data_3EBJ # _model_server_result.job_id UQgf54Po2F2LXSvtgGs7MA _model_server_result.datetime_utc '2024-12-06 04:04:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ebj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":999}' # _entry.id 3EBJ # _exptl.entry_id 3EBJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 96.55 _cell.angle_beta 96.82 _cell.angle_gamma 109.51 _cell.entry_id 3EBJ _cell.length_a 51.049 _cell.length_b 59.825 _cell.length_c 67.165 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EBJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,I 1 1 B,F,J 2 1 C,G,K 3 1 D,H,L 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 83 A GLU 80 1_555 E MG MG . A MG 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? metalc ? metalc2 A OD1 ASP 111 A ASP 108 1_555 E MG MG . A MG 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? metalc ? metalc3 E MG MG . A MG 999 1_555 I O HOH . A HOH 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? metalc ? metalc4 E MG MG . A MG 999 1_555 I O HOH . A HOH 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc5 B OD1 ASP 111 B ASP 108 1_555 F MG MG . B MG 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc6 F MG MG . B MG 999 1_555 J O HOH . B HOH 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc7 F MG MG . B MG 999 1_555 J O HOH . B HOH 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc8 F MG MG . B MG 999 1_555 J O HOH . B HOH 1021 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc9 C OE1 GLU 83 C GLU 80 1_555 G MG MG . C MG 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc10 C OD1 ASP 111 C ASP 108 1_555 G MG MG . C MG 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc11 G MG MG . C MG 999 1_555 K O HOH . C HOH 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc12 G MG MG . C MG 999 1_555 K O HOH . C HOH 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc13 G MG MG . C MG 999 1_555 K O HOH . C HOH 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc14 H MG MG . D MG 999 1_555 L O HOH . D HOH 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc15 H MG MG . D MG 999 1_555 L O HOH . D HOH 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3EBJ _atom_sites.fract_transf_matrix[1][1] 0.019589 _atom_sites.fract_transf_matrix[1][2] 0.006941 _atom_sites.fract_transf_matrix[1][3] 0.003531 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017734 _atom_sites.fract_transf_matrix[2][3] 0.002953 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015201 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 MG A 1 999 999 MG MG . F 2 MG B 1 999 999 MG MG . G 2 MG C 1 999 999 MG MG . H 2 MG D 1 999 999 MG MG . I 3 HOH A 1 1001 1001 HOH TIP . I 3 HOH A 2 1002 1002 HOH TIP . I 3 HOH A 3 1003 1003 HOH TIP . I 3 HOH A 4 1004 2 HOH TIP . I 3 HOH A 5 1005 6 HOH TIP . I 3 HOH A 6 1006 8 HOH TIP . I 3 HOH A 7 1007 14 HOH TIP . I 3 HOH A 8 1008 15 HOH TIP . I 3 HOH A 9 1009 21 HOH TIP . I 3 HOH A 10 1010 23 HOH TIP . I 3 HOH A 11 1011 25 HOH TIP . I 3 HOH A 12 1012 27 HOH TIP . I 3 HOH A 13 1013 34 HOH TIP . I 3 HOH A 14 1014 36 HOH TIP . I 3 HOH A 15 1015 37 HOH TIP . I 3 HOH A 16 1016 40 HOH TIP . I 3 HOH A 17 1017 47 HOH TIP . I 3 HOH A 18 1018 51 HOH TIP . I 3 HOH A 19 1019 52 HOH TIP . I 3 HOH A 20 1020 53 HOH TIP . I 3 HOH A 21 1021 54 HOH TIP . I 3 HOH A 22 1022 55 HOH TIP . I 3 HOH A 23 1023 56 HOH TIP . I 3 HOH A 24 1024 62 HOH TIP . I 3 HOH A 25 1025 63 HOH TIP . I 3 HOH A 26 1026 64 HOH TIP . I 3 HOH A 27 1027 65 HOH TIP . I 3 HOH A 28 1028 72 HOH TIP . I 3 HOH A 29 1029 77 HOH TIP . I 3 HOH A 30 1030 82 HOH TIP . I 3 HOH A 31 1031 84 HOH TIP . I 3 HOH A 32 1032 85 HOH TIP . I 3 HOH A 33 1033 86 HOH TIP . I 3 HOH A 34 1034 87 HOH TIP . I 3 HOH A 35 1035 90 HOH TIP . I 3 HOH A 36 1036 95 HOH TIP . I 3 HOH A 37 1037 100 HOH TIP . I 3 HOH A 38 1038 102 HOH TIP . I 3 HOH A 39 1039 103 HOH TIP . I 3 HOH A 40 1040 104 HOH TIP . J 3 HOH B 1 1001 1001 HOH TIP . J 3 HOH B 2 1002 1002 HOH TIP . J 3 HOH B 3 1003 1003 HOH TIP . J 3 HOH B 4 1004 1 HOH TIP . J 3 HOH B 5 1005 4 HOH TIP . J 3 HOH B 6 1006 9 HOH TIP . J 3 HOH B 7 1007 10 HOH TIP . J 3 HOH B 8 1008 13 HOH TIP . J 3 HOH B 9 1009 16 HOH TIP . J 3 HOH B 10 1010 18 HOH TIP . J 3 HOH B 11 1011 19 HOH TIP . J 3 HOH B 12 1012 22 HOH TIP . J 3 HOH B 13 1013 26 HOH TIP . J 3 HOH B 14 1014 31 HOH TIP . J 3 HOH B 15 1015 38 HOH TIP . J 3 HOH B 16 1016 44 HOH TIP . J 3 HOH B 17 1017 59 HOH TIP . J 3 HOH B 18 1018 60 HOH TIP . J 3 HOH B 19 1019 66 HOH TIP . J 3 HOH B 20 1020 68 HOH TIP . J 3 HOH B 21 1021 75 HOH TIP . J 3 HOH B 22 1022 76 HOH TIP . J 3 HOH B 23 1023 88 HOH TIP . J 3 HOH B 24 1024 89 HOH TIP . J 3 HOH B 25 1025 91 HOH TIP . J 3 HOH B 26 1026 92 HOH TIP . J 3 HOH B 27 1027 98 HOH TIP . J 3 HOH B 28 1028 99 HOH TIP . K 3 HOH C 1 1001 1001 HOH TIP . K 3 HOH C 2 1002 1002 HOH TIP . K 3 HOH C 3 1003 1003 HOH TIP . K 3 HOH C 4 1004 3 HOH TIP . K 3 HOH C 5 1005 11 HOH TIP . K 3 HOH C 6 1006 12 HOH TIP . K 3 HOH C 7 1007 17 HOH TIP . K 3 HOH C 8 1008 20 HOH TIP . K 3 HOH C 9 1009 24 HOH TIP . K 3 HOH C 10 1010 29 HOH TIP . K 3 HOH C 11 1011 33 HOH TIP . K 3 HOH C 12 1012 35 HOH TIP . K 3 HOH C 13 1013 39 HOH TIP . K 3 HOH C 14 1014 43 HOH TIP . K 3 HOH C 15 1015 57 HOH TIP . K 3 HOH C 16 1016 58 HOH TIP . K 3 HOH C 17 1017 61 HOH TIP . K 3 HOH C 18 1018 71 HOH TIP . K 3 HOH C 19 1019 74 HOH TIP . K 3 HOH C 20 1020 81 HOH TIP . K 3 HOH C 21 1021 83 HOH TIP . K 3 HOH C 22 1022 93 HOH TIP . L 3 HOH D 1 1001 1001 HOH TIP . L 3 HOH D 2 1002 1002 HOH TIP . L 3 HOH D 3 1003 1003 HOH TIP . L 3 HOH D 4 1004 5 HOH TIP . L 3 HOH D 5 1005 7 HOH TIP . L 3 HOH D 6 1006 28 HOH TIP . L 3 HOH D 7 1007 30 HOH TIP . L 3 HOH D 8 1008 32 HOH TIP . L 3 HOH D 9 1009 41 HOH TIP . L 3 HOH D 10 1010 42 HOH TIP . L 3 HOH D 11 1011 46 HOH TIP . L 3 HOH D 12 1012 48 HOH TIP . L 3 HOH D 13 1013 49 HOH TIP . L 3 HOH D 14 1014 50 HOH TIP . L 3 HOH D 15 1015 67 HOH TIP . L 3 HOH D 16 1016 69 HOH TIP . L 3 HOH D 17 1017 70 HOH TIP . L 3 HOH D 18 1018 73 HOH TIP . L 3 HOH D 19 1019 78 HOH TIP . L 3 HOH D 20 1020 79 HOH TIP . L 3 HOH D 21 1021 80 HOH TIP . L 3 HOH D 22 1022 94 HOH TIP . L 3 HOH D 23 1023 96 HOH TIP . L 3 HOH D 24 1024 97 HOH TIP . L 3 HOH D 25 1025 101 HOH TIP . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 2 _atom_site.Cartn_x 23.51 _atom_site.Cartn_y -15.767 _atom_site.Cartn_z -7.727 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 45.39 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 999 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 342 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #