data_3EAO # _model_server_result.job_id eZDae_I5jKug33z4WpKYKA _model_server_result.datetime_utc '2024-11-13 15:06:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3eao # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":600}' # _entry.id 3EAO # _exptl.entry_id 3EAO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94 _cell.angle_gamma 90 _cell.entry_id 3EAO _cell.length_a 78.231 _cell.length_b 137.754 _cell.length_c 168.954 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EAO _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,G,H,I,J,S,T 1 1 C,D,K,L,M,N,U,V 2 1 E,F,O,P,Q,R,W,X 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 I N N ? 2 K N N ? 2 M N N ? 2 O N N ? 2 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 59 A CYS 59 1_555 A SG CYS 64 A CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf2 B SG CYS 59 B CYS 59 1_555 B SG CYS 64 B CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? disulf ? disulf3 C SG CYS 59 C CYS 59 1_555 C SG CYS 64 C CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf4 D SG CYS 59 D CYS 59 1_555 D SG CYS 64 D CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf5 E SG CYS 59 E CYS 59 1_555 E SG CYS 64 E CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 F SG CYS 59 F CYS 59 1_555 F SG CYS 64 F CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? covale ? covale1 A SG CYS 497 A CYS 497 1_555 A SE SEC 498 A SEC 498 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? covale ? covale2 D SG CYS 497 D CYS 497 1_555 D SE SEC 498 D SEC 498 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? covale ? covale3 E SG CYS 497 E CYS 497 1_555 E SE SEC 498 E SEC 498 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? covale ? covale4 F SG CYS 497 F CYS 497 1_555 F SE SEC 498 F SEC 498 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 3EAO _atom_sites.fract_transf_matrix[1][1] 0.012783 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000894 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007259 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005933 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 FAD A 1 600 600 FAD FAD . H 3 NAP A 1 601 601 NAP NAP . I 2 FAD B 1 600 600 FAD FAD . J 3 NAP B 1 601 601 NAP NAP . K 2 FAD C 1 600 600 FAD FAD . L 3 NAP C 1 601 601 NAP NAP . M 2 FAD D 1 600 600 FAD FAD . N 3 NAP D 1 601 601 NAP NAP . O 2 FAD E 1 600 600 FAD FAD . P 3 NAP E 1 601 601 NAP NAP . Q 2 FAD F 1 600 600 FAD FAD . R 3 NAP F 1 601 601 NAP NAP . S 4 HOH A 1 602 602 HOH HOH . S 4 HOH A 2 603 603 HOH HOH . S 4 HOH A 3 604 604 HOH HOH . T 4 HOH B 1 602 602 HOH HOH . T 4 HOH B 2 603 603 HOH HOH . T 4 HOH B 3 604 604 HOH HOH . T 4 HOH B 4 605 605 HOH HOH . T 4 HOH B 5 606 606 HOH HOH . T 4 HOH B 6 607 607 HOH HOH . T 4 HOH B 7 608 608 HOH HOH . T 4 HOH B 8 609 609 HOH HOH . U 4 HOH C 1 602 602 HOH HOH . U 4 HOH C 2 603 603 HOH HOH . U 4 HOH C 3 604 604 HOH HOH . U 4 HOH C 4 605 605 HOH HOH . U 4 HOH C 5 606 606 HOH HOH . V 4 HOH D 1 602 602 HOH HOH . V 4 HOH D 2 603 603 HOH HOH . V 4 HOH D 3 604 604 HOH HOH . V 4 HOH D 4 605 605 HOH HOH . V 4 HOH D 5 606 606 HOH HOH . V 4 HOH D 6 607 607 HOH HOH . V 4 HOH D 7 608 608 HOH HOH . V 4 HOH D 8 609 609 HOH HOH . V 4 HOH D 9 610 610 HOH HOH . V 4 HOH D 10 611 611 HOH HOH . V 4 HOH D 11 612 612 HOH HOH . W 4 HOH E 1 602 602 HOH HOH . W 4 HOH E 2 603 603 HOH HOH . W 4 HOH E 3 604 604 HOH HOH . W 4 HOH E 4 605 605 HOH HOH . X 4 HOH F 1 602 602 HOH HOH . X 4 HOH F 2 603 603 HOH HOH . X 4 HOH F 3 604 604 HOH HOH . X 4 HOH F 4 605 605 HOH HOH . X 4 HOH F 5 606 606 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . O 2 28.886 16.964 39.557 1 55.84 ? PA FAD 600 E 1 HETATM 2 O O1A FAD . . . O 2 28.347 15.628 39.294 1 57.35 ? O1A FAD 600 E 1 HETATM 3 O O2A FAD . . . O 2 28.176 18.069 38.957 1 56.39 ? O2A FAD 600 E 1 HETATM 4 O O5B FAD . . . O 2 28.966 17.169 41.143 1 57.88 ? O5B FAD 600 E 1 HETATM 5 C C5B FAD . . . O 2 28.865 18.43 41.833 1 58.72 ? C5B FAD 600 E 1 HETATM 6 C C4B FAD . . . O 2 27.773 18.403 42.91 1 59.09 ? C4B FAD 600 E 1 HETATM 7 O O4B FAD . . . O 2 28.182 19.272 43.979 1 59.71 ? O4B FAD 600 E 1 HETATM 8 C C3B FAD . . . O 2 26.433 18.937 42.399 1 59.7 ? C3B FAD 600 E 1 HETATM 9 O O3B FAD . . . O 2 25.34 18.269 43.054 1 59.71 ? O3B FAD 600 E 1 HETATM 10 C C2B FAD . . . O 2 26.508 20.413 42.789 1 60.57 ? C2B FAD 600 E 1 HETATM 11 O O2B FAD . . . O 2 25.22 20.973 42.989 1 61.92 ? O2B FAD 600 E 1 HETATM 12 C C1B FAD . . . O 2 27.18 20.35 44.14 1 61.08 ? C1B FAD 600 E 1 HETATM 13 N N9A FAD . . . O 2 27.843 21.646 44.599 1 61.36 ? N9A FAD 600 E 1 HETATM 14 C C8A FAD . . . O 2 28.309 22.661 43.856 1 61.39 ? C8A FAD 600 E 1 HETATM 15 N N7A FAD . . . O 2 28.832 23.601 44.64 1 61.45 ? N7A FAD 600 E 1 HETATM 16 C C5A FAD . . . O 2 28.695 23.176 45.891 1 61.76 ? C5A FAD 600 E 1 HETATM 17 C C6A FAD . . . O 2 29.033 23.693 47.131 1 61.54 ? C6A FAD 600 E 1 HETATM 18 N N6A FAD . . . O 2 29.636 24.865 47.227 1 61.21 ? N6A FAD 600 E 1 HETATM 19 N N1A FAD . . . O 2 28.753 23.002 48.238 1 61.29 ? N1A FAD 600 E 1 HETATM 20 C C2A FAD . . . O 2 28.149 21.834 48.168 1 61.06 ? C2A FAD 600 E 1 HETATM 21 N N3A FAD . . . O 2 27.809 21.306 47.006 1 60.86 ? N3A FAD 600 E 1 HETATM 22 C C4A FAD . . . O 2 28.072 21.947 45.864 1 61.36 ? C4A FAD 600 E 1 HETATM 23 N N1 FAD . . . O 2 29.154 12.221 31.208 1 56.77 ? N1 FAD 600 E 1 HETATM 24 C C2 FAD . . . O 2 29.368 10.91 30.722 1 57.45 ? C2 FAD 600 E 1 HETATM 25 O O2 FAD . . . O 2 30.39 10.276 31.017 1 57.46 ? O2 FAD 600 E 1 HETATM 26 N N3 FAD . . . O 2 28.416 10.317 29.893 1 57.2 ? N3 FAD 600 E 1 HETATM 27 C C4 FAD . . . O 2 27.29 11.021 29.546 1 56.91 ? C4 FAD 600 E 1 HETATM 28 O O4 FAD . . . O 2 26.487 10.484 28.803 1 56.42 ? O4 FAD 600 E 1 HETATM 29 C C4X FAD . . . O 2 27.071 12.314 30.019 1 57.57 ? C4X FAD 600 E 1 HETATM 30 N N5 FAD . . . O 2 25.906 13.021 29.66 1 57.71 ? N5 FAD 600 E 1 HETATM 31 C C5X FAD . . . O 2 25.615 14.276 30.19 1 57.46 ? C5X FAD 600 E 1 HETATM 32 C C6 FAD . . . O 2 24.418 14.892 29.869 1 57.8 ? C6 FAD 600 E 1 HETATM 33 C C7 FAD . . . O 2 24.11 16.147 30.388 1 57.25 ? C7 FAD 600 E 1 HETATM 34 C C7M FAD . . . O 2 22.785 16.82 30.026 1 56.86 ? C7M FAD 600 E 1 HETATM 35 C C8 FAD . . . O 2 25.016 16.775 31.228 1 57.33 ? C8 FAD 600 E 1 HETATM 36 C C8M FAD . . . O 2 24.716 18.146 31.797 1 57.66 ? C8M FAD 600 E 1 HETATM 37 C C9 FAD . . . O 2 26.214 16.158 31.546 1 57.38 ? C9 FAD 600 E 1 HETATM 38 C C9A FAD . . . O 2 26.519 14.899 31.035 1 57.44 ? C9A FAD 600 E 1 HETATM 39 N N10 FAD . . . O 2 27.747 14.255 31.333 1 57.36 ? N10 FAD 600 E 1 HETATM 40 C C10 FAD . . . O 2 27.993 12.929 30.862 1 57.26 ? C10 FAD 600 E 1 HETATM 41 C C1' FAD . . . O 2 28.79 14.978 32.095 1 56.29 ? C1' FAD 600 E 1 HETATM 42 C C2' FAD . . . O 2 28.695 14.557 33.549 1 55.54 ? C2' FAD 600 E 1 HETATM 43 O O2' FAD . . . O 2 27.444 15.017 34.081 1 54.91 ? O2' FAD 600 E 1 HETATM 44 C C3' FAD . . . O 2 29.89 15.087 34.337 1 55.43 ? C3' FAD 600 E 1 HETATM 45 O O3' FAD . . . O 2 31.085 14.721 33.67 1 55.67 ? O3' FAD 600 E 1 HETATM 46 C C4' FAD . . . O 2 29.918 14.573 35.779 1 55.63 ? C4' FAD 600 E 1 HETATM 47 O O4' FAD . . . O 2 28.602 14.588 36.338 1 55.4 ? O4' FAD 600 E 1 HETATM 48 C C5' FAD . . . O 2 30.828 15.446 36.636 1 55.82 ? C5' FAD 600 E 1 HETATM 49 O O5' FAD . . . O 2 30.896 15.036 37.982 1 55.81 ? O5' FAD 600 E 1 HETATM 50 P P FAD . . . O 2 31.516 16.015 39.037 1 54.62 ? P FAD 600 E 1 HETATM 51 O O1P FAD . . . O 2 31.591 15.349 40.359 1 54.95 ? O1P FAD 600 E 1 HETATM 52 O O2P FAD . . . O 2 32.732 16.578 38.482 1 55.39 ? O2P FAD 600 E 1 HETATM 53 O O3P FAD . . . O 2 30.429 17.149 39.119 1 55.53 ? O3P FAD 600 E 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 75 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 53 #