data_3EAO
#
_model_server_result.job_id            G5sSlrQzFBjArpZxysvpdA 
_model_server_result.datetime_utc      '2024-11-24 13:26:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3eao 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":601}' 
#
_entry.id    3EAO 
#
_exptl.entry_id    3EAO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94 
_cell.angle_gamma         90 
_cell.entry_id            3EAO 
_cell.length_a            78.231 
_cell.length_b            137.754 
_cell.length_c            168.954 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3EAO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,G,H,I,J,S,T 1 1 
C,D,K,L,M,N,U,V 2 1 
E,F,O,P,Q,R,W,X 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 H N N 
? 3 J N N 
? 3 L N N 
? 3 N N N 
? 3 P N N 
? 3 R N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 59 A CYS 59 1_555 A SG CYS 64 A CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf2 B SG CYS 59 B CYS 59 1_555 B SG CYS 64 B CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? 
disulf ? disulf3 C SG CYS 59 C CYS 59 1_555 C SG CYS 64 C CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
disulf ? disulf4 D SG CYS 59 D CYS 59 1_555 D SG CYS 64 D CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf5 E SG CYS 59 E CYS 59 1_555 E SG CYS 64 E CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf6 F SG CYS 59 F CYS 59 1_555 F SG CYS 64 F CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
covale ? covale1 A SG CYS 497 A CYS 497 1_555 A SE SEC 498 A SEC 498 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? 
covale ? covale2 D SG CYS 497 D CYS 497 1_555 D SE SEC 498 D SEC 498 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? 
covale ? covale3 E SG CYS 497 E CYS 497 1_555 E SE SEC 498 E SEC 498 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? 
covale ? covale4 F SG CYS 497 F CYS 497 1_555 F SE SEC 498 F SEC 498 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 328 n n 
PA O2A NAP sing 329 n n 
PA O5B NAP sing 330 n n 
PA O3 NAP sing 331 n n 
O2A HOA2 NAP sing 332 n n 
O5B C5B NAP sing 333 n n 
C5B C4B NAP sing 334 n n 
C5B H51A NAP sing 335 n n 
C5B H52A NAP sing 336 n n 
C4B O4B NAP sing 337 n n 
C4B C3B NAP sing 338 n n 
C4B H4B NAP sing 339 n n 
O4B C1B NAP sing 340 n n 
C3B O3B NAP sing 341 n n 
C3B C2B NAP sing 342 n n 
C3B H3B NAP sing 343 n n 
O3B HO3A NAP sing 344 n n 
C2B O2B NAP sing 345 n n 
C2B C1B NAP sing 346 n n 
C2B H2B NAP sing 347 n n 
O2B P2B NAP sing 348 n n 
C1B N9A NAP sing 349 n n 
C1B H1B NAP sing 350 n n 
N9A C8A NAP sing 351 n y 
N9A C4A NAP sing 352 n y 
C8A N7A NAP doub 353 n y 
C8A H8A NAP sing 354 n n 
N7A C5A NAP sing 355 n y 
C5A C6A NAP sing 356 n y 
C5A C4A NAP doub 357 n y 
C6A N6A NAP sing 358 n n 
C6A N1A NAP doub 359 n y 
N6A H61A NAP sing 360 n n 
N6A H62A NAP sing 361 n n 
N1A C2A NAP sing 362 n y 
C2A N3A NAP doub 363 n y 
C2A H2A NAP sing 364 n n 
N3A C4A NAP sing 365 n y 
O3 PN NAP sing 366 n n 
PN O1N NAP doub 367 n n 
PN O2N NAP sing 368 n n 
PN O5D NAP sing 369 n n 
O5D C5D NAP sing 370 n n 
C5D C4D NAP sing 371 n n 
C5D H51N NAP sing 372 n n 
C5D H52N NAP sing 373 n n 
C4D O4D NAP sing 374 n n 
C4D C3D NAP sing 375 n n 
C4D H4D NAP sing 376 n n 
O4D C1D NAP sing 377 n n 
C3D O3D NAP sing 378 n n 
C3D C2D NAP sing 379 n n 
C3D H3D NAP sing 380 n n 
O3D HO3N NAP sing 381 n n 
C2D O2D NAP sing 382 n n 
C2D C1D NAP sing 383 n n 
C2D H2D NAP sing 384 n n 
O2D HO2N NAP sing 385 n n 
C1D N1N NAP sing 386 n n 
C1D H1D NAP sing 387 n n 
N1N C2N NAP sing 388 n y 
N1N C6N NAP doub 389 n y 
C2N C3N NAP doub 390 n y 
C2N H2N NAP sing 391 n n 
C3N C7N NAP sing 392 n n 
C3N C4N NAP sing 393 n y 
C7N O7N NAP doub 394 n n 
C7N N7N NAP sing 395 n n 
N7N H71N NAP sing 396 n n 
N7N H72N NAP sing 397 n n 
C4N C5N NAP doub 398 n y 
C4N H4N NAP sing 399 n n 
C5N C6N NAP sing 400 n y 
C5N H5N NAP sing 401 n n 
C6N H6N NAP sing 402 n n 
P2B O1X NAP doub 403 n n 
P2B O2X NAP sing 404 n n 
P2B O3X NAP sing 405 n n 
O2X HOP2 NAP sing 406 n n 
O3X HOP3 NAP sing 407 n n 
#
_atom_sites.entry_id                     3EAO 
_atom_sites.fract_transf_matrix[1][1]    0.012783 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000894 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007259 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005933 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 FAD A 1 600 600 FAD FAD . 
H 3 NAP A 1 601 601 NAP NAP . 
I 2 FAD B 1 600 600 FAD FAD . 
J 3 NAP B 1 601 601 NAP NAP . 
K 2 FAD C 1 600 600 FAD FAD . 
L 3 NAP C 1 601 601 NAP NAP . 
M 2 FAD D 1 600 600 FAD FAD . 
N 3 NAP D 1 601 601 NAP NAP . 
O 2 FAD E 1 600 600 FAD FAD . 
P 3 NAP E 1 601 601 NAP NAP . 
Q 2 FAD F 1 600 600 FAD FAD . 
R 3 NAP F 1 601 601 NAP NAP . 
S 4 HOH A 1 602 602 HOH HOH . 
S 4 HOH A 2 603 603 HOH HOH . 
S 4 HOH A 3 604 604 HOH HOH . 
T 4 HOH B 1 602 602 HOH HOH . 
T 4 HOH B 2 603 603 HOH HOH . 
T 4 HOH B 3 604 604 HOH HOH . 
T 4 HOH B 4 605 605 HOH HOH . 
T 4 HOH B 5 606 606 HOH HOH . 
T 4 HOH B 6 607 607 HOH HOH . 
T 4 HOH B 7 608 608 HOH HOH . 
T 4 HOH B 8 609 609 HOH HOH . 
U 4 HOH C 1 602 602 HOH HOH . 
U 4 HOH C 2 603 603 HOH HOH . 
U 4 HOH C 3 604 604 HOH HOH . 
U 4 HOH C 4 605 605 HOH HOH . 
U 4 HOH C 5 606 606 HOH HOH . 
V 4 HOH D 1 602 602 HOH HOH . 
V 4 HOH D 2 603 603 HOH HOH . 
V 4 HOH D 3 604 604 HOH HOH . 
V 4 HOH D 4 605 605 HOH HOH . 
V 4 HOH D 5 606 606 HOH HOH . 
V 4 HOH D 6 607 607 HOH HOH . 
V 4 HOH D 7 608 608 HOH HOH . 
V 4 HOH D 8 609 609 HOH HOH . 
V 4 HOH D 9 610 610 HOH HOH . 
V 4 HOH D 10 611 611 HOH HOH . 
V 4 HOH D 11 612 612 HOH HOH . 
W 4 HOH E 1 602 602 HOH HOH . 
W 4 HOH E 2 603 603 HOH HOH . 
W 4 HOH E 3 604 604 HOH HOH . 
W 4 HOH E 4 605 605 HOH HOH . 
X 4 HOH F 1 602 602 HOH HOH . 
X 4 HOH F 2 603 603 HOH HOH . 
X 4 HOH F 3 604 604 HOH HOH . 
X 4 HOH F 4 605 605 HOH HOH . 
X 4 HOH F 5 606 606 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . P 3 29.964 23.154 25.082 1 85.98 ? PA NAP 601 E 1 
HETATM 2 O O1A NAP . . . P 3 30.743 23.935 26.087 1 86.23 ? O1A NAP 601 E 1 
HETATM 3 O O2A NAP . . . P 3 30.475 21.849 24.597 1 86.2 ? O2A NAP 601 E 1 
HETATM 4 O O5B NAP . . . P 3 29.924 24.13 23.857 1 82.51 ? O5B NAP 601 E 1 
HETATM 5 C C5B NAP . . . P 3 28.951 25.144 23.764 1 77.96 ? C5B NAP 601 E 1 
HETATM 6 C C4B NAP . . . P 3 27.987 24.847 22.573 1 74.67 ? C4B NAP 601 E 1 
HETATM 7 O O4B NAP . . . P 3 26.947 25.861 22.537 1 73.67 ? O4B NAP 601 E 1 
HETATM 8 C C3B NAP . . . P 3 28.609 24.917 21.173 1 72.67 ? C3B NAP 601 E 1 
HETATM 9 O O3B NAP . . . P 3 27.718 24.333 20.229 1 71.86 ? O3B NAP 601 E 1 
HETATM 10 C C2B NAP . . . P 3 28.632 26.406 20.959 1 71.49 ? C2B NAP 601 E 1 
HETATM 11 O O2B NAP . . . P 3 28.807 26.708 19.578 1 68.25 ? O2B NAP 601 E 1 
HETATM 12 C C1B NAP . . . P 3 27.228 26.769 21.432 1 73.08 ? C1B NAP 601 E 1 
HETATM 13 N N9A NAP . . . P 3 27.102 28.175 21.914 1 73.41 ? N9A NAP 601 E 1 
HETATM 14 C C8A NAP . . . P 3 27.785 28.806 22.882 1 73.25 ? C8A NAP 601 E 1 
HETATM 15 N N7A NAP . . . P 3 27.342 30.06 22.98 1 73.15 ? N7A NAP 601 E 1 
HETATM 16 C C5A NAP . . . P 3 26.367 30.231 22.083 1 73.3 ? C5A NAP 601 E 1 
HETATM 17 C C6A NAP . . . P 3 25.53 31.298 21.717 1 73.83 ? C6A NAP 601 E 1 
HETATM 18 N N6A NAP . . . P 3 25.59 32.504 22.297 1 73.69 ? N6A NAP 601 E 1 
HETATM 19 N N1A NAP . . . P 3 24.632 31.081 20.728 1 74.43 ? N1A NAP 601 E 1 
HETATM 20 C C2A NAP . . . P 3 24.521 29.893 20.102 1 73.94 ? C2A NAP 601 E 1 
HETATM 21 N N3A NAP . . . P 3 25.302 28.866 20.426 1 73.51 ? N3A NAP 601 E 1 
HETATM 22 C C4A NAP . . . P 3 26.223 29.02 21.404 1 73.32 ? C4A NAP 601 E 1 
HETATM 23 O O3 NAP . . . P 3 28.361 22.941 25.535 1 87.71 ? O3 NAP 601 E 1 
HETATM 24 P PN NAP . . . P 3 27.561 21.613 26.26 1 88.5 ? PN NAP 601 E 1 
HETATM 25 O O1N NAP . . . P 3 27.176 20.719 25.135 1 89.29 ? O1N NAP 601 E 1 
HETATM 26 O O2N NAP . . . P 3 26.457 22.222 27.05 1 87.38 ? O2N NAP 601 E 1 
HETATM 27 O O5D NAP . . . P 3 28.745 20.854 27.279 1 87.4 ? O5D NAP 601 E 1 
HETATM 28 C C5D NAP . . . P 3 28.599 20.232 28.614 1 84.17 ? C5D NAP 601 E 1 
HETATM 29 P P2B NAP . . . P 3 30.188 27.393 19.067 1 65.13 ? P2B NAP 601 E 1 
HETATM 30 O O1X NAP . . . P 3 31.095 26.215 18.483 1 65.12 ? O1X NAP 601 E 1 
HETATM 31 O O2X NAP . . . P 3 29.725 28.294 17.846 1 64.41 ? O2X NAP 601 E 1 
HETATM 32 O O3X NAP . . . P 3 30.899 28.161 20.074 1 65.03 ? O3X NAP 601 E 1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           32 
#