data_3EB3 # _model_server_result.job_id zcPNhAfMVWPEpwksEMW2lA _model_server_result.datetime_utc '2024-10-12 02:28:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3eb3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1001}' # _entry.id 3EB3 # _exptl.entry_id 3EB3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3EB3 _cell.length_a 113.198 _cell.length_b 113.198 _cell.length_c 146.691 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EB3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 113.198 113.198 0 3 'crystal symmetry operation' 3_655 -y+1,x,z 0 -1 0 1 0 0 0 0 1 113.198 0 0 4 'crystal symmetry operation' 4_565 y,-x+1,z 0 1 0 -1 0 0 0 0 1 0 113.198 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 237 n n PA O2A NDP sing 238 n n PA O5B NDP sing 239 n n PA O3 NDP sing 240 n n O2A HOA2 NDP sing 241 n n O5B C5B NDP sing 242 n n C5B C4B NDP sing 243 n n C5B H51A NDP sing 244 n n C5B H52A NDP sing 245 n n C4B O4B NDP sing 246 n n C4B C3B NDP sing 247 n n C4B H4B NDP sing 248 n n O4B C1B NDP sing 249 n n C3B O3B NDP sing 250 n n C3B C2B NDP sing 251 n n C3B H3B NDP sing 252 n n O3B HO3A NDP sing 253 n n C2B O2B NDP sing 254 n n C2B C1B NDP sing 255 n n C2B H2B NDP sing 256 n n O2B P2B NDP sing 257 n n C1B N9A NDP sing 258 n n C1B H1B NDP sing 259 n n N9A C8A NDP sing 260 n y N9A C4A NDP sing 261 n y C8A N7A NDP doub 262 n y C8A H8A NDP sing 263 n n N7A C5A NDP sing 264 n y C5A C6A NDP sing 265 n y C5A C4A NDP doub 266 n y C6A N6A NDP sing 267 n n C6A N1A NDP doub 268 n y N6A H61A NDP sing 269 n n N6A H62A NDP sing 270 n n N1A C2A NDP sing 271 n y C2A N3A NDP doub 272 n y C2A H2A NDP sing 273 n n N3A C4A NDP sing 274 n y O3 PN NDP sing 275 n n PN O1N NDP doub 276 n n PN O2N NDP sing 277 n n PN O5D NDP sing 278 n n O2N H21N NDP sing 279 n n O5D C5D NDP sing 280 n n C5D C4D NDP sing 281 n n C5D H51N NDP sing 282 n n C5D H52N NDP sing 283 n n C4D O4D NDP sing 284 n n C4D C3D NDP sing 285 n n C4D H4D NDP sing 286 n n O4D C1D NDP sing 287 n n C3D O3D NDP sing 288 n n C3D C2D NDP sing 289 n n C3D H3D NDP sing 290 n n O3D HO3N NDP sing 291 n n C2D O2D NDP sing 292 n n C2D C1D NDP sing 293 n n C2D H2D NDP sing 294 n n O2D HO2N NDP sing 295 n n C1D N1N NDP sing 296 n n C1D H1D NDP sing 297 n n N1N C2N NDP sing 298 n n N1N C6N NDP sing 299 n n C2N C3N NDP doub 300 n n C2N H2N NDP sing 301 n n C3N C7N NDP sing 302 n n C3N C4N NDP sing 303 n n C7N O7N NDP doub 304 n n C7N N7N NDP sing 305 n n N7N H71N NDP sing 306 n n N7N H72N NDP sing 307 n n C4N C5N NDP sing 308 n n C4N H41N NDP sing 309 n n C4N H42N NDP sing 310 n n C5N C6N NDP doub 311 n n C5N H5N NDP sing 312 n n C6N H6N NDP sing 313 n n P2B O1X NDP doub 314 n n P2B O2X NDP sing 315 n n P2B O3X NDP sing 316 n n O2X HOP2 NDP sing 317 n n O3X HOP3 NDP sing 318 n n # _atom_sites.entry_id 3EB3 _atom_sites.fract_transf_matrix[1][1] 0.008834 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008834 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006817 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NDP A 1 1001 1001 NDP NDP . C 3 PDN A 1 601 601 PDN PDN . D 4 HOH A 1 1002 1 HOH HOH . D 4 HOH A 2 1003 2 HOH HOH . D 4 HOH A 3 1004 3 HOH HOH . D 4 HOH A 4 1005 4 HOH HOH . D 4 HOH A 5 1006 5 HOH HOH . D 4 HOH A 6 1007 6 HOH HOH . D 4 HOH A 7 1008 7 HOH HOH . D 4 HOH A 8 1009 8 HOH HOH . D 4 HOH A 9 1010 9 HOH HOH . D 4 HOH A 10 1011 10 HOH HOH . D 4 HOH A 11 1012 11 HOH HOH . D 4 HOH A 12 1013 12 HOH HOH . D 4 HOH A 13 1014 13 HOH HOH . D 4 HOH A 14 1015 14 HOH HOH . D 4 HOH A 15 1016 15 HOH HOH . D 4 HOH A 16 1017 16 HOH HOH . D 4 HOH A 17 1018 17 HOH HOH . D 4 HOH A 18 1019 18 HOH HOH . D 4 HOH A 19 1020 19 HOH HOH . D 4 HOH A 20 1021 20 HOH HOH . D 4 HOH A 21 1022 21 HOH HOH . D 4 HOH A 22 1023 22 HOH HOH . D 4 HOH A 23 1024 23 HOH HOH . D 4 HOH A 24 1025 24 HOH HOH . D 4 HOH A 25 1026 25 HOH HOH . D 4 HOH A 26 1027 26 HOH HOH . D 4 HOH A 27 1028 27 HOH HOH . D 4 HOH A 28 1029 28 HOH HOH . D 4 HOH A 29 1030 29 HOH HOH . D 4 HOH A 30 1031 30 HOH HOH . D 4 HOH A 31 1032 31 HOH HOH . D 4 HOH A 32 1033 32 HOH HOH . D 4 HOH A 33 1034 33 HOH HOH . D 4 HOH A 34 1035 34 HOH HOH . D 4 HOH A 35 1036 35 HOH HOH . D 4 HOH A 36 1037 36 HOH HOH . D 4 HOH A 37 1038 37 HOH HOH . D 4 HOH A 38 1039 38 HOH HOH . D 4 HOH A 39 1040 39 HOH HOH . D 4 HOH A 40 1041 40 HOH HOH . D 4 HOH A 41 1042 41 HOH HOH . D 4 HOH A 42 1043 42 HOH HOH . D 4 HOH A 43 1044 43 HOH HOH . D 4 HOH A 44 1045 44 HOH HOH . D 4 HOH A 45 1046 45 HOH HOH . D 4 HOH A 46 1047 46 HOH HOH . D 4 HOH A 47 1048 47 HOH HOH . D 4 HOH A 48 1049 48 HOH HOH . D 4 HOH A 49 1050 49 HOH HOH . D 4 HOH A 50 1051 50 HOH HOH . D 4 HOH A 51 1052 51 HOH HOH . D 4 HOH A 52 1053 52 HOH HOH . D 4 HOH A 53 1054 53 HOH HOH . D 4 HOH A 54 1055 54 HOH HOH . D 4 HOH A 55 1056 55 HOH HOH . D 4 HOH A 56 1057 56 HOH HOH . D 4 HOH A 57 1058 57 HOH HOH . D 4 HOH A 58 1059 58 HOH HOH . D 4 HOH A 59 1060 59 HOH HOH . D 4 HOH A 60 1061 60 HOH HOH . D 4 HOH A 61 1062 61 HOH HOH . D 4 HOH A 62 1063 62 HOH HOH . D 4 HOH A 63 1064 63 HOH HOH . D 4 HOH A 64 1065 64 HOH HOH . D 4 HOH A 65 1066 65 HOH HOH . D 4 HOH A 66 1067 66 HOH HOH . D 4 HOH A 67 1068 67 HOH HOH . D 4 HOH A 68 1069 68 HOH HOH . D 4 HOH A 69 1070 69 HOH HOH . D 4 HOH A 70 1071 70 HOH HOH . D 4 HOH A 71 1072 71 HOH HOH . D 4 HOH A 72 1073 72 HOH HOH . D 4 HOH A 73 1074 73 HOH HOH . D 4 HOH A 74 1075 74 HOH HOH . D 4 HOH A 75 1076 75 HOH HOH . D 4 HOH A 76 1077 76 HOH HOH . D 4 HOH A 77 1078 77 HOH HOH . D 4 HOH A 78 1079 78 HOH HOH . D 4 HOH A 79 1080 79 HOH HOH . D 4 HOH A 80 1081 80 HOH HOH . D 4 HOH A 81 1082 81 HOH HOH . D 4 HOH A 82 1083 82 HOH HOH . D 4 HOH A 83 1084 83 HOH HOH . D 4 HOH A 84 1085 84 HOH HOH . D 4 HOH A 85 1086 85 HOH HOH . D 4 HOH A 86 1087 86 HOH HOH . D 4 HOH A 87 1088 87 HOH HOH . D 4 HOH A 88 1089 88 HOH HOH . D 4 HOH A 89 1090 89 HOH HOH . D 4 HOH A 90 1091 90 HOH HOH . D 4 HOH A 91 1092 91 HOH HOH . D 4 HOH A 92 1093 92 HOH HOH . D 4 HOH A 93 1094 93 HOH HOH . D 4 HOH A 94 1095 94 HOH HOH . D 4 HOH A 95 1096 95 HOH HOH . D 4 HOH A 96 1097 96 HOH HOH . D 4 HOH A 97 1098 97 HOH HOH . D 4 HOH A 98 1099 98 HOH HOH . D 4 HOH A 99 1100 99 HOH HOH . D 4 HOH A 100 1101 100 HOH HOH . D 4 HOH A 101 1102 101 HOH HOH . D 4 HOH A 102 1103 102 HOH HOH . D 4 HOH A 103 1104 103 HOH HOH . D 4 HOH A 104 1105 104 HOH HOH . D 4 HOH A 105 1106 105 HOH HOH . D 4 HOH A 106 1107 106 HOH HOH . D 4 HOH A 107 1108 107 HOH HOH . D 4 HOH A 108 1109 108 HOH HOH . D 4 HOH A 109 1110 109 HOH HOH . D 4 HOH A 110 1111 110 HOH HOH . D 4 HOH A 111 1112 111 HOH HOH . D 4 HOH A 112 1113 112 HOH HOH . D 4 HOH A 113 1114 113 HOH HOH . D 4 HOH A 114 1115 114 HOH HOH . D 4 HOH A 115 1116 115 HOH HOH . D 4 HOH A 116 1117 116 HOH HOH . D 4 HOH A 117 1118 117 HOH HOH . D 4 HOH A 118 1119 118 HOH HOH . D 4 HOH A 119 1120 119 HOH HOH . D 4 HOH A 120 1121 120 HOH HOH . D 4 HOH A 121 1122 121 HOH HOH . D 4 HOH A 122 1123 122 HOH HOH . D 4 HOH A 123 1124 123 HOH HOH . D 4 HOH A 124 1125 124 HOH HOH . D 4 HOH A 125 1126 125 HOH HOH . D 4 HOH A 126 1127 126 HOH HOH . D 4 HOH A 127 1128 127 HOH HOH . D 4 HOH A 128 1129 128 HOH HOH . D 4 HOH A 129 1130 129 HOH HOH . D 4 HOH A 130 1131 130 HOH HOH . D 4 HOH A 131 1132 132 HOH HOH . D 4 HOH A 132 1133 133 HOH HOH . D 4 HOH A 133 1134 134 HOH HOH . D 4 HOH A 134 1135 135 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . B 2 17.728 47.769 21.786 1 26.27 ? PA NDP 1001 A 1 HETATM 2 O O1A NDP . . . B 2 17.208 48.476 20.598 1 26.13 ? O1A NDP 1001 A 1 HETATM 3 O O2A NDP . . . B 2 17.84 46.286 21.762 1 26.2 ? O2A NDP 1001 A 1 HETATM 4 O O5B NDP . . . B 2 16.868 48.259 23.031 1 25.51 ? O5B NDP 1001 A 1 HETATM 5 C C5B NDP . . . B 2 17.199 47.725 24.329 1 25.05 ? C5B NDP 1001 A 1 HETATM 6 C C4B NDP . . . B 2 16.207 48.317 25.287 1 24.1 ? C4B NDP 1001 A 1 HETATM 7 O O4B NDP . . . B 2 14.875 47.808 24.902 1 26.42 ? O4B NDP 1001 A 1 HETATM 8 C C3B NDP . . . B 2 16.371 47.929 26.76 1 24.28 ? C3B NDP 1001 A 1 HETATM 9 O O3B NDP . . . B 2 17.068 48.952 27.432 1 23.9 ? O3B NDP 1001 A 1 HETATM 10 C C2B NDP . . . B 2 14.923 47.749 27.231 1 25.53 ? C2B NDP 1001 A 1 HETATM 11 O O2B NDP . . . B 2 14.375 49.003 27.597 1 27.22 ? O2B NDP 1001 A 1 HETATM 12 C C1B NDP . . . B 2 14.215 47.187 26.01 1 27.35 ? C1B NDP 1001 A 1 HETATM 13 N N9A NDP . . . B 2 14.241 45.7 25.888 1 28.18 ? N9A NDP 1001 A 1 HETATM 14 C C8A NDP . . . B 2 15.342 44.88 25.677 1 28.62 ? C8A NDP 1001 A 1 HETATM 15 N N7A NDP . . . B 2 15.045 43.604 25.61 1 31.23 ? N7A NDP 1001 A 1 HETATM 16 C C5A NDP . . . B 2 13.7 43.572 25.784 1 29.42 ? C5A NDP 1001 A 1 HETATM 17 C C6A NDP . . . B 2 12.778 42.495 25.809 1 31.55 ? C6A NDP 1001 A 1 HETATM 18 N N6A NDP . . . B 2 13.187 41.23 25.651 1 30.05 ? N6A NDP 1001 A 1 HETATM 19 N N1A NDP . . . B 2 11.452 42.799 26.004 1 30.82 ? N1A NDP 1001 A 1 HETATM 20 C C2A NDP . . . B 2 11.051 44.087 26.163 1 31.71 ? C2A NDP 1001 A 1 HETATM 21 N N3A NDP . . . B 2 11.852 45.188 26.151 1 31.59 ? N3A NDP 1001 A 1 HETATM 22 C C4A NDP . . . B 2 13.172 44.853 25.946 1 29.77 ? C4A NDP 1001 A 1 HETATM 23 O O3 NDP . . . B 2 19.174 48.404 22.151 1 24.11 ? O3 NDP 1001 A 1 HETATM 24 P PN NDP . . . B 2 19.841 49.749 22.647 1 24.12 ? PN NDP 1001 A 1 HETATM 25 O O1N NDP . . . B 2 19.873 49.79 24.13 1 23.03 ? O1N NDP 1001 A 1 HETATM 26 O O2N NDP . . . B 2 19.099 50.845 21.95 1 22.35 ? O2N NDP 1001 A 1 HETATM 27 O O5D NDP . . . B 2 21.316 49.71 22.028 1 22.24 ? O5D NDP 1001 A 1 HETATM 28 C C5D NDP . . . B 2 22.224 48.66 22.377 1 23.17 ? C5D NDP 1001 A 1 HETATM 29 C C4D NDP . . . B 2 23.62 49.191 22.543 1 21.8 ? C4D NDP 1001 A 1 HETATM 30 O O4D NDP . . . B 2 24.09 49.72 21.285 1 21.36 ? O4D NDP 1001 A 1 HETATM 31 C C3D NDP . . . B 2 23.799 50.364 23.517 1 21.64 ? C3D NDP 1001 A 1 HETATM 32 O O3D NDP . . . B 2 23.736 50.04 24.875 1 22.58 ? O3D NDP 1001 A 1 HETATM 33 C C2D NDP . . . B 2 25.124 50.956 23.033 1 21.45 ? C2D NDP 1001 A 1 HETATM 34 O O2D NDP . . . B 2 26.189 50.225 23.614 1 22.6 ? O2D NDP 1001 A 1 HETATM 35 C C1D NDP . . . B 2 24.993 50.783 21.516 1 20.58 ? C1D NDP 1001 A 1 HETATM 36 N N1N NDP . . . B 2 24.498 52.016 20.83 1 22.29 ? N1N NDP 1001 A 1 HETATM 37 C C2N NDP . . . B 2 25.404 52.733 20.067 1 21.87 ? C2N NDP 1001 A 1 HETATM 38 C C3N NDP . . . B 2 25.02 53.904 19.403 1 22.39 ? C3N NDP 1001 A 1 HETATM 39 C C7N NDP . . . B 2 25.984 54.702 18.556 1 23.29 ? C7N NDP 1001 A 1 HETATM 40 O O7N NDP . . . B 2 25.711 55.886 18.307 1 23.47 ? O7N NDP 1001 A 1 HETATM 41 N N7N NDP . . . B 2 27.084 54.086 18.108 1 21.88 ? N7N NDP 1001 A 1 HETATM 42 C C4N NDP . . . B 2 23.668 54.366 19.526 1 22.61 ? C4N NDP 1001 A 1 HETATM 43 C C5N NDP . . . B 2 22.751 53.634 20.3 1 23.86 ? C5N NDP 1001 A 1 HETATM 44 C C6N NDP . . . B 2 23.155 52.473 20.945 1 21.78 ? C6N NDP 1001 A 1 HETATM 45 P P2B NDP . . . B 2 13.14 49.282 28.602 1 29.08 ? P2B NDP 1001 A 1 HETATM 46 O O1X NDP . . . B 2 13.438 50.562 29.329 1 25.9 ? O1X NDP 1001 A 1 HETATM 47 O O2X NDP . . . B 2 11.976 49.319 27.633 1 26.1 ? O2X NDP 1001 A 1 HETATM 48 O O3X NDP . . . B 2 13.061 48.084 29.544 1 29.65 ? O3X NDP 1001 A 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 48 #