data_3EAX # _model_server_result.job_id J9vOcShGdqkeXFENM7YIBg _model_server_result.datetime_utc '2024-12-07 05:50:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3eax # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":322}' # _entry.id 3EAX # _exptl.entry_id 3EAX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 646.685 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "4,4'-piperazine-1,4-diylbis{1-[3-(benzyloxy)phenyl]-4-oxobutane-1,3-dione}" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3EAX _cell.length_a 88.612 _cell.length_b 88.612 _cell.length_c 104.278 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EAX _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C38 H34 N2 O8' _chem_comp.formula_weight 646.685 _chem_comp.id LZP _chem_comp.mon_nstd_flag . _chem_comp.name "4,4'-piperazine-1,4-diylbis{1-[3-(benzyloxy)phenyl]-4-oxobutane-1,3-dione}" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 LZP doub 218 n y C1 C6 LZP sing 219 n y C2 C3 LZP sing 220 n y C3 C4 LZP doub 221 n y C4 C5 LZP sing 222 n y C5 C6 LZP doub 223 n y C5 C7 LZP sing 224 n n C7 O1 LZP sing 225 n n C8 C9 LZP doub 226 n y C8 C13 LZP sing 227 n y C8 O1 LZP sing 228 n n C9 C10 LZP sing 229 n y C10 C11 LZP doub 230 n y C11 C12 LZP sing 231 n y C12 C13 LZP doub 232 n y C12 C14 LZP sing 233 n n C14 C15 LZP sing 234 n n C14 O2 LZP doub 235 n n C15 C16 LZP sing 236 n n C16 C17 LZP sing 237 n n C16 O3 LZP doub 238 n n C17 N1 LZP sing 239 n n C17 O4 LZP doub 240 n n C18 C19 LZP sing 241 n n C18 N1 LZP sing 242 n n C19 N2 LZP sing 243 n n C20 C21 LZP sing 244 n n C20 N2 LZP sing 245 n n C21 N1 LZP sing 246 n n N2 C22 LZP sing 247 n n C22 C23 LZP sing 248 n n C22 O5 LZP doub 249 n n C23 C24 LZP sing 250 n n C23 O6 LZP doub 251 n n C24 C25 LZP sing 252 n n C25 C27 LZP sing 253 n n C25 O7 LZP doub 254 n n C26 C27 LZP doub 255 n y C26 C31 LZP sing 256 n y C27 C28 LZP sing 257 n y C28 C29 LZP doub 258 n y C29 C30 LZP sing 259 n y C30 C31 LZP doub 260 n y C31 O8 LZP sing 261 n n C32 C34 LZP sing 262 n n C32 O8 LZP sing 263 n n C33 C34 LZP doub 264 n y C33 C38 LZP sing 265 n y C34 C35 LZP sing 266 n y C35 C36 LZP doub 267 n y C36 C37 LZP sing 268 n y C37 C38 LZP doub 269 n y C1 H1 LZP sing 270 n n C2 H2 LZP sing 271 n n C3 H3 LZP sing 272 n n C4 H4 LZP sing 273 n n C6 H6 LZP sing 274 n n C7 H7 LZP sing 275 n n C7 H7A LZP sing 276 n n C9 H9 LZP sing 277 n n C10 H10 LZP sing 278 n n C11 H11 LZP sing 279 n n C13 H13 LZP sing 280 n n C15 H15 LZP sing 281 n n C15 H15A LZP sing 282 n n C18 H18 LZP sing 283 n n C18 H18A LZP sing 284 n n C19 H19 LZP sing 285 n n C19 H19A LZP sing 286 n n C20 H20 LZP sing 287 n n C20 H20A LZP sing 288 n n C21 H21 LZP sing 289 n n C21 H21A LZP sing 290 n n C24 H24 LZP sing 291 n n C24 H24A LZP sing 292 n n C26 H26 LZP sing 293 n n C28 H28 LZP sing 294 n n C29 H29 LZP sing 295 n n C30 H30 LZP sing 296 n n C32 H32 LZP sing 297 n n C32 H32A LZP sing 298 n n C33 H33 LZP sing 299 n n C35 H35 LZP sing 300 n n C36 H36 LZP sing 301 n n C37 H37 LZP sing 302 n n C38 H38 LZP sing 303 n n # _atom_sites.entry_id 3EAX _atom_sites.fract_transf_matrix[1][1] 0.011285 _atom_sites.fract_transf_matrix[1][2] 0.006515 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013031 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00959 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LZP A 1 322 1 LZP LZP . C 3 HOH A 1 323 1 HOH HOH . C 3 HOH A 2 324 2 HOH HOH . C 3 HOH A 3 325 3 HOH HOH . C 3 HOH A 4 326 4 HOH HOH . C 3 HOH A 5 327 5 HOH HOH . C 3 HOH A 6 328 6 HOH HOH . C 3 HOH A 7 329 7 HOH HOH . C 3 HOH A 8 330 8 HOH HOH . C 3 HOH A 9 331 9 HOH HOH . C 3 HOH A 10 332 10 HOH HOH . C 3 HOH A 11 333 11 HOH HOH . C 3 HOH A 12 334 12 HOH HOH . C 3 HOH A 13 335 13 HOH HOH . C 3 HOH A 14 336 14 HOH HOH . C 3 HOH A 15 337 15 HOH HOH . C 3 HOH A 16 338 16 HOH HOH . C 3 HOH A 17 339 17 HOH HOH . C 3 HOH A 18 340 18 HOH HOH . C 3 HOH A 19 341 19 HOH HOH . C 3 HOH A 20 342 20 HOH HOH . C 3 HOH A 21 343 21 HOH HOH . C 3 HOH A 22 344 22 HOH HOH . C 3 HOH A 23 345 23 HOH HOH . C 3 HOH A 24 346 24 HOH HOH . C 3 HOH A 25 347 25 HOH HOH . C 3 HOH A 26 348 26 HOH HOH . C 3 HOH A 27 349 27 HOH HOH . C 3 HOH A 28 350 28 HOH HOH . C 3 HOH A 29 351 29 HOH HOH . C 3 HOH A 30 352 30 HOH HOH . C 3 HOH A 31 353 31 HOH HOH . C 3 HOH A 32 354 32 HOH HOH . C 3 HOH A 33 355 33 HOH HOH . C 3 HOH A 34 356 34 HOH HOH . C 3 HOH A 35 357 35 HOH HOH . C 3 HOH A 36 358 36 HOH HOH . C 3 HOH A 37 359 37 HOH HOH . C 3 HOH A 38 360 38 HOH HOH . C 3 HOH A 39 361 39 HOH HOH . C 3 HOH A 40 362 40 HOH HOH . C 3 HOH A 41 363 41 HOH HOH . C 3 HOH A 42 364 42 HOH HOH . C 3 HOH A 43 365 43 HOH HOH . C 3 HOH A 44 366 44 HOH HOH . C 3 HOH A 45 367 45 HOH HOH . C 3 HOH A 46 368 46 HOH HOH . C 3 HOH A 47 369 47 HOH HOH . C 3 HOH A 48 370 48 HOH HOH . C 3 HOH A 49 371 49 HOH HOH . C 3 HOH A 50 372 50 HOH HOH . C 3 HOH A 51 373 51 HOH HOH . C 3 HOH A 52 374 52 HOH HOH . C 3 HOH A 53 375 53 HOH HOH . C 3 HOH A 54 376 54 HOH HOH . C 3 HOH A 55 377 55 HOH HOH . C 3 HOH A 56 378 56 HOH HOH . C 3 HOH A 57 379 57 HOH HOH . C 3 HOH A 58 380 58 HOH HOH . C 3 HOH A 59 381 59 HOH HOH . C 3 HOH A 60 382 60 HOH HOH . C 3 HOH A 61 383 61 HOH HOH . C 3 HOH A 62 384 62 HOH HOH . C 3 HOH A 63 385 63 HOH HOH . C 3 HOH A 64 386 64 HOH HOH . C 3 HOH A 65 387 65 HOH HOH . C 3 HOH A 66 388 66 HOH HOH . C 3 HOH A 67 389 67 HOH HOH . C 3 HOH A 68 390 68 HOH HOH . C 3 HOH A 69 391 69 HOH HOH . C 3 HOH A 70 392 70 HOH HOH . C 3 HOH A 71 393 71 HOH HOH . C 3 HOH A 72 394 72 HOH HOH . C 3 HOH A 73 395 73 HOH HOH . C 3 HOH A 74 396 74 HOH HOH . C 3 HOH A 75 397 75 HOH HOH . C 3 HOH A 76 398 76 HOH HOH . C 3 HOH A 77 399 77 HOH HOH . C 3 HOH A 78 400 78 HOH HOH . C 3 HOH A 79 401 79 HOH HOH . C 3 HOH A 80 402 80 HOH HOH . C 3 HOH A 81 403 81 HOH HOH . C 3 HOH A 82 404 82 HOH HOH . C 3 HOH A 83 405 83 HOH HOH . C 3 HOH A 84 406 84 HOH HOH . C 3 HOH A 85 407 85 HOH HOH . C 3 HOH A 86 408 86 HOH HOH . C 3 HOH A 87 409 87 HOH HOH . C 3 HOH A 88 410 88 HOH HOH . C 3 HOH A 89 411 89 HOH HOH . C 3 HOH A 90 412 90 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LZP . . . B 2 39.061 20.184 66.465 1 47.3 ? C1 LZP 322 A 1 HETATM 2 C C2 LZP . . . B 2 38.096 19.716 67.454 1 48.18 ? C2 LZP 322 A 1 HETATM 3 C C3 LZP . . . B 2 37.725 18.187 67.511 1 47.66 ? C3 LZP 322 A 1 HETATM 4 C C4 LZP . . . B 2 38.364 17.255 66.561 1 47.3 ? C4 LZP 322 A 1 HETATM 5 C C5 LZP . . . B 2 39.354 17.709 65.541 1 47.58 ? C5 LZP 322 A 1 HETATM 6 C C6 LZP . . . B 2 39.688 19.253 65.527 1 45.69 ? C6 LZP 322 A 1 HETATM 7 C C7 LZP . . . B 2 40.022 16.686 64.538 1 46.33 ? C7 LZP 322 A 1 HETATM 8 C C8 LZP . . . B 2 41.277 14.876 65.901 1 46.59 ? C8 LZP 322 A 1 HETATM 9 C C9 LZP . . . B 2 42.529 15.695 66.093 1 46 ? C9 LZP 322 A 1 HETATM 10 C C10 LZP . . . B 2 43.631 15.259 66.961 1 45.01 ? C10 LZP 322 A 1 HETATM 11 C C11 LZP . . . B 2 43.538 13.993 67.678 1 45.53 ? C11 LZP 322 A 1 HETATM 12 C C12 LZP . . . B 2 42.331 13.127 67.54 1 47.76 ? C12 LZP 322 A 1 HETATM 13 C C13 LZP . . . B 2 41.236 13.59 66.657 1 47.61 ? C13 LZP 322 A 1 HETATM 14 C C14 LZP . . . B 2 42.248 11.801 68.299 1 49.66 ? C14 LZP 322 A 1 HETATM 15 C C15 LZP . . . B 2 42.471 11.787 69.856 1 51.41 ? C15 LZP 322 A 1 HETATM 16 C C16 LZP . . . B 2 43.737 11.078 70.445 1 54.06 ? C16 LZP 322 A 1 HETATM 17 C C17 LZP . . . B 2 44.149 11.384 71.914 1 56.07 ? C17 LZP 322 A 1 HETATM 18 C C18 LZP . . . B 2 45.098 13.014 73.752 1 58.95 ? C18 LZP 322 A 1 HETATM 19 C C19 LZP . . . B 2 44.643 14.504 74.123 1 59.92 ? C19 LZP 322 A 1 HETATM 20 C C20 LZP . . . B 2 43.899 15.042 71.723 1 58.64 ? C20 LZP 322 A 1 HETATM 21 C C21 LZP . . . B 2 44.868 13.848 71.322 1 58.2 ? C21 LZP 322 A 1 HETATM 22 N N1 LZP . . . B 2 44.674 12.673 72.302 1 57.66 ? N1 LZP 322 A 1 HETATM 23 N N2 LZP . . . B 2 43.483 14.904 73.175 1 59.89 ? N2 LZP 322 A 1 HETATM 24 O O1 LZP . . . B 2 40.196 15.309 65.047 1 45.51 ? O1 LZP 322 A 1 HETATM 25 O O2 LZP . . . B 2 42.007 10.738 67.715 1 49.12 ? O2 LZP 322 A 1 HETATM 26 O O3 LZP . . . B 2 44.394 10.275 69.764 1 54.71 ? O3 LZP 322 A 1 HETATM 27 O O4 LZP . . . B 2 44.009 10.456 72.738 1 55.44 ? O4 LZP 322 A 1 HETATM 28 C C22 LZP . . . B 2 42.198 15.126 73.716 1 58.97 ? C22 LZP 322 A 1 HETATM 29 C C23 LZP . . . B 2 41.007 15.492 72.796 1 57.72 ? C23 LZP 322 A 1 HETATM 30 C C24 LZP . . . B 2 39.628 14.853 73.147 1 56.98 ? C24 LZP 322 A 1 HETATM 31 C C25 LZP . . . B 2 39.366 13.329 72.874 1 57 ? C25 LZP 322 A 1 HETATM 32 C C26 LZP . . . B 2 40.013 12.525 75.303 1 56.25 ? C26 LZP 322 A 1 HETATM 33 C C27 LZP . . . B 2 39.944 12.289 73.845 1 56.54 ? C27 LZP 322 A 1 HETATM 34 C C28 LZP . . . B 2 40.46 10.993 73.322 1 56.55 ? C28 LZP 322 A 1 HETATM 35 C C29 LZP . . . B 2 41.016 9.989 74.231 1 56.63 ? C29 LZP 322 A 1 HETATM 36 C C30 LZP . . . B 2 41.07 10.257 75.672 1 56.71 ? C30 LZP 322 A 1 HETATM 37 C C31 LZP . . . B 2 40.569 11.54 76.273 1 56.28 ? C31 LZP 322 A 1 HETATM 38 C C32 LZP . . . B 2 39.476 12.058 78.529 1 54.68 ? C32 LZP 322 A 1 HETATM 39 C C33 LZP . . . B 2 37.717 14.186 78.404 1 53.74 ? C33 LZP 322 A 1 HETATM 40 C C34 LZP . . . B 2 39.149 13.586 78.692 1 54.31 ? C34 LZP 322 A 1 HETATM 41 C C35 LZP . . . B 2 40.198 14.546 79.13 1 53.65 ? C35 LZP 322 A 1 HETATM 42 C C36 LZP . . . B 2 39.927 15.984 79.29 1 53.89 ? C36 LZP 322 A 1 HETATM 43 C C37 LZP . . . B 2 38.484 16.536 78.99 1 53.83 ? C37 LZP 322 A 1 HETATM 44 C C38 LZP . . . B 2 37.439 15.614 78.56 1 54 ? C38 LZP 322 A 1 HETATM 45 O O5 LZP . . . B 2 41.955 15.022 74.946 1 59.35 ? O5 LZP 322 A 1 HETATM 46 O O6 LZP . . . B 2 41.134 16.249 71.824 1 56.85 ? O6 LZP 322 A 1 HETATM 47 O O7 LZP . . . B 2 38.699 12.998 71.883 1 56.62 ? O7 LZP 322 A 1 HETATM 48 O O8 LZP . . . B 2 40.643 11.77 77.688 1 54.78 ? O8 LZP 322 A 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #