data_3EAO # _model_server_result.job_id nrINhTNBNPMl9-eJJXtTjA _model_server_result.datetime_utc '2024-11-13 14:53:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3eao # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":601}' # _entry.id 3EAO # _exptl.entry_id 3EAO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94 _cell.angle_gamma 90 _cell.entry_id 3EAO _cell.length_a 78.231 _cell.length_b 137.754 _cell.length_c 168.954 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EAO _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,G,H,I,J,S,T 1 1 C,D,K,L,M,N,U,V 2 1 E,F,O,P,Q,R,W,X 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 J N N ? 3 L N N ? 3 N N N ? 3 P N N ? 3 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 59 A CYS 59 1_555 A SG CYS 64 A CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf2 B SG CYS 59 B CYS 59 1_555 B SG CYS 64 B CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? disulf ? disulf3 C SG CYS 59 C CYS 59 1_555 C SG CYS 64 C CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf4 D SG CYS 59 D CYS 59 1_555 D SG CYS 64 D CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf5 E SG CYS 59 E CYS 59 1_555 E SG CYS 64 E CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 F SG CYS 59 F CYS 59 1_555 F SG CYS 64 F CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? covale ? covale1 A SG CYS 497 A CYS 497 1_555 A SE SEC 498 A SEC 498 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? covale ? covale2 D SG CYS 497 D CYS 497 1_555 D SE SEC 498 D SEC 498 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? covale ? covale3 E SG CYS 497 E CYS 497 1_555 E SE SEC 498 E SEC 498 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? covale ? covale4 F SG CYS 497 F CYS 497 1_555 F SE SEC 498 F SEC 498 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 328 n n PA O2A NAP sing 329 n n PA O5B NAP sing 330 n n PA O3 NAP sing 331 n n O2A HOA2 NAP sing 332 n n O5B C5B NAP sing 333 n n C5B C4B NAP sing 334 n n C5B H51A NAP sing 335 n n C5B H52A NAP sing 336 n n C4B O4B NAP sing 337 n n C4B C3B NAP sing 338 n n C4B H4B NAP sing 339 n n O4B C1B NAP sing 340 n n C3B O3B NAP sing 341 n n C3B C2B NAP sing 342 n n C3B H3B NAP sing 343 n n O3B HO3A NAP sing 344 n n C2B O2B NAP sing 345 n n C2B C1B NAP sing 346 n n C2B H2B NAP sing 347 n n O2B P2B NAP sing 348 n n C1B N9A NAP sing 349 n n C1B H1B NAP sing 350 n n N9A C8A NAP sing 351 n y N9A C4A NAP sing 352 n y C8A N7A NAP doub 353 n y C8A H8A NAP sing 354 n n N7A C5A NAP sing 355 n y C5A C6A NAP sing 356 n y C5A C4A NAP doub 357 n y C6A N6A NAP sing 358 n n C6A N1A NAP doub 359 n y N6A H61A NAP sing 360 n n N6A H62A NAP sing 361 n n N1A C2A NAP sing 362 n y C2A N3A NAP doub 363 n y C2A H2A NAP sing 364 n n N3A C4A NAP sing 365 n y O3 PN NAP sing 366 n n PN O1N NAP doub 367 n n PN O2N NAP sing 368 n n PN O5D NAP sing 369 n n O5D C5D NAP sing 370 n n C5D C4D NAP sing 371 n n C5D H51N NAP sing 372 n n C5D H52N NAP sing 373 n n C4D O4D NAP sing 374 n n C4D C3D NAP sing 375 n n C4D H4D NAP sing 376 n n O4D C1D NAP sing 377 n n C3D O3D NAP sing 378 n n C3D C2D NAP sing 379 n n C3D H3D NAP sing 380 n n O3D HO3N NAP sing 381 n n C2D O2D NAP sing 382 n n C2D C1D NAP sing 383 n n C2D H2D NAP sing 384 n n O2D HO2N NAP sing 385 n n C1D N1N NAP sing 386 n n C1D H1D NAP sing 387 n n N1N C2N NAP sing 388 n y N1N C6N NAP doub 389 n y C2N C3N NAP doub 390 n y C2N H2N NAP sing 391 n n C3N C7N NAP sing 392 n n C3N C4N NAP sing 393 n y C7N O7N NAP doub 394 n n C7N N7N NAP sing 395 n n N7N H71N NAP sing 396 n n N7N H72N NAP sing 397 n n C4N C5N NAP doub 398 n y C4N H4N NAP sing 399 n n C5N C6N NAP sing 400 n y C5N H5N NAP sing 401 n n C6N H6N NAP sing 402 n n P2B O1X NAP doub 403 n n P2B O2X NAP sing 404 n n P2B O3X NAP sing 405 n n O2X HOP2 NAP sing 406 n n O3X HOP3 NAP sing 407 n n # _atom_sites.entry_id 3EAO _atom_sites.fract_transf_matrix[1][1] 0.012783 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000894 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007259 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005933 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 FAD A 1 600 600 FAD FAD . H 3 NAP A 1 601 601 NAP NAP . I 2 FAD B 1 600 600 FAD FAD . J 3 NAP B 1 601 601 NAP NAP . K 2 FAD C 1 600 600 FAD FAD . L 3 NAP C 1 601 601 NAP NAP . M 2 FAD D 1 600 600 FAD FAD . N 3 NAP D 1 601 601 NAP NAP . O 2 FAD E 1 600 600 FAD FAD . P 3 NAP E 1 601 601 NAP NAP . Q 2 FAD F 1 600 600 FAD FAD . R 3 NAP F 1 601 601 NAP NAP . S 4 HOH A 1 602 602 HOH HOH . S 4 HOH A 2 603 603 HOH HOH . S 4 HOH A 3 604 604 HOH HOH . T 4 HOH B 1 602 602 HOH HOH . T 4 HOH B 2 603 603 HOH HOH . T 4 HOH B 3 604 604 HOH HOH . T 4 HOH B 4 605 605 HOH HOH . T 4 HOH B 5 606 606 HOH HOH . T 4 HOH B 6 607 607 HOH HOH . T 4 HOH B 7 608 608 HOH HOH . T 4 HOH B 8 609 609 HOH HOH . U 4 HOH C 1 602 602 HOH HOH . U 4 HOH C 2 603 603 HOH HOH . U 4 HOH C 3 604 604 HOH HOH . U 4 HOH C 4 605 605 HOH HOH . U 4 HOH C 5 606 606 HOH HOH . V 4 HOH D 1 602 602 HOH HOH . V 4 HOH D 2 603 603 HOH HOH . V 4 HOH D 3 604 604 HOH HOH . V 4 HOH D 4 605 605 HOH HOH . V 4 HOH D 5 606 606 HOH HOH . V 4 HOH D 6 607 607 HOH HOH . V 4 HOH D 7 608 608 HOH HOH . V 4 HOH D 8 609 609 HOH HOH . V 4 HOH D 9 610 610 HOH HOH . V 4 HOH D 10 611 611 HOH HOH . V 4 HOH D 11 612 612 HOH HOH . W 4 HOH E 1 602 602 HOH HOH . W 4 HOH E 2 603 603 HOH HOH . W 4 HOH E 3 604 604 HOH HOH . W 4 HOH E 4 605 605 HOH HOH . X 4 HOH F 1 602 602 HOH HOH . X 4 HOH F 2 603 603 HOH HOH . X 4 HOH F 3 604 604 HOH HOH . X 4 HOH F 4 605 605 HOH HOH . X 4 HOH F 5 606 606 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . P 3 29.964 23.154 25.082 1 85.98 ? PA NAP 601 E 1 HETATM 2 O O1A NAP . . . P 3 30.743 23.935 26.087 1 86.23 ? O1A NAP 601 E 1 HETATM 3 O O2A NAP . . . P 3 30.475 21.849 24.597 1 86.2 ? O2A NAP 601 E 1 HETATM 4 O O5B NAP . . . P 3 29.924 24.13 23.857 1 82.51 ? O5B NAP 601 E 1 HETATM 5 C C5B NAP . . . P 3 28.951 25.144 23.764 1 77.96 ? C5B NAP 601 E 1 HETATM 6 C C4B NAP . . . P 3 27.987 24.847 22.573 1 74.67 ? C4B NAP 601 E 1 HETATM 7 O O4B NAP . . . P 3 26.947 25.861 22.537 1 73.67 ? O4B NAP 601 E 1 HETATM 8 C C3B NAP . . . P 3 28.609 24.917 21.173 1 72.67 ? C3B NAP 601 E 1 HETATM 9 O O3B NAP . . . P 3 27.718 24.333 20.229 1 71.86 ? O3B NAP 601 E 1 HETATM 10 C C2B NAP . . . P 3 28.632 26.406 20.959 1 71.49 ? C2B NAP 601 E 1 HETATM 11 O O2B NAP . . . P 3 28.807 26.708 19.578 1 68.25 ? O2B NAP 601 E 1 HETATM 12 C C1B NAP . . . P 3 27.228 26.769 21.432 1 73.08 ? C1B NAP 601 E 1 HETATM 13 N N9A NAP . . . P 3 27.102 28.175 21.914 1 73.41 ? N9A NAP 601 E 1 HETATM 14 C C8A NAP . . . P 3 27.785 28.806 22.882 1 73.25 ? C8A NAP 601 E 1 HETATM 15 N N7A NAP . . . P 3 27.342 30.06 22.98 1 73.15 ? N7A NAP 601 E 1 HETATM 16 C C5A NAP . . . P 3 26.367 30.231 22.083 1 73.3 ? C5A NAP 601 E 1 HETATM 17 C C6A NAP . . . P 3 25.53 31.298 21.717 1 73.83 ? C6A NAP 601 E 1 HETATM 18 N N6A NAP . . . P 3 25.59 32.504 22.297 1 73.69 ? N6A NAP 601 E 1 HETATM 19 N N1A NAP . . . P 3 24.632 31.081 20.728 1 74.43 ? N1A NAP 601 E 1 HETATM 20 C C2A NAP . . . P 3 24.521 29.893 20.102 1 73.94 ? C2A NAP 601 E 1 HETATM 21 N N3A NAP . . . P 3 25.302 28.866 20.426 1 73.51 ? N3A NAP 601 E 1 HETATM 22 C C4A NAP . . . P 3 26.223 29.02 21.404 1 73.32 ? C4A NAP 601 E 1 HETATM 23 O O3 NAP . . . P 3 28.361 22.941 25.535 1 87.71 ? O3 NAP 601 E 1 HETATM 24 P PN NAP . . . P 3 27.561 21.613 26.26 1 88.5 ? PN NAP 601 E 1 HETATM 25 O O1N NAP . . . P 3 27.176 20.719 25.135 1 89.29 ? O1N NAP 601 E 1 HETATM 26 O O2N NAP . . . P 3 26.457 22.222 27.05 1 87.38 ? O2N NAP 601 E 1 HETATM 27 O O5D NAP . . . P 3 28.745 20.854 27.279 1 87.4 ? O5D NAP 601 E 1 HETATM 28 C C5D NAP . . . P 3 28.599 20.232 28.614 1 84.17 ? C5D NAP 601 E 1 HETATM 29 P P2B NAP . . . P 3 30.188 27.393 19.067 1 65.13 ? P2B NAP 601 E 1 HETATM 30 O O1X NAP . . . P 3 31.095 26.215 18.483 1 65.12 ? O1X NAP 601 E 1 HETATM 31 O O2X NAP . . . P 3 29.725 28.294 17.846 1 64.41 ? O2X NAP 601 E 1 HETATM 32 O O3X NAP . . . P 3 30.899 28.161 20.074 1 65.03 ? O3X NAP 601 E 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 32 #