V 4 HOH D 19 620 79 HOH HOH . V 4 HOH D 20 621 81 HOH HOH . V 4 HOH D 21 622 90 HOH HOH . V 4 HOH D 22 623 95 HOH HOH . V 4 HOH D 23 624 96 HOH HOH . V 4 HOH D 24 625 97 HOH HOH . V 4 HOH D 25 626 99 HOH HOH . V 4 HOH D 26 627 106 HOH HOH . V 4 HOH D 27 628 108 HOH HOH . V 4 HOH D 28 629 109 HOH HOH . V 4 HOH D 29 630 110 HOH HOH . V 4 HOH D 30 631 112 HOH HOH . V 4 HOH D 31 632 126 HOH HOH . V 4 HOH D 32 633 131 HOH HOH . V 4 HOH D 33 634 132 HOH HOH . V 4 HOH D 34 635 136 HOH HOH . V 4 HOH D 35 636 138 HOH HOH . W 4 HOH E 1 602 3 HOH HOH . W 4 HOH E 2 603 13 HOH HOH . W 4 HOH E 3 604 22 HOH HOH . W 4 HOH E 4 605 35 HOH HOH . W 4 HOH E 5 606 42 HOH HOH . W 4 HOH E 6 607 44 HOH HOH . W 4 HOH E 7 608 48 HOH HOH . W 4 HOH E 8 609 49 HOH HOH . W 4 HOH E 9 610 50 HOH HOH . W 4 HOH E 10 611 53 HOH HOH . W 4 HOH E 11 612 56 HOH HOH . W 4 HOH E 12 613 59 HOH HOH . W 4 HOH E 13 614 66 HOH HOH . W 4 HOH E 14 615 72 HOH HOH . W 4 HOH E 15 616 77 HOH HOH . W 4 HOH E 16 617 78 HOH HOH . W 4 HOH E 17 618 80 HOH HOH . W 4 HOH E 18 619 85 HOH HOH . W 4 HOH E 19 620 101 HOH HOH . W 4 HOH E 20 621 104 HOH HOH . W 4 HOH E 21 622 118 HOH HOH . W 4 HOH E 22 623 121 HOH HOH . W 4 HOH E 23 624 124 HOH HOH . W 4 HOH E 24 625 128 HOH HOH . W 4 HOH E 25 626 129 HOH HOH . W 4 HOH E 26 627 134 HOH HOH . X 4 HOH F 1 602 30 HOH HOH . X 4 HOH F 2 603 31 HOH HOH . X 4 HOH F 3 604 37 HOH HOH . X 4 HOH F 4 605 39 HOH HOH . X 4 HOH F 5 606 43 HOH HOH . X 4 HOH F 6 607 62 HOH HOH . X 4 HOH F 7 608 84 HOH HOH . X 4 HOH F 8 609 92 HOH HOH . X 4 HOH F 9 610 100 HOH HOH . X 4 HOH F 10 611 107 HOH HOH . X 4 HOH F 11 612 125 HOH HOH . X 4 HOH F 12 613 127 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . J 3 -15.369 -4.889 138.759 1 94.18 ? PA NAP 601 B 1 HETATM 2 O O1A NAP . . . J 3 -16.616 -4.558 139.546 1 93.2 ? O1A NAP 601 B 1 HETATM 3 O O2A NAP . . . J 3 -14.385 -3.846 138.379 1 93.28 ? O2A NAP 601 B 1 HETATM 4 O O5B NAP . . . J 3 -15.998 -5.552 137.42 1 89.3 ? O5B NAP 601 B 1 HETATM 5 C C5B NAP . . . J 3 -16.339 -6.927 137.367 1 81.86 ? C5B NAP 601 B 1 HETATM 6 C C4B NAP . . . J 3 -15.612 -7.616 136.229 1 76.78 ? C4B NAP 601 B 1 HETATM 7 O O4B NAP . . . J 3 -16.082 -8.964 136.308 1 76.08 ? O4B NAP 601 B 1 HETATM 8 C C3B NAP . . . J 3 -16.038 -7.153 134.845 1 74.99 ? C3B NAP 601 B 1 HETATM 9 O O3B NAP . . . J 3 -15.134 -7.643 133.845 1 73.47 ? O3B NAP 601 B 1 HETATM 10 C C2B NAP . . . J 3 -17.375 -7.853 134.725 1 73.03 ? C2B NAP 601 B 1 HETATM 11 O O2B NAP . . . J 3 -17.784 -7.938 133.357 1 69.49 ? O2B NAP 601 B 1 HETATM 12 C C1B NAP . . . J 3 -17.01 -9.222 135.242 1 74.22 ? C1B NAP 601 B 1 HETATM 13 N N9A NAP . . . J 3 -18.171 -9.878 135.83 1 74.59 ? N9A NAP 601 B 1 HETATM 14 C C8A NAP . . . J 3 -19.012 -9.357 136.734 1 74.25 ? C8A NAP 601 B 1 HETATM 15 N N7A NAP . . . J 3 -19.937 -10.273 137.02 1 74.37 ? N7A NAP 601 B 1 HETATM 16 C C5A NAP . . . J 3 -19.665 -11.359 136.302 1 74.03 ? C5A NAP 601 B 1 HETATM 17 C C6A NAP . . . J 3 -20.257 -12.602 136.18 1 74.01 ? C6A NAP 601 B 1 HETATM 18 N N6A NAP . . . J 3 -21.327 -12.86 136.902 1 74.46 ? N6A NAP 601 B 1 HETATM 19 N N1A NAP . . . J 3 -19.736 -13.54 135.347 1 74.43 ? N1A NAP 601 B 1 HETATM 20 C C2A NAP . . . J 3 -18.636 -13.275 134.63 1 74.14 ? C2A NAP 601 B 1 HETATM 21 N N3A NAP . . . J 3 -18.049 -12.078 134.727 1 74.16 ? N3A NAP 601 B 1 HETATM 22 C C4A NAP . . . J 3 -18.539 -11.117 135.547 1 74.43 ? C4A NAP 601 B 1 HETATM 23 O O3 NAP . . . J 3 -14.396 -6.084 139.431 1 98.11 ? O3 NAP 601 B 1 HETATM 24 P PN NAP . . . J 3 -12.815 -6.022 140.164 1 100.58 ? PN NAP 601 B 1 HETATM 25 O O1N NAP . . . J 3 -11.842 -5.814 139.023 1 99.9 ? O1N NAP 601 B 1 HETATM 26 O O2N NAP . . . J 3 -12.707 -7.266 141.01 1 97.27 ? O2N NAP 601 B 1 HETATM 27 O O5D NAP . . . J 3 -12.852 -4.594 141.053 1 99.76 ? O5D NAP 601 B 1 HETATM 28 C C5D NAP . . . J 3 -12.144 -4.332 142.28 1 98.25 ? C5D NAP 601 B 1 HETATM 29 P P2B NAP . . . J 3 -18.944 -6.986 132.817 1 64.57 ? P2B NAP 601 B 1 HETATM 30 O O1X NAP . . . J 3 -18.208 -5.751 132.068 1 64.82 ? O1X NAP 601 B 1 HETATM 31 O O2X NAP . . . J 3 -19.58 -7.895 131.708 1 64.82 ? O2X NAP 601 B 1 HETATM 32 O O3X NAP . . . J 3 -19.825 -6.491 133.88 1 65.72 ? O3X NAP 601 B 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 95 _model_server_stats.query_time_ms 692 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 32 #