data_3EAO # _model_server_result.job_id OE50w0DHpH-_00KMpJYNkA _model_server_result.datetime_utc '2024-11-24 14:03:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3eao # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":600}' # _entry.id 3EAO # _exptl.entry_id 3EAO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94 _cell.angle_gamma 90 _cell.entry_id 3EAO _cell.length_a 78.231 _cell.length_b 137.754 _cell.length_c 168.954 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EAO _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,G,H,I,J,S,T 1 1 C,D,K,L,M,N,U,V 2 1 E,F,O,P,Q,R,W,X 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 I N N ? 2 K N N ? 2 M N N ? 2 O N N ? 2 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 59 A CYS 59 1_555 A SG CYS 64 A CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf2 B SG CYS 59 B CYS 59 1_555 B SG CYS 64 B CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? disulf ? disulf3 C SG CYS 59 C CYS 59 1_555 C SG CYS 64 C CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf4 D SG CYS 59 D CYS 59 1_555 D SG CYS 64 D CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf5 E SG CYS 59 E CYS 59 1_555 E SG CYS 64 E CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 F SG CYS 59 F CYS 59 1_555 F SG CYS 64 F CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? covale ? covale1 A SG CYS 497 A CYS 497 1_555 A SE SEC 498 A SEC 498 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? covale ? covale2 D SG CYS 497 D CYS 497 1_555 D SE SEC 498 D SEC 498 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? covale ? covale3 E SG CYS 497 E CYS 497 1_555 E SE SEC 498 E SEC 498 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? covale ? covale4 F SG CYS 497 F CYS 497 1_555 F SE SEC 498 F SEC 498 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 3EAO _atom_sites.fract_transf_matrix[1][1] 0.012783 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000894 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007259 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005933 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 FAD A 1 600 600 FAD FAD . H 3 NAP A 1 601 601 NAP NAP . I 2 FAD B 1 600 600 FAD FAD . J 3 NAP B 1 601 601 NAP NAP . K 2 FAD C 1 600 600 FAD FAD . L 3 NAP C 1 601 601 NAP NAP . M 2 FAD D 1 600 600 FAD FAD . N 3 NAP D 1 601 601 NAP NAP . O 2 FAD E 1 600 600 FAD FAD . P 3 NAP E 1 601 601 NAP NAP . Q 2 FAD F 1 600 600 FAD FAD . R 3 NAP F 1 601 601 NAP NAP . S 4 HOH A 1 602 602 HOH HOH . S 4 HOH A 2 603 603 HOH HOH . S 4 HOH A 3 604 604 HOH HOH . T 4 HOH B 1 602 602 HOH HOH . T 4 HOH B 2 603 603 HOH HOH . T 4 HOH B 3 604 604 HOH HOH . T 4 HOH B 4 605 605 HOH HOH . T 4 HOH B 5 606 606 HOH HOH . T 4 HOH B 6 607 607 HOH HOH . T 4 HOH B 7 608 608 HOH HOH . T 4 HOH B 8 609 609 HOH HOH . U 4 HOH C 1 602 602 HOH HOH . U 4 HOH C 2 603 603 HOH HOH . U 4 HOH C 3 604 604 HOH HOH . U 4 HOH C 4 605 605 HOH HOH . U 4 HOH C 5 606 606 HOH HOH . V 4 HOH D 1 602 602 HOH HOH . V 4 HOH D 2 603 603 HOH HOH . V 4 HOH D 3 604 604 HOH HOH . V 4 HOH D 4 605 605 HOH HOH . V 4 HOH D 5 606 606 HOH HOH . V 4 HOH D 6 607 607 HOH HOH . V 4 HOH D 7 608 608 HOH HOH . V 4 HOH D 8 609 609 HOH HOH . V 4 HOH D 9 610 610 HOH HOH . V 4 HOH D 10 611 611 HOH HOH . V 4 HOH D 11 612 612 HOH HOH . W 4 HOH E 1 602 602 HOH HOH . W 4 HOH E 2 603 603 HOH HOH . W 4 HOH E 3 604 604 HOH HOH . W 4 HOH E 4 605 605 HOH HOH . X 4 HOH F 1 602 602 HOH HOH . X 4 HOH F 2 603 603 HOH HOH . X 4 HOH F 3 604 604 HOH HOH . X 4 HOH F 4 605 605 HOH HOH . X 4 HOH F 5 606 606 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . Q 2 29.57 -22.495 3.954 1 56.99 ? PA FAD 600 F 1 HETATM 2 O O1A FAD . . . Q 2 29.2 -21.036 4.112 1 57.56 ? O1A FAD 600 F 1 HETATM 3 O O2A FAD . . . Q 2 28.678 -23.615 4.46 1 56.45 ? O2A FAD 600 F 1 HETATM 4 O O5B FAD . . . Q 2 29.925 -22.615 2.323 1 58.21 ? O5B FAD 600 F 1 HETATM 5 C C5B FAD . . . Q 2 29.805 -23.876 1.573 1 59.02 ? C5B FAD 600 F 1 HETATM 6 C C4B FAD . . . Q 2 28.878 -23.722 0.354 1 59.25 ? C4B FAD 600 F 1 HETATM 7 O O4B FAD . . . Q 2 29.338 -24.61 -0.656 1 59.57 ? O4B FAD 600 F 1 HETATM 8 C C3B FAD . . . Q 2 27.43 -24.14 0.693 1 59.94 ? C3B FAD 600 F 1 HETATM 9 O O3B FAD . . . Q 2 26.534 -23.379 -0.156 1 60.11 ? O3B FAD 600 F 1 HETATM 10 C C2B FAD . . . Q 2 27.378 -25.624 0.35 1 60.64 ? C2B FAD 600 F 1 HETATM 11 O O2B FAD . . . Q 2 26.042 -26.056 0.041 1 61.92 ? O2B FAD 600 F 1 HETATM 12 C C1B FAD . . . Q 2 28.225 -25.598 -0.93 1 61.23 ? C1B FAD 600 F 1 HETATM 13 N N9A FAD . . . Q 2 28.79 -26.956 -1.362 1 61.69 ? N9A FAD 600 F 1 HETATM 14 C C8A FAD . . . Q 2 28.954 -28.065 -0.591 1 61.62 ? C8A FAD 600 F 1 HETATM 15 N N7A FAD . . . Q 2 29.498 -29.042 -1.323 1 61.87 ? N7A FAD 600 F 1 HETATM 16 C C5A FAD . . . Q 2 29.685 -28.542 -2.576 1 62.17 ? C5A FAD 600 F 1 HETATM 17 C C6A FAD . . . Q 2 30.205 -29.06 -3.78 1 61.93 ? C6A FAD 600 F 1 HETATM 18 N N6A FAD . . . Q 2 30.671 -30.328 -3.846 1 61.31 ? N6A FAD 600 F 1 HETATM 19 N N1A FAD . . . Q 2 30.225 -28.243 -4.879 1 61.83 ? N1A FAD 600 F 1 HETATM 20 C C2A FAD . . . Q 2 29.779 -26.982 -4.875 1 61.2 ? C2A FAD 600 F 1 HETATM 21 N N3A FAD . . . Q 2 29.287 -26.46 -3.762 1 60.98 ? N3A FAD 600 F 1 HETATM 22 C C4A FAD . . . Q 2 29.233 -27.21 -2.61 1 61.7 ? C4A FAD 600 F 1 HETATM 23 N N1 FAD . . . Q 2 29.113 -17.886 12.247 1 56.73 ? N1 FAD 600 F 1 HETATM 24 C C2 FAD . . . Q 2 29.398 -16.595 12.79 1 57.44 ? C2 FAD 600 F 1 HETATM 25 O O2 FAD . . . Q 2 30.487 -16.034 12.638 1 57.17 ? O2 FAD 600 F 1 HETATM 26 N N3 FAD . . . Q 2 28.399 -15.936 13.531 1 57.53 ? N3 FAD 600 F 1 HETATM 27 C C4 FAD . . . Q 2 27.125 -16.542 13.749 1 57.29 ? C4 FAD 600 F 1 HETATM 28 O O4 FAD . . . Q 2 26.249 -15.95 14.397 1 56.73 ? O4 FAD 600 F 1 HETATM 29 C C4X FAD . . . Q 2 26.85 -17.805 13.213 1 57.62 ? C4X FAD 600 F 1 HETATM 30 N N5 FAD . . . Q 2 25.573 -18.378 13.427 1 57.86 ? N5 FAD 600 F 1 HETATM 31 C C5X FAD . . . Q 2 25.214 -19.584 12.821 1 57.84 ? C5X FAD 600 F 1 HETATM 32 C C6 FAD . . . Q 2 23.909 -20.066 12.979 1 58 ? C6 FAD 600 F 1 HETATM 33 C C7 FAD . . . Q 2 23.564 -21.276 12.373 1 57.47 ? C7 FAD 600 F 1 HETATM 34 C C7M FAD . . . Q 2 22.133 -21.793 12.548 1 57.09 ? C7M FAD 600 F 1 HETATM 35 C C8 FAD . . . Q 2 24.517 -21.99 11.622 1 57.57 ? C8 FAD 600 F 1 HETATM 36 C C8M FAD . . . Q 2 24.139 -23.316 10.96 1 57.88 ? C8M FAD 600 F 1 HETATM 37 C C9 FAD . . . Q 2 25.82 -21.511 11.476 1 57.47 ? C9 FAD 600 F 1 HETATM 38 C C9A FAD . . . Q 2 26.174 -20.292 12.073 1 57.65 ? C9A FAD 600 F 1 HETATM 39 N N10 FAD . . . Q 2 27.497 -19.762 11.95 1 57.44 ? N10 FAD 600 F 1 HETATM 40 C C10 FAD . . . Q 2 27.824 -18.477 12.459 1 57.23 ? C10 FAD 600 F 1 HETATM 41 C C1' FAD . . . Q 2 28.548 -20.583 11.318 1 56.42 ? C1' FAD 600 F 1 HETATM 42 C C2' FAD . . . Q 2 28.651 -20.196 9.855 1 55.73 ? C2' FAD 600 F 1 HETATM 43 O O2' FAD . . . Q 2 27.511 -20.739 9.169 1 55.1 ? O2' FAD 600 F 1 HETATM 44 C C3' FAD . . . Q 2 29.946 -20.741 9.244 1 55.83 ? C3' FAD 600 F 1 HETATM 45 O O3' FAD . . . Q 2 31.074 -20.405 10.09 1 56.2 ? O3' FAD 600 F 1 HETATM 46 C C4' FAD . . . Q 2 30.205 -20.217 7.804 1 56.04 ? C4' FAD 600 F 1 HETATM 47 O O4' FAD . . . Q 2 28.991 -19.992 7.045 1 55.68 ? O4' FAD 600 F 1 HETATM 48 C C5' FAD . . . Q 2 31.094 -21.2 7.039 1 56.14 ? C5' FAD 600 F 1 HETATM 49 O O5' FAD . . . Q 2 31.472 -20.638 5.719 1 56.57 ? O5' FAD 600 F 1 HETATM 50 P P FAD . . . Q 2 32.264 -21.645 4.672 1 56.16 ? P FAD 600 F 1 HETATM 51 O O1P FAD . . . Q 2 32.606 -20.968 3.381 1 54.7 ? O1P FAD 600 F 1 HETATM 52 O O2P FAD . . . Q 2 33.324 -22.311 5.509 1 55.89 ? O2P FAD 600 F 1 HETATM 53 O O3P FAD . . . Q 2 31.04 -22.814 4.557 1 56.06 ? O3P FAD 600 F 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 347 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 53 #