data_3EBJ
#
_model_server_result.job_id            uoKWdqbetmbyaI12aLEKyQ 
_model_server_result.datetime_utc      '2024-11-25 15:52:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ebj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":999}' 
#
_entry.id    3EBJ 
#
_exptl.entry_id    3EBJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         96.55 
_cell.angle_beta          96.82 
_cell.angle_gamma         109.51 
_cell.entry_id            3EBJ 
_cell.length_a            51.049 
_cell.length_b            59.825 
_cell.length_c            67.165 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3EBJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,I 1 1 
B,F,J 2 1 
C,G,K 3 1 
D,H,L 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE2 GLU 83 A GLU 80 1_555 E MG MG . A MG 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? 
metalc ? metalc2 A OD1 ASP 111 A ASP 108 1_555 E MG MG . A MG 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? 
metalc ? metalc3 E MG MG . A MG 999 1_555 I O HOH . A HOH 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? 
metalc ? metalc4 E MG MG . A MG 999 1_555 I O HOH . A HOH 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? 
metalc ? metalc5 B OD1 ASP 111 B ASP 108 1_555 F MG MG . B MG 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? 
metalc ? metalc6 F MG MG . B MG 999 1_555 J O HOH . B HOH 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? 
metalc ? metalc7 F MG MG . B MG 999 1_555 J O HOH . B HOH 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? 
metalc ? metalc8 F MG MG . B MG 999 1_555 J O HOH . B HOH 1021 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? 
metalc ? metalc9 C OE1 GLU 83 C GLU 80 1_555 G MG MG . C MG 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? 
metalc ? metalc10 C OD1 ASP 111 C ASP 108 1_555 G MG MG . C MG 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? 
metalc ? metalc11 G MG MG . C MG 999 1_555 K O HOH . C HOH 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? 
metalc ? metalc12 G MG MG . C MG 999 1_555 K O HOH . C HOH 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? 
metalc ? metalc13 G MG MG . C MG 999 1_555 K O HOH . C HOH 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? 
metalc ? metalc14 H MG MG . D MG 999 1_555 L O HOH . D HOH 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? 
metalc ? metalc15 H MG MG . D MG 999 1_555 L O HOH . D HOH 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3EBJ 
_atom_sites.fract_transf_matrix[1][1]    0.019589 
_atom_sites.fract_transf_matrix[1][2]    0.006941 
_atom_sites.fract_transf_matrix[1][3]    0.003531 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017734 
_atom_sites.fract_transf_matrix[2][3]    0.002953 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015201 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 MG A 1 999 999 MG MG . 
F 2 MG B 1 999 999 MG MG . 
G 2 MG C 1 999 999 MG MG . 
H 2 MG D 1 999 999 MG MG . 
I 3 HOH A 1 1001 1001 HOH TIP . 
I 3 HOH A 2 1002 1002 HOH TIP . 
I 3 HOH A 3 1003 1003 HOH TIP . 
I 3 HOH A 4 1004 2 HOH TIP . 
I 3 HOH A 5 1005 6 HOH TIP . 
I 3 HOH A 6 1006 8 HOH TIP . 
I 3 HOH A 7 1007 14 HOH TIP . 
I 3 HOH A 8 1008 15 HOH TIP . 
I 3 HOH A 9 1009 21 HOH TIP . 
I 3 HOH A 10 1010 23 HOH TIP . 
I 3 HOH A 11 1011 25 HOH TIP . 
I 3 HOH A 12 1012 27 HOH TIP . 
I 3 HOH A 13 1013 34 HOH TIP . 
I 3 HOH A 14 1014 36 HOH TIP . 
I 3 HOH A 15 1015 37 HOH TIP . 
I 3 HOH A 16 1016 40 HOH TIP . 
I 3 HOH A 17 1017 47 HOH TIP . 
I 3 HOH A 18 1018 51 HOH TIP . 
I 3 HOH A 19 1019 52 HOH TIP . 
I 3 HOH A 20 1020 53 HOH TIP . 
I 3 HOH A 21 1021 54 HOH TIP . 
I 3 HOH A 22 1022 55 HOH TIP . 
I 3 HOH A 23 1023 56 HOH TIP . 
I 3 HOH A 24 1024 62 HOH TIP . 
I 3 HOH A 25 1025 63 HOH TIP . 
I 3 HOH A 26 1026 64 HOH TIP . 
I 3 HOH A 27 1027 65 HOH TIP . 
I 3 HOH A 28 1028 72 HOH TIP . 
I 3 HOH A 29 1029 77 HOH TIP . 
I 3 HOH A 30 1030 82 HOH TIP . 
I 3 HOH A 31 1031 84 HOH TIP . 
I 3 HOH A 32 1032 85 HOH TIP . 
I 3 HOH A 33 1033 86 HOH TIP . 
I 3 HOH A 34 1034 87 HOH TIP . 
I 3 HOH A 35 1035 90 HOH TIP . 
I 3 HOH A 36 1036 95 HOH TIP . 
I 3 HOH A 37 1037 100 HOH TIP . 
I 3 HOH A 38 1038 102 HOH TIP . 
I 3 HOH A 39 1039 103 HOH TIP . 
I 3 HOH A 40 1040 104 HOH TIP . 
J 3 HOH B 1 1001 1001 HOH TIP . 
J 3 HOH B 2 1002 1002 HOH TIP . 
J 3 HOH B 3 1003 1003 HOH TIP . 
J 3 HOH B 4 1004 1 HOH TIP . 
J 3 HOH B 5 1005 4 HOH TIP . 
J 3 HOH B 6 1006 9 HOH TIP . 
J 3 HOH B 7 1007 10 HOH TIP . 
J 3 HOH B 8 1008 13 HOH TIP . 
J 3 HOH B 9 1009 16 HOH TIP . 
J 3 HOH B 10 1010 18 HOH TIP . 
J 3 HOH B 11 1011 19 HOH TIP . 
J 3 HOH B 12 1012 22 HOH TIP . 
J 3 HOH B 13 1013 26 HOH TIP . 
J 3 HOH B 14 1014 31 HOH TIP . 
J 3 HOH B 15 1015 38 HOH TIP . 
J 3 HOH B 16 1016 44 HOH TIP . 
J 3 HOH B 17 1017 59 HOH TIP . 
J 3 HOH B 18 1018 60 HOH TIP . 
J 3 HOH B 19 1019 66 HOH TIP . 
J 3 HOH B 20 1020 68 HOH TIP . 
J 3 HOH B 21 1021 75 HOH TIP . 
J 3 HOH B 22 1022 76 HOH TIP . 
J 3 HOH B 23 1023 88 HOH TIP . 
J 3 HOH B 24 1024 89 HOH TIP . 
J 3 HOH B 25 1025 91 HOH TIP . 
J 3 HOH B 26 1026 92 HOH TIP . 
J 3 HOH B 27 1027 98 HOH TIP . 
J 3 HOH B 28 1028 99 HOH TIP . 
K 3 HOH C 1 1001 1001 HOH TIP . 
K 3 HOH C 2 1002 1002 HOH TIP . 
K 3 HOH C 3 1003 1003 HOH TIP . 
K 3 HOH C 4 1004 3 HOH TIP . 
K 3 HOH C 5 1005 11 HOH TIP . 
K 3 HOH C 6 1006 12 HOH TIP . 
K 3 HOH C 7 1007 17 HOH TIP . 
K 3 HOH C 8 1008 20 HOH TIP . 
K 3 HOH C 9 1009 24 HOH TIP . 
K 3 HOH C 10 1010 29 HOH TIP . 
K 3 HOH C 11 1011 33 HOH TIP . 
K 3 HOH C 12 1012 35 HOH TIP . 
K 3 HOH C 13 1013 39 HOH TIP . 
K 3 HOH C 14 1014 43 HOH TIP . 
K 3 HOH C 15 1015 57 HOH TIP . 
K 3 HOH C 16 1016 58 HOH TIP . 
K 3 HOH C 17 1017 61 HOH TIP . 
K 3 HOH C 18 1018 71 HOH TIP . 
K 3 HOH C 19 1019 74 HOH TIP . 
K 3 HOH C 20 1020 81 HOH TIP . 
K 3 HOH C 21 1021 83 HOH TIP . 
K 3 HOH C 22 1022 93 HOH TIP . 
L 3 HOH D 1 1001 1001 HOH TIP . 
L 3 HOH D 2 1002 1002 HOH TIP . 
L 3 HOH D 3 1003 1003 HOH TIP . 
L 3 HOH D 4 1004 5 HOH TIP . 
L 3 HOH D 5 1005 7 HOH TIP . 
L 3 HOH D 6 1006 28 HOH TIP . 
L 3 HOH D 7 1007 30 HOH TIP . 
L 3 HOH D 8 1008 32 HOH TIP . 
L 3 HOH D 9 1009 41 HOH TIP . 
L 3 HOH D 10 1010 42 HOH TIP . 
L 3 HOH D 11 1011 46 HOH TIP . 
L 3 HOH D 12 1012 48 HOH TIP . 
L 3 HOH D 13 1013 49 HOH TIP . 
L 3 HOH D 14 1014 50 HOH TIP . 
L 3 HOH D 15 1015 67 HOH TIP . 
L 3 HOH D 16 1016 69 HOH TIP . 
L 3 HOH D 17 1017 70 HOH TIP . 
L 3 HOH D 18 1018 73 HOH TIP . 
L 3 HOH D 19 1019 78 HOH TIP . 
L 3 HOH D 20 1020 79 HOH TIP . 
L 3 HOH D 21 1021 80 HOH TIP . 
L 3 HOH D 22 1022 94 HOH TIP . 
L 3 HOH D 23 1023 96 HOH TIP . 
L 3 HOH D 24 1024 97 HOH TIP . 
L 3 HOH D 25 1025 101 HOH TIP . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         F 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               38.35 
_atom_site.Cartn_y               -21.881 
_atom_site.Cartn_z               -24.841 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        31.77 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           999 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           268 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#