data_3EB0 # _model_server_result.job_id ImN8uwZWMIdBaAp9rSwIFg _model_server_result.datetime_utc '2025-04-26 01:08:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3eb0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":385}' # _entry.id 3EB0 # _exptl.entry_id 3EB0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3EB0 _cell.length_a 134.101 _cell.length_b 138.366 _cell.length_c 43.261 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EB0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1 A,C,D,E,I 2 1,2 B,F,G,H,J 3 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 134.101 0 0 3 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 203 C CYS 203 1_555 B SG CYS 203 C CYS 203 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? covale ? covale1 A C ALA 200 A ALA 200 1_555 A N PTR 201 A PTR 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C PTR 201 A PTR 201 1_555 A N ILE 202 A ILE 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale3 B C ALA 200 C ALA 200 1_555 B N PTR 201 C PTR 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale4 B C PTR 201 C PTR 201 1_555 B N ILE 202 C ILE 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 178 n n C1 C2 GOL sing 179 n n C1 H11 GOL sing 180 n n C1 H12 GOL sing 181 n n O1 HO1 GOL sing 182 n n C2 O2 GOL sing 183 n n C2 C3 GOL sing 184 n n C2 H2 GOL sing 185 n n O2 HO2 GOL sing 186 n n C3 O3 GOL sing 187 n n C3 H31 GOL sing 188 n n C3 H32 GOL sing 189 n n O3 HO3 GOL sing 190 n n # _atom_sites.entry_id 3EB0 _atom_sites.fract_transf_matrix[1][1] 0.007457 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007227 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023116 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DRK A 1 384 1 DRK DRK . D 3 GOL A 1 385 1 GOL GOL . E 3 GOL A 1 386 1 GOL GOL . F 2 DRK C 1 384 1 DRK DRK . G 3 GOL C 1 385 1 GOL GOL . H 3 GOL C 1 386 1 GOL GOL . I 4 HOH A 1 387 2 HOH HOH . I 4 HOH A 2 388 4 HOH HOH . I 4 HOH A 3 389 5 HOH HOH . I 4 HOH A 4 390 7 HOH HOH . I 4 HOH A 5 393 10 HOH HOH . I 4 HOH A 6 395 12 HOH HOH . I 4 HOH A 7 399 18 HOH HOH . I 4 HOH A 8 400 19 HOH HOH . I 4 HOH A 9 401 20 HOH HOH . I 4 HOH A 10 402 21 HOH HOH . I 4 HOH A 11 404 23 HOH HOH . I 4 HOH A 12 406 25 HOH HOH . I 4 HOH A 13 407 26 HOH HOH . I 4 HOH A 14 408 27 HOH HOH . I 4 HOH A 15 413 32 HOH HOH . I 4 HOH A 16 415 34 HOH HOH . I 4 HOH A 17 416 35 HOH HOH . I 4 HOH A 18 418 37 HOH HOH . I 4 HOH A 19 419 38 HOH HOH . I 4 HOH A 20 420 39 HOH HOH . I 4 HOH A 21 421 41 HOH HOH . I 4 HOH A 22 423 43 HOH HOH . I 4 HOH A 23 424 44 HOH HOH . I 4 HOH A 24 426 46 HOH HOH . I 4 HOH A 25 429 49 HOH HOH . I 4 HOH A 26 431 51 HOH HOH . I 4 HOH A 27 434 54 HOH HOH . I 4 HOH A 28 435 55 HOH HOH . I 4 HOH A 29 436 56 HOH HOH . I 4 HOH A 30 437 58 HOH HOH . I 4 HOH A 31 439 60 HOH HOH . I 4 HOH A 32 444 65 HOH HOH . I 4 HOH A 33 446 67 HOH HOH . I 4 HOH A 34 447 68 HOH HOH . I 4 HOH A 35 448 69 HOH HOH . I 4 HOH A 36 449 70 HOH HOH . I 4 HOH A 37 450 71 HOH HOH . I 4 HOH A 38 451 72 HOH HOH . I 4 HOH A 39 452 73 HOH HOH . I 4 HOH A 40 454 75 HOH HOH . I 4 HOH A 41 455 76 HOH HOH . I 4 HOH A 42 456 78 HOH HOH . I 4 HOH A 43 457 79 HOH HOH . I 4 HOH A 44 459 81 HOH HOH . I 4 HOH A 45 460 82 HOH HOH . I 4 HOH A 46 461 83 HOH HOH . I 4 HOH A 47 465 87 HOH HOH . I 4 HOH A 48 466 88 HOH HOH . I 4 HOH A 49 467 89 HOH HOH . I 4 HOH A 50 468 90 HOH HOH . I 4 HOH A 51 469 91 HOH HOH . I 4 HOH A 52 470 92 HOH HOH . I 4 HOH A 53 471 93 HOH HOH . I 4 HOH A 54 474 98 HOH HOH . I 4 HOH A 55 476 101 HOH HOH . I 4 HOH A 56 477 102 HOH HOH . I 4 HOH A 57 478 103 HOH HOH . I 4 HOH A 58 479 104 HOH HOH . I 4 HOH A 59 480 105 HOH HOH . I 4 HOH A 60 482 108 HOH HOH . I 4 HOH A 61 483 109 HOH HOH . I 4 HOH A 62 484 110 HOH HOH . I 4 HOH A 63 485 111 HOH HOH . I 4 HOH A 64 486 112 HOH HOH . I 4 HOH A 65 502 130 HOH HOH . I 4 HOH A 66 503 131 HOH HOH . I 4 HOH A 67 504 135 HOH HOH . I 4 HOH A 68 505 137 HOH HOH . I 4 HOH A 69 509 141 HOH HOH . I 4 HOH A 70 511 143 HOH HOH . I 4 HOH A 71 512 144 HOH HOH . I 4 HOH A 72 517 149 HOH HOH . I 4 HOH A 73 518 150 HOH HOH . I 4 HOH A 74 519 151 HOH HOH . I 4 HOH A 75 520 152 HOH HOH . I 4 HOH A 76 521 153 HOH HOH . I 4 HOH A 77 522 154 HOH HOH . I 4 HOH A 78 523 155 HOH HOH . I 4 HOH A 79 524 156 HOH HOH . I 4 HOH A 80 525 157 HOH HOH . I 4 HOH A 81 526 158 HOH HOH . I 4 HOH A 82 527 159 HOH HOH . I 4 HOH A 83 528 160 HOH HOH . I 4 HOH A 84 529 161 HOH HOH . I 4 HOH A 85 530 162 HOH HOH . I 4 HOH A 86 533 165 HOH HOH . J 4 HOH C 1 387 1 HOH HOH . J 4 HOH C 2 388 3 HOH HOH . J 4 HOH C 3 389 6 HOH HOH . J 4 HOH C 4 391 8 HOH HOH . J 4 HOH C 5 392 9 HOH HOH . J 4 HOH C 6 394 11 HOH HOH . J 4 HOH C 7 396 13 HOH HOH . J 4 HOH C 8 397 15 HOH HOH . J 4 HOH C 9 398 16 HOH HOH . J 4 HOH C 10 403 22 HOH HOH . J 4 HOH C 11 405 24 HOH HOH . J 4 HOH C 12 409 28 HOH HOH . J 4 HOH C 13 410 29 HOH HOH . J 4 HOH C 14 411 30 HOH HOH . J 4 HOH C 15 412 31 HOH HOH . J 4 HOH C 16 414 33 HOH HOH . J 4 HOH C 17 417 36 HOH HOH . J 4 HOH C 18 422 42 HOH HOH . J 4 HOH C 19 425 45 HOH HOH . J 4 HOH C 20 427 47 HOH HOH . J 4 HOH C 21 428 48 HOH HOH . J 4 HOH C 22 430 50 HOH HOH . J 4 HOH C 23 432 52 HOH HOH . J 4 HOH C 24 433 53 HOH HOH . J 4 HOH C 25 438 59 HOH HOH . J 4 HOH C 26 440 61 HOH HOH . J 4 HOH C 27 441 62 HOH HOH . J 4 HOH C 28 442 63 HOH HOH . J 4 HOH C 29 443 64 HOH HOH . J 4 HOH C 30 445 66 HOH HOH . J 4 HOH C 31 453 74 HOH HOH . J 4 HOH C 32 458 80 HOH HOH . J 4 HOH C 33 462 84 HOH HOH . J 4 HOH C 34 463 85 HOH HOH . J 4 HOH C 35 464 86 HOH HOH . J 4 HOH C 36 472 95 HOH HOH . J 4 HOH C 37 473 96 HOH HOH . J 4 HOH C 38 475 100 HOH HOH . J 4 HOH C 39 481 107 HOH HOH . J 4 HOH C 40 487 113 HOH HOH . J 4 HOH C 41 488 114 HOH HOH . J 4 HOH C 42 489 115 HOH HOH . J 4 HOH C 43 490 116 HOH HOH . J 4 HOH C 44 491 117 HOH HOH . J 4 HOH C 45 492 118 HOH HOH . J 4 HOH C 46 493 119 HOH HOH . J 4 HOH C 47 494 120 HOH HOH . J 4 HOH C 48 495 121 HOH HOH . J 4 HOH C 49 496 122 HOH HOH . J 4 HOH C 50 497 124 HOH HOH . J 4 HOH C 51 498 126 HOH HOH . J 4 HOH C 52 499 127 HOH HOH . J 4 HOH C 53 500 128 HOH HOH . J 4 HOH C 54 501 129 HOH HOH . J 4 HOH C 55 506 138 HOH HOH . J 4 HOH C 56 507 139 HOH HOH . J 4 HOH C 57 508 140 HOH HOH . J 4 HOH C 58 510 142 HOH HOH . J 4 HOH C 59 513 145 HOH HOH . J 4 HOH C 60 514 146 HOH HOH . J 4 HOH C 61 515 147 HOH HOH . J 4 HOH C 62 516 148 HOH HOH . J 4 HOH C 63 531 163 HOH HOH . J 4 HOH C 64 532 164 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 51.111 21.676 -9.478 1 50.7 ? C1 GOL 385 A 1 HETATM 2 O O1 GOL . . . D 3 51.091 22.555 -10.592 1 50.33 ? O1 GOL 385 A 1 HETATM 3 C C2 GOL . . . D 3 52.528 21.553 -8.899 1 50.15 ? C2 GOL 385 A 1 HETATM 4 O O2 GOL . . . D 3 52.948 20.207 -8.918 1 49.43 ? O2 GOL 385 A 1 HETATM 5 C C3 GOL . . . D 3 52.642 22.091 -7.467 1 49.71 ? C3 GOL 385 A 1 HETATM 6 O O3 GOL . . . D 3 51.659 23.068 -7.199 1 49.44 ? O3 GOL 385 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 6 #