data_3EBU # _model_server_result.job_id jUl9oRVF5buCPxAix884Xg _model_server_result.datetime_utc '2024-11-26 17:03:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ebu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":314}' # _entry.id 3EBU # _exptl.entry_id 3EBU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3EBU _cell.length_a 95.616 _cell.length_b 95.616 _cell.length_c 81.616 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EBU _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 x-y,-y,-z+2/3 1 0 0 0 -1 0 0 0 -1 0 0 54.410667 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ARG 42 A ARG 42 1_555 A N CME 43 A CME 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale2 A C CME 43 A CME 43 1_555 A N GLY 44 A GLY 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 A C MET 179 A MET 179 1_555 A N CME 180 A CME 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale4 A C CME 180 A CME 180 1_555 A N ALA 181 A ALA 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale5 A C PRO 194 A PRO 194 1_555 A N CME 195 A CME 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale6 A C CME 195 A CME 195 1_555 A N HIS 196 A HIS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 104 n n C1 C2 EDO sing 105 n n C1 H11 EDO sing 106 n n C1 H12 EDO sing 107 n n O1 HO1 EDO sing 108 n n C2 O2 EDO sing 109 n n C2 H21 EDO sing 110 n n C2 H22 EDO sing 111 n n O2 HO2 EDO sing 112 n n # _atom_sites.entry_id 3EBU _atom_sites.fract_transf_matrix[1][1] 0.010459 _atom_sites.fract_transf_matrix[1][2] 0.006038 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012076 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012252 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 315 315 SO4 SO4 . C 2 SO4 A 1 316 316 SO4 SO4 . D 2 SO4 A 1 317 317 SO4 SO4 . E 3 EDO A 1 314 314 EDO EDO . F 4 HOH A 1 318 1 HOH HOH . F 4 HOH A 2 319 2 HOH HOH . F 4 HOH A 3 320 3 HOH HOH . F 4 HOH A 4 321 4 HOH HOH . F 4 HOH A 5 322 5 HOH HOH . F 4 HOH A 6 323 6 HOH HOH . F 4 HOH A 7 324 7 HOH HOH . F 4 HOH A 8 325 8 HOH HOH . F 4 HOH A 9 326 9 HOH HOH . F 4 HOH A 10 327 10 HOH HOH . F 4 HOH A 11 328 11 HOH HOH . F 4 HOH A 12 329 12 HOH HOH . F 4 HOH A 13 330 13 HOH HOH . F 4 HOH A 14 331 14 HOH HOH . F 4 HOH A 15 332 15 HOH HOH . F 4 HOH A 16 333 16 HOH HOH . F 4 HOH A 17 334 17 HOH HOH . F 4 HOH A 18 335 18 HOH HOH . F 4 HOH A 19 336 19 HOH HOH . F 4 HOH A 20 337 20 HOH HOH . F 4 HOH A 21 338 21 HOH HOH . F 4 HOH A 22 339 22 HOH HOH . F 4 HOH A 23 340 23 HOH HOH . F 4 HOH A 24 341 24 HOH HOH . F 4 HOH A 25 342 25 HOH HOH . F 4 HOH A 26 343 26 HOH HOH . F 4 HOH A 27 344 27 HOH HOH . F 4 HOH A 28 345 28 HOH HOH . F 4 HOH A 29 346 29 HOH HOH . F 4 HOH A 30 347 30 HOH HOH . F 4 HOH A 31 348 31 HOH HOH . F 4 HOH A 32 349 32 HOH HOH . F 4 HOH A 33 350 33 HOH HOH . F 4 HOH A 34 351 34 HOH HOH . F 4 HOH A 35 352 35 HOH HOH . F 4 HOH A 36 353 36 HOH HOH . F 4 HOH A 37 354 37 HOH HOH . F 4 HOH A 38 355 38 HOH HOH . F 4 HOH A 39 356 39 HOH HOH . F 4 HOH A 40 357 41 HOH HOH . F 4 HOH A 41 358 42 HOH HOH . F 4 HOH A 42 359 44 HOH HOH . F 4 HOH A 43 360 45 HOH HOH . F 4 HOH A 44 361 46 HOH HOH . F 4 HOH A 45 362 47 HOH HOH . F 4 HOH A 46 363 48 HOH HOH . F 4 HOH A 47 364 49 HOH HOH . F 4 HOH A 48 365 52 HOH HOH . F 4 HOH A 49 366 53 HOH HOH . F 4 HOH A 50 367 55 HOH HOH . F 4 HOH A 51 368 56 HOH HOH . F 4 HOH A 52 369 57 HOH HOH . F 4 HOH A 53 370 58 HOH HOH . F 4 HOH A 54 371 59 HOH HOH . F 4 HOH A 55 372 63 HOH HOH . F 4 HOH A 56 373 64 HOH HOH . F 4 HOH A 57 374 65 HOH HOH . F 4 HOH A 58 375 66 HOH HOH . F 4 HOH A 59 376 67 HOH HOH . F 4 HOH A 60 377 68 HOH HOH . F 4 HOH A 61 378 70 HOH HOH . F 4 HOH A 62 379 72 HOH HOH . F 4 HOH A 63 380 73 HOH HOH . F 4 HOH A 64 381 74 HOH HOH . F 4 HOH A 65 382 75 HOH HOH . F 4 HOH A 66 383 76 HOH HOH . F 4 HOH A 67 384 77 HOH HOH . F 4 HOH A 68 385 78 HOH HOH . F 4 HOH A 69 386 79 HOH HOH . F 4 HOH A 70 387 80 HOH HOH . F 4 HOH A 71 388 81 HOH HOH . F 4 HOH A 72 389 82 HOH HOH . F 4 HOH A 73 390 83 HOH HOH . F 4 HOH A 74 391 84 HOH HOH . F 4 HOH A 75 392 85 HOH HOH . F 4 HOH A 76 393 86 HOH HOH . F 4 HOH A 77 394 87 HOH HOH . F 4 HOH A 78 395 89 HOH HOH . F 4 HOH A 79 396 90 HOH HOH . F 4 HOH A 80 397 91 HOH HOH . F 4 HOH A 81 398 92 HOH HOH . F 4 HOH A 82 399 93 HOH HOH . F 4 HOH A 83 400 94 HOH HOH . F 4 HOH A 84 401 95 HOH HOH . F 4 HOH A 85 402 96 HOH HOH . F 4 HOH A 86 403 97 HOH HOH . F 4 HOH A 87 404 98 HOH HOH . F 4 HOH A 88 405 99 HOH HOH . F 4 HOH A 89 406 100 HOH HOH . F 4 HOH A 90 407 101 HOH HOH . F 4 HOH A 91 408 102 HOH HOH . F 4 HOH A 92 409 103 HOH HOH . F 4 HOH A 93 410 104 HOH HOH . F 4 HOH A 94 411 106 HOH HOH . F 4 HOH A 95 412 107 HOH HOH . F 4 HOH A 96 413 108 HOH HOH . F 4 HOH A 97 414 109 HOH HOH . F 4 HOH A 98 415 110 HOH HOH . F 4 HOH A 99 416 111 HOH HOH . F 4 HOH A 100 417 112 HOH HOH . F 4 HOH A 101 418 113 HOH HOH . F 4 HOH A 102 419 114 HOH HOH . F 4 HOH A 103 420 115 HOH HOH . F 4 HOH A 104 421 116 HOH HOH . F 4 HOH A 105 422 117 HOH HOH . F 4 HOH A 106 423 118 HOH HOH . F 4 HOH A 107 424 119 HOH HOH . F 4 HOH A 108 425 120 HOH HOH . F 4 HOH A 109 426 121 HOH HOH . F 4 HOH A 110 427 122 HOH HOH . F 4 HOH A 111 428 123 HOH HOH . F 4 HOH A 112 429 124 HOH HOH . F 4 HOH A 113 430 125 HOH HOH . F 4 HOH A 114 431 126 HOH HOH . F 4 HOH A 115 432 127 HOH HOH . F 4 HOH A 116 433 128 HOH HOH . F 4 HOH A 117 434 129 HOH HOH . F 4 HOH A 118 435 130 HOH HOH . F 4 HOH A 119 436 131 HOH HOH . F 4 HOH A 120 437 132 HOH HOH . F 4 HOH A 121 438 133 HOH HOH . F 4 HOH A 122 439 134 HOH HOH . F 4 HOH A 123 440 137 HOH HOH . F 4 HOH A 124 441 138 HOH HOH . F 4 HOH A 125 442 139 HOH HOH . F 4 HOH A 126 443 140 HOH HOH . F 4 HOH A 127 444 141 HOH HOH . F 4 HOH A 128 445 142 HOH HOH . F 4 HOH A 129 446 143 HOH HOH . F 4 HOH A 130 447 144 HOH HOH . F 4 HOH A 131 448 145 HOH HOH . F 4 HOH A 132 449 146 HOH HOH . F 4 HOH A 133 450 148 HOH HOH . F 4 HOH A 134 451 149 HOH HOH . F 4 HOH A 135 452 150 HOH HOH . F 4 HOH A 136 453 155 HOH HOH . F 4 HOH A 137 454 156 HOH HOH . F 4 HOH A 138 455 157 HOH HOH . F 4 HOH A 139 456 158 HOH HOH . F 4 HOH A 140 457 162 HOH HOH . F 4 HOH A 141 458 163 HOH HOH . F 4 HOH A 142 459 164 HOH HOH . F 4 HOH A 143 460 165 HOH HOH . F 4 HOH A 144 461 167 HOH HOH . F 4 HOH A 145 462 168 HOH HOH . F 4 HOH A 146 463 169 HOH HOH . F 4 HOH A 147 464 170 HOH HOH . F 4 HOH A 148 465 171 HOH HOH . F 4 HOH A 149 466 176 HOH HOH . F 4 HOH A 150 467 177 HOH HOH . F 4 HOH A 151 468 178 HOH HOH . F 4 HOH A 152 469 179 HOH HOH . F 4 HOH A 153 470 180 HOH HOH . F 4 HOH A 154 471 181 HOH HOH . F 4 HOH A 155 472 182 HOH HOH . F 4 HOH A 156 473 183 HOH HOH . F 4 HOH A 157 474 184 HOH HOH . F 4 HOH A 158 475 185 HOH HOH . F 4 HOH A 159 476 186 HOH HOH . F 4 HOH A 160 477 187 HOH HOH . F 4 HOH A 161 478 188 HOH HOH . F 4 HOH A 162 479 189 HOH HOH . F 4 HOH A 163 480 192 HOH HOH . F 4 HOH A 164 481 193 HOH HOH . F 4 HOH A 165 482 194 HOH HOH . F 4 HOH A 166 483 195 HOH HOH . F 4 HOH A 167 484 196 HOH HOH . F 4 HOH A 168 485 197 HOH HOH . F 4 HOH A 169 486 198 HOH HOH . F 4 HOH A 170 487 199 HOH HOH . F 4 HOH A 171 488 201 HOH HOH . F 4 HOH A 172 489 202 HOH HOH . F 4 HOH A 173 490 203 HOH HOH . F 4 HOH A 174 491 204 HOH HOH . F 4 HOH A 175 492 205 HOH HOH . F 4 HOH A 176 493 206 HOH HOH . F 4 HOH A 177 494 207 HOH HOH . F 4 HOH A 178 495 209 HOH HOH . F 4 HOH A 179 496 210 HOH HOH . F 4 HOH A 180 497 211 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 3 38.914 -6.955 30.811 1 42.32 ? C1 EDO 314 A 1 HETATM 2 O O1 EDO . . . E 3 37.909 -5.947 30.85 1 41.71 ? O1 EDO 314 A 1 HETATM 3 C C2 EDO . . . E 3 38.716 -8.047 31.881 1 43.98 ? C2 EDO 314 A 1 HETATM 4 O O2 EDO . . . E 3 38.3 -7.524 33.162 1 45.42 ? O2 EDO 314 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #