data_3EBE # _model_server_result.job_id lGGqrEB-i4i3lHWs9nZz-A _model_server_result.datetime_utc '2025-02-20 14:43:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ebe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":502}' # _entry.id 3EBE # _exptl.entry_id 3EBE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.79 _cell.angle_gamma 90 _cell.entry_id 3EBE _cell.length_a 54.565 _cell.length_b 94.414 _cell.length_c 69.775 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EBE _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,G 1 1 B,E,H 2 1 C,F,I 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 154 A CYS 381 1_555 D ZN ZN . A ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc2 A SG CYS 164 A CYS 391 1_555 D ZN ZN . A ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc3 A SG CYS 176 A CYS 403 1_555 D ZN ZN . A ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc4 A ND1 HIS 179 A HIS 406 1_555 D ZN ZN . A ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? metalc ? metalc5 B SG CYS 154 B CYS 381 1_555 E ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc6 B SG CYS 164 B CYS 391 1_555 E ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc7 B SG CYS 176 B CYS 403 1_555 E ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc8 B ND1 HIS 179 B HIS 406 1_555 E ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc9 C SG CYS 154 C CYS 381 1_555 F ZN ZN . C ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc10 C SG CYS 164 C CYS 391 1_555 F ZN ZN . C ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc11 C SG CYS 176 C CYS 403 1_555 F ZN ZN . C ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc12 C ND1 HIS 179 C HIS 406 1_555 F ZN ZN . C ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3EBE _atom_sites.fract_transf_matrix[1][1] 0.018327 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007701 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010592 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015546 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 ZN A 1 500 500 ZN ZN . E 2 ZN B 1 501 501 ZN ZN . F 2 ZN C 1 502 502 ZN ZN . G 3 HOH A 1 6 6 HOH HOH . G 3 HOH A 2 13 13 HOH HOH . G 3 HOH A 3 15 15 HOH HOH . G 3 HOH A 4 18 18 HOH HOH . G 3 HOH A 5 19 19 HOH HOH . G 3 HOH A 6 20 20 HOH HOH . G 3 HOH A 7 21 21 HOH HOH . G 3 HOH A 8 23 23 HOH HOH . G 3 HOH A 9 25 25 HOH HOH . G 3 HOH A 10 26 26 HOH HOH . G 3 HOH A 11 27 27 HOH HOH . G 3 HOH A 12 28 28 HOH HOH . G 3 HOH A 13 29 29 HOH HOH . G 3 HOH A 14 30 30 HOH HOH . G 3 HOH A 15 32 32 HOH HOH . G 3 HOH A 16 34 34 HOH HOH . G 3 HOH A 17 35 35 HOH HOH . G 3 HOH A 18 37 37 HOH HOH . G 3 HOH A 19 43 43 HOH HOH . G 3 HOH A 20 45 45 HOH HOH . G 3 HOH A 21 54 54 HOH HOH . G 3 HOH A 22 55 55 HOH HOH . G 3 HOH A 23 56 56 HOH HOH . G 3 HOH A 24 59 59 HOH HOH . G 3 HOH A 25 60 60 HOH HOH . G 3 HOH A 26 64 64 HOH HOH . G 3 HOH A 27 70 70 HOH HOH . G 3 HOH A 28 71 71 HOH HOH . G 3 HOH A 29 75 75 HOH HOH . G 3 HOH A 30 84 84 HOH HOH . G 3 HOH A 31 87 87 HOH HOH . G 3 HOH A 32 93 93 HOH HOH . G 3 HOH A 33 99 99 HOH HOH . G 3 HOH A 34 100 100 HOH HOH . G 3 HOH A 35 106 106 HOH HOH . G 3 HOH A 36 108 108 HOH HOH . G 3 HOH A 37 109 109 HOH HOH . G 3 HOH A 38 110 110 HOH HOH . G 3 HOH A 39 123 123 HOH HOH . G 3 HOH A 40 126 126 HOH HOH . G 3 HOH A 41 133 133 HOH HOH . G 3 HOH A 42 136 136 HOH HOH . G 3 HOH A 43 137 137 HOH HOH . G 3 HOH A 44 140 140 HOH HOH . G 3 HOH A 45 145 145 HOH HOH . G 3 HOH A 46 146 146 HOH HOH . G 3 HOH A 47 147 147 HOH HOH . G 3 HOH A 48 148 148 HOH HOH . G 3 HOH A 49 154 154 HOH HOH . G 3 HOH A 50 155 155 HOH HOH . G 3 HOH A 51 156 156 HOH HOH . G 3 HOH A 52 157 157 HOH HOH . G 3 HOH A 53 158 158 HOH HOH . G 3 HOH A 54 159 159 HOH HOH . G 3 HOH A 55 160 160 HOH HOH . G 3 HOH A 56 162 162 HOH HOH . G 3 HOH A 57 164 164 HOH HOH . G 3 HOH A 58 165 165 HOH HOH . H 3 HOH B 1 5 5 HOH HOH . H 3 HOH B 2 8 8 HOH HOH . H 3 HOH B 3 10 10 HOH HOH . H 3 HOH B 4 11 11 HOH HOH . H 3 HOH B 5 12 12 HOH HOH . H 3 HOH B 6 14 14 HOH HOH . H 3 HOH B 7 16 16 HOH HOH . H 3 HOH B 8 31 31 HOH HOH . H 3 HOH B 9 36 36 HOH HOH . H 3 HOH B 10 38 38 HOH HOH . H 3 HOH B 11 40 40 HOH HOH . H 3 HOH B 12 41 41 HOH HOH . H 3 HOH B 13 42 42 HOH HOH . H 3 HOH B 14 46 46 HOH HOH . H 3 HOH B 15 61 61 HOH HOH . H 3 HOH B 16 74 74 HOH HOH . H 3 HOH B 17 76 76 HOH HOH . H 3 HOH B 18 82 82 HOH HOH . H 3 HOH B 19 88 88 HOH HOH . H 3 HOH B 20 89 89 HOH HOH . H 3 HOH B 21 91 91 HOH HOH . H 3 HOH B 22 94 94 HOH HOH . H 3 HOH B 23 111 111 HOH HOH . H 3 HOH B 24 112 112 HOH HOH . H 3 HOH B 25 113 113 HOH HOH . H 3 HOH B 26 114 114 HOH HOH . H 3 HOH B 27 115 115 HOH HOH . H 3 HOH B 28 116 116 HOH HOH . H 3 HOH B 29 119 119 HOH HOH . H 3 HOH B 30 128 128 HOH HOH . H 3 HOH B 31 132 132 HOH HOH . H 3 HOH B 32 134 134 HOH HOH . H 3 HOH B 33 135 135 HOH HOH . H 3 HOH B 34 141 141 HOH HOH . H 3 HOH B 35 142 142 HOH HOH . H 3 HOH B 36 143 143 HOH HOH . H 3 HOH B 37 144 144 HOH HOH . H 3 HOH B 38 150 150 HOH HOH . H 3 HOH B 39 151 151 HOH HOH . H 3 HOH B 40 152 152 HOH HOH . H 3 HOH B 41 153 153 HOH HOH . H 3 HOH B 42 167 167 HOH HOH . H 3 HOH B 43 168 168 HOH HOH . I 3 HOH C 1 1 1 HOH HOH . I 3 HOH C 2 2 2 HOH HOH . I 3 HOH C 3 3 3 HOH HOH . I 3 HOH C 4 4 4 HOH HOH . I 3 HOH C 5 7 7 HOH HOH . I 3 HOH C 6 9 9 HOH HOH . I 3 HOH C 7 17 17 HOH HOH . I 3 HOH C 8 22 22 HOH HOH . I 3 HOH C 9 24 24 HOH HOH . I 3 HOH C 10 33 33 HOH HOH . I 3 HOH C 11 39 39 HOH HOH . I 3 HOH C 12 44 44 HOH HOH . I 3 HOH C 13 48 48 HOH HOH . I 3 HOH C 14 49 49 HOH HOH . I 3 HOH C 15 50 50 HOH HOH . I 3 HOH C 16 51 51 HOH HOH . I 3 HOH C 17 57 57 HOH HOH . I 3 HOH C 18 58 58 HOH HOH . I 3 HOH C 19 68 68 HOH HOH . I 3 HOH C 20 72 72 HOH HOH . I 3 HOH C 21 73 73 HOH HOH . I 3 HOH C 22 78 78 HOH HOH . I 3 HOH C 23 79 79 HOH HOH . I 3 HOH C 24 90 90 HOH HOH . I 3 HOH C 25 92 92 HOH HOH . I 3 HOH C 26 95 95 HOH HOH . I 3 HOH C 27 96 96 HOH HOH . I 3 HOH C 28 97 97 HOH HOH . I 3 HOH C 29 98 98 HOH HOH . I 3 HOH C 30 101 101 HOH HOH . I 3 HOH C 31 102 102 HOH HOH . I 3 HOH C 32 103 103 HOH HOH . I 3 HOH C 33 104 104 HOH HOH . I 3 HOH C 34 105 105 HOH HOH . I 3 HOH C 35 120 120 HOH HOH . I 3 HOH C 36 121 121 HOH HOH . I 3 HOH C 37 122 122 HOH HOH . I 3 HOH C 38 124 124 HOH HOH . I 3 HOH C 39 125 125 HOH HOH . I 3 HOH C 40 127 127 HOH HOH . I 3 HOH C 41 129 129 HOH HOH . I 3 HOH C 42 130 130 HOH HOH . I 3 HOH C 43 138 138 HOH HOH . I 3 HOH C 44 139 139 HOH HOH . I 3 HOH C 45 149 149 HOH HOH . I 3 HOH C 46 161 161 HOH HOH . I 3 HOH C 47 163 163 HOH HOH . I 3 HOH C 48 166 166 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 2 _atom_site.Cartn_x -7.487 _atom_site.Cartn_y -20.288 _atom_site.Cartn_z 15.896 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 50.85 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 502 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #