data_3EBW # _model_server_result.job_id -JbUyCYaI6Cz8BbencU_fQ _model_server_result.datetime_utc '2024-10-25 04:16:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ebw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":5747}' # _entry.id 3EBW # _exptl.entry_id 3EBW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 354.436 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3EBW _cell.length_a 62.985 _cell.length_b 62.985 _cell.length_c 143.699 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EBW _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 PISA monomeric 1 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1 A,C 2 1 B,D 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4 A CYS 6 1_555 A SG CYS 111 A CYS 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf2 A SG CYS 39 A CYS 41 1_555 A SG CYS 160 A CYS 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf3 B SG CYS 4 B CYS 6 1_555 B SG CYS 111 B CYS 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf4 B SG CYS 39 B CYS 41 1_555 B SG CYS 160 B CYS 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? covale ? covale1 A C ASP 14 A ASP 16 1_555 A N MSE 15 A MSE 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 A C MSE 15 A MSE 17 1_555 A N THR 16 A THR 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale3 A C PHE 96 A PHE 98 1_555 A N MSE 97 A MSE 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale4 A C MSE 97 A MSE 99 1_555 A N VAL 98 A VAL 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale5 A C ASP 151 A ASP 153 1_555 A N MSE 152 A MSE 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 A C MSE 152 A MSE 154 1_555 A N GLU 153 A GLU 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale7 B C ASP 14 B ASP 16 1_555 B N MSE 15 B MSE 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale8 B C MSE 15 B MSE 17 1_555 B N THR 16 B THR 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale9 B C PHE 96 B PHE 98 1_555 B N MSE 97 B MSE 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale10 B C MSE 97 B MSE 99 1_555 B N VAL 98 B VAL 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale11 B C ASP 151 B ASP 153 1_555 B N MSE 152 B MSE 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale12 B C MSE 152 B MSE 154 1_555 B N GLU 153 B GLU 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C16 H34 O8' _chem_comp.formula_weight 354.436 _chem_comp.id PE4 _chem_comp.mon_nstd_flag . _chem_comp.name 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'POLYETHYLENE GLYCOL PEG4000' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 PE4 sing 235 n n O1 HO1 PE4 sing 236 n n C1 C2 PE4 sing 237 n n C1 H11 PE4 sing 238 n n C1 H12 PE4 sing 239 n n C2 O2 PE4 sing 240 n n C2 H21 PE4 sing 241 n n C2 H22 PE4 sing 242 n n O2 C3 PE4 sing 243 n n C3 C4 PE4 sing 244 n n C3 H31 PE4 sing 245 n n C3 H32 PE4 sing 246 n n C4 O3 PE4 sing 247 n n C4 H41 PE4 sing 248 n n C4 H42 PE4 sing 249 n n O3 C5 PE4 sing 250 n n C5 C6 PE4 sing 251 n n C5 H51 PE4 sing 252 n n C5 H52 PE4 sing 253 n n C6 O4 PE4 sing 254 n n C6 H61 PE4 sing 255 n n C6 H62 PE4 sing 256 n n O4 C7 PE4 sing 257 n n C7 C8 PE4 sing 258 n n C7 H71 PE4 sing 259 n n C7 H72 PE4 sing 260 n n C8 O5 PE4 sing 261 n n C8 H81 PE4 sing 262 n n C8 H82 PE4 sing 263 n n O5 C9 PE4 sing 264 n n C9 C10 PE4 sing 265 n n C9 H91 PE4 sing 266 n n C9 H92 PE4 sing 267 n n C10 O6 PE4 sing 268 n n C10 H101 PE4 sing 269 n n C10 H102 PE4 sing 270 n n O6 C11 PE4 sing 271 n n C11 C12 PE4 sing 272 n n C11 H111 PE4 sing 273 n n C11 H112 PE4 sing 274 n n C12 O7 PE4 sing 275 n n C12 H121 PE4 sing 276 n n C12 H122 PE4 sing 277 n n O7 C13 PE4 sing 278 n n C13 C14 PE4 sing 279 n n C13 H131 PE4 sing 280 n n C13 H132 PE4 sing 281 n n C14 O8 PE4 sing 282 n n C14 H141 PE4 sing 283 n n C14 H142 PE4 sing 284 n n O8 C15 PE4 sing 285 n n C15 C16 PE4 sing 286 n n C15 H151 PE4 sing 287 n n C15 H152 PE4 sing 288 n n C16 H161 PE4 sing 289 n n C16 H162 PE4 sing 290 n n C16 H163 PE4 sing 291 n n # _atom_sites.entry_id 3EBW _atom_sites.fract_transf_matrix[1][1] 0.015877 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015877 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006959 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PE4 A 1 5747 5747 PE4 PE4 . D 2 PE4 B 1 5747 5747 PE4 PE4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 PE4 . . . C 2 29.138 19.741 67.4 1 63.01 ? C2 PE4 5747 A 1 HETATM 2 O O2 PE4 . . . C 2 29.276 18.329 67.728 1 23.47 ? O2 PE4 5747 A 1 HETATM 3 C C3 PE4 . . . C 2 28.389 17.688 66.801 1 23.47 ? C3 PE4 5747 A 1 HETATM 4 C C4 PE4 . . . C 2 28.408 16.196 67.037 1 23.47 ? C4 PE4 5747 A 1 HETATM 5 O O3 PE4 . . . C 2 28.151 15.852 68.414 1 23.47 ? O3 PE4 5747 A 1 HETATM 6 C C5 PE4 . . . C 2 28.213 14.392 68.301 1 23.47 ? C5 PE4 5747 A 1 HETATM 7 C C6 PE4 . . . C 2 28.023 13.586 69.609 1 23.47 ? C6 PE4 5747 A 1 HETATM 8 O O4 PE4 . . . C 2 27.775 14.491 70.674 1 23.47 ? O4 PE4 5747 A 1 HETATM 9 C C7 PE4 . . . C 2 27.646 13.709 71.858 1 23.47 ? C7 PE4 5747 A 1 HETATM 10 C C8 PE4 . . . C 2 27.375 14.696 73.02 1 23.47 ? C8 PE4 5747 A 1 HETATM 11 O O5 PE4 . . . C 2 26.393 14.068 73.831 1 23.47 ? O5 PE4 5747 A 1 HETATM 12 C C9 PE4 . . . C 2 26.06 14.904 74.954 1 23.47 ? C9 PE4 5747 A 1 HETATM 13 C C10 PE4 . . . C 2 25.009 14.057 75.738 1 23.47 ? C10 PE4 5747 A 1 HETATM 14 O O6 PE4 . . . C 2 24.032 13.624 74.758 1 23.47 ? O6 PE4 5747 A 1 HETATM 15 C C11 PE4 . . . C 2 23.016 12.813 75.342 1 65.17 ? C11 PE4 5747 A 1 HETATM 16 C C12 PE4 . . . C 2 22.075 12.481 74.182 1 65.17 ? C12 PE4 5747 A 1 HETATM 17 O O7 PE4 . . . C 2 22.031 13.646 73.333 1 65.17 ? O7 PE4 5747 A 1 HETATM 18 C C13 PE4 . . . C 2 21.179 13.369 72.218 1 65.17 ? C13 PE4 5747 A 1 HETATM 19 C C14 PE4 . . . C 2 21.143 14.607 71.3 1 65.17 ? C14 PE4 5747 A 1 HETATM 20 O O8 PE4 . . . C 2 21.974 15.657 71.857 1 65.17 ? O8 PE4 5747 A 1 HETATM 21 C C15 PE4 . . . C 2 21.912 16.785 70.956 1 65.17 ? C15 PE4 5747 A 1 HETATM 22 C C16 PE4 . . . C 2 22.786 17.919 71.499 1 63.01 ? C16 PE4 5747 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 22 #