data_3EB4 # _model_server_result.job_id 782sHm9NVLNSW_3RJEjQjw _model_server_result.datetime_utc '2024-11-24 06:07:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3eb4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 3EB4 # _exptl.entry_id 3EB4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 358.428 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 17,21-DIHYDROXYPREGNA-1,4-DIENE-3,11,20-TRIONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3EB4 _cell.length_a 113.26 _cell.length_b 113.26 _cell.length_c 147.266 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EB4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 113.26 113.26 0 3 'crystal symmetry operation' 3_655 -y+1,x,z 0 -1 0 1 0 0 0 0 1 113.26 0 0 4 'crystal symmetry operation' 4_565 y,-x+1,z 0 1 0 -1 0 0 0 0 1 0 113.26 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H26 O5' _chem_comp.formula_weight 358.428 _chem_comp.id PDN _chem_comp.mon_nstd_flag . _chem_comp.name 17,21-DIHYDROXYPREGNA-1,4-DIENE-3,11,20-TRIONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'PREDNISONE;1,4 PREGNADIENE-17ALPHA,21-DIOL-3,11,20-TRIONE;1-CORTISONE;DEHYDROCORTISONE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PDN doub 319 n n C1 C10 PDN sing 320 n n C1 HC1 PDN sing 321 n n C2 C3 PDN sing 322 n n C2 HC2 PDN sing 323 n n C3 C4 PDN sing 324 n n C3 O1 PDN doub 325 n n C4 C5 PDN doub 326 n n C4 HC4 PDN sing 327 n n C5 C6 PDN sing 328 n n C5 C10 PDN sing 329 n n C6 C7 PDN sing 330 n n C6 HC61 PDN sing 331 n n C6 HC62 PDN sing 332 n n C7 C8 PDN sing 333 n n C7 HC71 PDN sing 334 n n C7 HC72 PDN sing 335 n n C8 C9 PDN sing 336 n n C8 C14 PDN sing 337 n n C8 HC8 PDN sing 338 n n C9 C10 PDN sing 339 n n C9 C11 PDN sing 340 n n C9 HC9 PDN sing 341 n n C10 C19 PDN sing 342 n n C11 C12 PDN sing 343 n n C11 O2 PDN doub 344 n n C12 C13 PDN sing 345 n n C12 H121 PDN sing 346 n n C12 H122 PDN sing 347 n n C13 C14 PDN sing 348 n n C13 C17 PDN sing 349 n n C13 C18 PDN sing 350 n n C14 C15 PDN sing 351 n n C14 HC41 PDN sing 352 n n C15 C16 PDN sing 353 n n C15 H151 PDN sing 354 n n C15 H152 PDN sing 355 n n C16 C17 PDN sing 356 n n C16 H161 PDN sing 357 n n C16 H162 PDN sing 358 n n C17 C20 PDN sing 359 n n C17 O3 PDN sing 360 n n C18 H181 PDN sing 361 n n C18 H182 PDN sing 362 n n C18 H183 PDN sing 363 n n C19 H191 PDN sing 364 n n C19 H192 PDN sing 365 n n C19 H193 PDN sing 366 n n C20 C21 PDN doub 367 z n C20 O4 PDN sing 368 n n C21 O5 PDN sing 369 n n C21 HC12 PDN sing 370 n n O3 HO3 PDN sing 371 n n O4 HO4 PDN sing 372 n n O5 HO5 PDN sing 373 n n # _atom_sites.entry_id 3EB4 _atom_sites.fract_transf_matrix[1][1] 0.008829 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008829 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00679 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NDP A 1 1001 1001 NDP NDP . C 3 PDN A 1 501 501 PDN PDN . D 4 HOH A 1 1002 1 HOH HOH . D 4 HOH A 2 1003 2 HOH HOH . D 4 HOH A 3 1004 3 HOH HOH . D 4 HOH A 4 1005 4 HOH HOH . D 4 HOH A 5 1006 5 HOH HOH . D 4 HOH A 6 1007 6 HOH HOH . D 4 HOH A 7 1008 7 HOH HOH . D 4 HOH A 8 1009 8 HOH HOH . D 4 HOH A 9 1010 9 HOH HOH . D 4 HOH A 10 1011 10 HOH HOH . D 4 HOH A 11 1012 11 HOH HOH . D 4 HOH A 12 1013 12 HOH HOH . D 4 HOH A 13 1014 13 HOH HOH . D 4 HOH A 14 1015 14 HOH HOH . D 4 HOH A 15 1016 15 HOH HOH . D 4 HOH A 16 1017 16 HOH HOH . D 4 HOH A 17 1018 17 HOH HOH . D 4 HOH A 18 1019 18 HOH HOH . D 4 HOH A 19 1020 19 HOH HOH . D 4 HOH A 20 1021 20 HOH HOH . D 4 HOH A 21 1022 21 HOH HOH . D 4 HOH A 22 1023 22 HOH HOH . D 4 HOH A 23 1024 23 HOH HOH . D 4 HOH A 24 1025 24 HOH HOH . D 4 HOH A 25 1026 25 HOH HOH . D 4 HOH A 26 1027 26 HOH HOH . D 4 HOH A 27 1028 27 HOH HOH . D 4 HOH A 28 1029 28 HOH HOH . D 4 HOH A 29 1030 29 HOH HOH . D 4 HOH A 30 1031 30 HOH HOH . D 4 HOH A 31 1032 31 HOH HOH . D 4 HOH A 32 1033 32 HOH HOH . D 4 HOH A 33 1034 33 HOH HOH . D 4 HOH A 34 1035 34 HOH HOH . D 4 HOH A 35 1036 35 HOH HOH . D 4 HOH A 36 1037 36 HOH HOH . D 4 HOH A 37 1038 37 HOH HOH . D 4 HOH A 38 1039 38 HOH HOH . D 4 HOH A 39 1040 39 HOH HOH . D 4 HOH A 40 1041 40 HOH HOH . D 4 HOH A 41 1042 41 HOH HOH . D 4 HOH A 42 1043 42 HOH HOH . D 4 HOH A 43 1044 43 HOH HOH . D 4 HOH A 44 1045 44 HOH HOH . D 4 HOH A 45 1046 45 HOH HOH . D 4 HOH A 46 1047 46 HOH HOH . D 4 HOH A 47 1048 47 HOH HOH . D 4 HOH A 48 1049 48 HOH HOH . D 4 HOH A 49 1050 49 HOH HOH . D 4 HOH A 50 1051 50 HOH HOH . D 4 HOH A 51 1052 51 HOH HOH . D 4 HOH A 52 1053 52 HOH HOH . D 4 HOH A 53 1054 53 HOH HOH . D 4 HOH A 54 1055 54 HOH HOH . D 4 HOH A 55 1056 55 HOH HOH . D 4 HOH A 56 1057 56 HOH HOH . D 4 HOH A 57 1058 57 HOH HOH . D 4 HOH A 58 1059 58 HOH HOH . D 4 HOH A 59 1060 59 HOH HOH . D 4 HOH A 60 1061 60 HOH HOH . D 4 HOH A 61 1062 61 HOH HOH . D 4 HOH A 62 1063 62 HOH HOH . D 4 HOH A 63 1064 63 HOH HOH . D 4 HOH A 64 1065 64 HOH HOH . D 4 HOH A 65 1066 65 HOH HOH . D 4 HOH A 66 1067 66 HOH HOH . D 4 HOH A 67 1068 67 HOH HOH . D 4 HOH A 68 1069 68 HOH HOH . D 4 HOH A 69 1070 69 HOH HOH . D 4 HOH A 70 1071 70 HOH HOH . D 4 HOH A 71 1072 71 HOH HOH . D 4 HOH A 72 1073 72 HOH HOH . D 4 HOH A 73 1074 73 HOH HOH . D 4 HOH A 74 1075 74 HOH HOH . D 4 HOH A 75 1076 75 HOH HOH . D 4 HOH A 76 1077 76 HOH HOH . D 4 HOH A 77 1078 77 HOH HOH . D 4 HOH A 78 1079 78 HOH HOH . D 4 HOH A 79 1080 79 HOH HOH . D 4 HOH A 80 1081 80 HOH HOH . D 4 HOH A 81 1082 81 HOH HOH . D 4 HOH A 82 1083 82 HOH HOH . D 4 HOH A 83 1084 83 HOH HOH . D 4 HOH A 84 1085 84 HOH HOH . D 4 HOH A 85 1086 85 HOH HOH . D 4 HOH A 86 1087 86 HOH HOH . D 4 HOH A 87 1088 87 HOH HOH . D 4 HOH A 88 1089 88 HOH HOH . D 4 HOH A 89 1090 89 HOH HOH . D 4 HOH A 90 1091 90 HOH HOH . D 4 HOH A 91 1092 91 HOH HOH . D 4 HOH A 92 1093 92 HOH HOH . D 4 HOH A 93 1094 93 HOH HOH . D 4 HOH A 94 1096 95 HOH HOH . D 4 HOH A 95 1097 96 HOH HOH . D 4 HOH A 96 1098 97 HOH HOH . D 4 HOH A 97 1099 98 HOH HOH . D 4 HOH A 98 1100 99 HOH HOH . D 4 HOH A 99 1101 100 HOH HOH . D 4 HOH A 100 1102 101 HOH HOH . D 4 HOH A 101 1103 102 HOH HOH . D 4 HOH A 102 1104 103 HOH HOH . D 4 HOH A 103 1105 104 HOH HOH . D 4 HOH A 104 1106 105 HOH HOH . D 4 HOH A 105 1107 106 HOH HOH . D 4 HOH A 106 1108 107 HOH HOH . D 4 HOH A 107 1109 108 HOH HOH . D 4 HOH A 108 1110 109 HOH HOH . D 4 HOH A 109 1111 110 HOH HOH . D 4 HOH A 110 1112 111 HOH HOH . D 4 HOH A 111 1113 112 HOH HOH . D 4 HOH A 112 1114 113 HOH HOH . D 4 HOH A 113 1115 114 HOH HOH . D 4 HOH A 114 1116 115 HOH HOH . D 4 HOH A 115 1117 116 HOH HOH . D 4 HOH A 116 1118 117 HOH HOH . D 4 HOH A 117 1119 118 HOH HOH . D 4 HOH A 118 1120 119 HOH HOH . D 4 HOH A 119 1121 120 HOH HOH . D 4 HOH A 120 1122 121 HOH HOH . D 4 HOH A 121 1123 122 HOH HOH . D 4 HOH A 122 1124 123 HOH HOH . D 4 HOH A 123 1125 124 HOH HOH . D 4 HOH A 124 1126 125 HOH HOH . D 4 HOH A 125 1127 126 HOH HOH . D 4 HOH A 126 1128 127 HOH HOH . D 4 HOH A 127 1129 128 HOH HOH . D 4 HOH A 128 1130 129 HOH HOH . D 4 HOH A 129 1131 130 HOH HOH . D 4 HOH A 130 1132 131 HOH HOH . D 4 HOH A 131 1133 132 HOH HOH . D 4 HOH A 132 1134 133 HOH HOH . D 4 HOH A 133 1135 134 HOH HOH . D 4 HOH A 134 1136 135 HOH HOH . D 4 HOH A 135 1137 136 HOH HOH . D 4 HOH A 136 1138 137 HOH HOH . D 4 HOH A 137 1139 138 HOH HOH . D 4 HOH A 138 1140 139 HOH HOH . D 4 HOH A 139 1141 140 HOH HOH . D 4 HOH A 140 1142 141 HOH HOH . D 4 HOH A 141 1143 142 HOH HOH . D 4 HOH A 142 1144 143 HOH HOH . D 4 HOH A 143 1145 144 HOH HOH . D 4 HOH A 144 1146 145 HOH HOH . D 4 HOH A 145 1147 146 HOH HOH . D 4 HOH A 146 1148 147 HOH HOH . D 4 HOH A 147 1149 148 HOH HOH . D 4 HOH A 148 1150 149 HOH HOH . D 4 HOH A 149 1151 150 HOH HOH . D 4 HOH A 150 1152 151 HOH HOH . D 4 HOH A 151 1153 152 HOH HOH . D 4 HOH A 152 1154 153 HOH HOH . D 4 HOH A 153 1155 154 HOH HOH . D 4 HOH A 154 1156 155 HOH HOH . D 4 HOH A 155 1157 156 HOH HOH . D 4 HOH A 156 1158 157 HOH HOH . D 4 HOH A 157 1159 158 HOH HOH . D 4 HOH A 158 1160 159 HOH HOH . D 4 HOH A 159 1161 160 HOH HOH . D 4 HOH A 160 1162 161 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PDN . . . C 3 24.347 64.199 22.95 1 29.84 ? C1 PDN 501 A 1 HETATM 2 C C2 PDN . . . C 3 24.547 65.647 22.881 1 34.24 ? C2 PDN 501 A 1 HETATM 3 C C3 PDN . . . C 3 24.03 66.318 21.865 1 34.57 ? C3 PDN 501 A 1 HETATM 4 C C4 PDN . . . C 3 23.207 65.747 21.021 1 33.42 ? C4 PDN 501 A 1 HETATM 5 C C5 PDN . . . C 3 22.783 64.508 21.032 1 31.33 ? C5 PDN 501 A 1 HETATM 6 C C6 PDN . . . C 3 21.941 64.022 20.103 1 29.21 ? C6 PDN 501 A 1 HETATM 7 C C7 PDN . . . C 3 22.305 62.695 19.505 1 27.87 ? C7 PDN 501 A 1 HETATM 8 C C8 PDN . . . C 3 22.782 61.681 20.541 1 26.64 ? C8 PDN 501 A 1 HETATM 9 C C9 PDN . . . C 3 23.744 62.28 21.531 1 27.1 ? C9 PDN 501 A 1 HETATM 10 C C10 PDN . . . C 3 23.278 63.602 22.126 1 29.59 ? C10 PDN 501 A 1 HETATM 11 C C11 PDN . . . C 3 24.25 61.136 22.514 1 26.48 ? C11 PDN 501 A 1 HETATM 12 C C12 PDN . . . C 3 24.793 59.912 21.91 1 25.02 ? C12 PDN 501 A 1 HETATM 13 C C13 PDN . . . C 3 23.757 59.301 21.1 1 25.62 ? C13 PDN 501 A 1 HETATM 14 C C14 PDN . . . C 3 23.286 60.272 20.1 1 26.36 ? C14 PDN 501 A 1 HETATM 15 C C15 PDN . . . C 3 22.52 59.43 19.141 1 24.61 ? C15 PDN 501 A 1 HETATM 16 C C16 PDN . . . C 3 23.151 58.108 19.193 1 25.44 ? C16 PDN 501 A 1 HETATM 17 C C17 PDN . . . C 3 24.176 58.107 20.264 1 25.84 ? C17 PDN 501 A 1 HETATM 18 C C18 PDN . . . C 3 22.563 58.962 22.024 1 26.86 ? C18 PDN 501 A 1 HETATM 19 C C19 PDN . . . C 3 22.174 63.51 23.136 1 28.77 ? C19 PDN 501 A 1 HETATM 20 C C20 PDN . . . C 3 24.5 56.846 21.093 1 22.97 ? C20 PDN 501 A 1 HETATM 21 C C21 PDN . . . C 3 23.496 56.049 21.891 1 26.02 ? C21 PDN 501 A 1 HETATM 22 O O1 PDN . . . C 3 24.359 67.453 21.772 1 35.68 ? O1 PDN 501 A 1 HETATM 23 O O2 PDN . . . C 3 24.3 61.184 23.791 1 26.88 ? O2 PDN 501 A 1 HETATM 24 O O3 PDN . . . C 3 25.269 58.341 19.427 1 26.05 ? O3 PDN 501 A 1 HETATM 25 O O4 PDN . . . C 3 25.565 56.532 21.113 1 19.8 ? O4 PDN 501 A 1 HETATM 26 O O5 PDN . . . C 3 24.16 54.895 22.387 1 24.35 ? O5 PDN 501 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #