data_3EC6 # _model_server_result.job_id 6ckqZMgdoC-JTzSeOrZhZA _model_server_result.datetime_utc '2024-11-09 02:38:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ec6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":139}' # _entry.id 3EC6 # _exptl.entry_id 3EC6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 126.05 _cell.angle_gamma 90 _cell.entry_id 3EC6 _cell.length_a 65.123 _cell.length_b 48.898 _cell.length_c 51.066 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EC6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -30.051883 0 41.287052 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 2 A MSE 1 1_555 A N HIS 3 A HIS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale2 A C PHE 32 A PHE 31 1_555 A N MSE 33 A MSE 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale3 A C MSE 33 A MSE 32 1_555 A N MSE 34 A MSE 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale4 A C MSE 34 A MSE 33 1_555 A N PHE 35 A PHE 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 70 n n PA O2A FAD sing 71 n n PA O5B FAD sing 72 n n PA O3P FAD sing 73 n n O2A HOA2 FAD sing 74 n n O5B C5B FAD sing 75 n n C5B C4B FAD sing 76 n n C5B H51A FAD sing 77 n n C5B H52A FAD sing 78 n n C4B O4B FAD sing 79 n n C4B C3B FAD sing 80 n n C4B H4B FAD sing 81 n n O4B C1B FAD sing 82 n n C3B O3B FAD sing 83 n n C3B C2B FAD sing 84 n n C3B H3B FAD sing 85 n n O3B HO3A FAD sing 86 n n C2B O2B FAD sing 87 n n C2B C1B FAD sing 88 n n C2B H2B FAD sing 89 n n O2B HO2A FAD sing 90 n n C1B N9A FAD sing 91 n n C1B H1B FAD sing 92 n n N9A C8A FAD sing 93 n y N9A C4A FAD sing 94 n y C8A N7A FAD doub 95 n y C8A H8A FAD sing 96 n n N7A C5A FAD sing 97 n y C5A C6A FAD sing 98 n y C5A C4A FAD doub 99 n y C6A N6A FAD sing 100 n n C6A N1A FAD doub 101 n y N6A H61A FAD sing 102 n n N6A H62A FAD sing 103 n n N1A C2A FAD sing 104 n y C2A N3A FAD doub 105 n y C2A H2A FAD sing 106 n n N3A C4A FAD sing 107 n y N1 C2 FAD sing 108 n n N1 C10 FAD doub 109 n n C2 O2 FAD doub 110 n n C2 N3 FAD sing 111 n n N3 C4 FAD sing 112 n n N3 HN3 FAD sing 113 n n C4 O4 FAD doub 114 n n C4 C4X FAD sing 115 n n C4X N5 FAD doub 116 n n C4X C10 FAD sing 117 n n N5 C5X FAD sing 118 n n C5X C6 FAD doub 119 n y C5X C9A FAD sing 120 n y C6 C7 FAD sing 121 n y C6 H6 FAD sing 122 n n C7 C7M FAD sing 123 n n C7 C8 FAD doub 124 n y C7M HM71 FAD sing 125 n n C7M HM72 FAD sing 126 n n C7M HM73 FAD sing 127 n n C8 C8M FAD sing 128 n n C8 C9 FAD sing 129 n y C8M HM81 FAD sing 130 n n C8M HM82 FAD sing 131 n n C8M HM83 FAD sing 132 n n C9 C9A FAD doub 133 n y C9 H9 FAD sing 134 n n C9A N10 FAD sing 135 n n N10 C10 FAD sing 136 n n N10 C1' FAD sing 137 n n C1' C2' FAD sing 138 n n C1' "H1'1" FAD sing 139 n n C1' "H1'2" FAD sing 140 n n C2' O2' FAD sing 141 n n C2' C3' FAD sing 142 n n C2' H2' FAD sing 143 n n O2' HO2' FAD sing 144 n n C3' O3' FAD sing 145 n n C3' C4' FAD sing 146 n n C3' H3' FAD sing 147 n n O3' HO3' FAD sing 148 n n C4' O4' FAD sing 149 n n C4' C5' FAD sing 150 n n C4' H4' FAD sing 151 n n O4' HO4' FAD sing 152 n n C5' O5' FAD sing 153 n n C5' "H5'1" FAD sing 154 n n C5' "H5'2" FAD sing 155 n n O5' P FAD sing 156 n n P O1P FAD doub 157 n n P O2P FAD sing 158 n n P O3P FAD sing 159 n n O2P HOP2 FAD sing 160 n n # _atom_sites.entry_id 3EC6 _atom_sites.fract_transf_matrix[1][1] 0.015356 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.011178 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020451 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024221 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 139 1 FAD FAD . C 3 SO4 A 1 140 2 SO4 SO4 . D 4 HOH A 1 141 1 HOH HOH . D 4 HOH A 2 142 2 HOH HOH . D 4 HOH A 3 143 3 HOH HOH . D 4 HOH A 4 144 4 HOH HOH . D 4 HOH A 5 145 5 HOH HOH . D 4 HOH A 6 146 6 HOH HOH . D 4 HOH A 7 147 7 HOH HOH . D 4 HOH A 8 148 8 HOH HOH . D 4 HOH A 9 149 9 HOH HOH . D 4 HOH A 10 150 10 HOH HOH . D 4 HOH A 11 151 11 HOH HOH . D 4 HOH A 12 152 12 HOH HOH . D 4 HOH A 13 153 13 HOH HOH . D 4 HOH A 14 154 14 HOH HOH . D 4 HOH A 15 155 15 HOH HOH . D 4 HOH A 16 156 16 HOH HOH . D 4 HOH A 17 157 17 HOH HOH . D 4 HOH A 18 158 18 HOH HOH . D 4 HOH A 19 159 19 HOH HOH . D 4 HOH A 20 160 20 HOH HOH . D 4 HOH A 21 161 21 HOH HOH . D 4 HOH A 22 162 22 HOH HOH . D 4 HOH A 23 163 23 HOH HOH . D 4 HOH A 24 164 24 HOH HOH . D 4 HOH A 25 165 25 HOH HOH . D 4 HOH A 26 166 26 HOH HOH . D 4 HOH A 27 167 27 HOH HOH . D 4 HOH A 28 168 28 HOH HOH . D 4 HOH A 29 169 29 HOH HOH . D 4 HOH A 30 170 30 HOH HOH . D 4 HOH A 31 171 31 HOH HOH . D 4 HOH A 32 172 32 HOH HOH . D 4 HOH A 33 173 33 HOH HOH . D 4 HOH A 34 174 34 HOH HOH . D 4 HOH A 35 175 35 HOH HOH . D 4 HOH A 36 176 36 HOH HOH . D 4 HOH A 37 177 37 HOH HOH . D 4 HOH A 38 178 38 HOH HOH . D 4 HOH A 39 179 39 HOH HOH . D 4 HOH A 40 180 40 HOH HOH . D 4 HOH A 41 181 41 HOH HOH . D 4 HOH A 42 182 42 HOH HOH . D 4 HOH A 43 183 43 HOH HOH . D 4 HOH A 44 184 44 HOH HOH . D 4 HOH A 45 185 45 HOH HOH . D 4 HOH A 46 186 46 HOH HOH . D 4 HOH A 47 187 47 HOH HOH . D 4 HOH A 48 188 48 HOH HOH . D 4 HOH A 49 189 49 HOH HOH . D 4 HOH A 50 190 50 HOH HOH . D 4 HOH A 51 191 51 HOH HOH . D 4 HOH A 52 192 52 HOH HOH . D 4 HOH A 53 193 53 HOH HOH . D 4 HOH A 54 194 54 HOH HOH . D 4 HOH A 55 195 55 HOH HOH . D 4 HOH A 56 196 56 HOH HOH . D 4 HOH A 57 197 57 HOH HOH . D 4 HOH A 58 198 58 HOH HOH . D 4 HOH A 59 199 59 HOH HOH . D 4 HOH A 60 200 60 HOH HOH . D 4 HOH A 61 201 61 HOH HOH . D 4 HOH A 62 202 62 HOH HOH . D 4 HOH A 63 203 63 HOH HOH . D 4 HOH A 64 204 64 HOH HOH . D 4 HOH A 65 205 65 HOH HOH . D 4 HOH A 66 206 66 HOH HOH . D 4 HOH A 67 207 67 HOH HOH . D 4 HOH A 68 208 68 HOH HOH . D 4 HOH A 69 209 69 HOH HOH . D 4 HOH A 70 210 70 HOH HOH . D 4 HOH A 71 211 71 HOH HOH . D 4 HOH A 72 212 72 HOH HOH . D 4 HOH A 73 213 73 HOH HOH . D 4 HOH A 74 214 74 HOH HOH . D 4 HOH A 75 215 75 HOH HOH . D 4 HOH A 76 216 76 HOH HOH . D 4 HOH A 77 217 77 HOH HOH . D 4 HOH A 78 218 78 HOH HOH . D 4 HOH A 79 219 79 HOH HOH . D 4 HOH A 80 220 80 HOH HOH . D 4 HOH A 81 221 81 HOH HOH . D 4 HOH A 82 222 82 HOH HOH . D 4 HOH A 83 223 83 HOH HOH . D 4 HOH A 84 224 84 HOH HOH . D 4 HOH A 85 225 85 HOH HOH . D 4 HOH A 86 226 86 HOH HOH . D 4 HOH A 87 227 86 HOH HOH . D 4 HOH A 88 228 88 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . B 2 -19.936 40.817 34.428 1 26.96 ? PA FAD 139 A 1 HETATM 2 O O1A FAD . . . B 2 -20.933 41.963 34.516 1 26.85 ? O1A FAD 139 A 1 HETATM 3 O O2A FAD . . . B 2 -20.183 39.712 35.439 1 34.13 ? O2A FAD 139 A 1 HETATM 4 O O5B FAD . . . B 2 -18.408 41.309 34.761 1 25.97 ? O5B FAD 139 A 1 HETATM 5 C C5B FAD . . . B 2 -17.38 40.379 34.515 1 28.89 ? C5B FAD 139 A 1 HETATM 6 C C4B FAD . . . B 2 -16.488 41.09 33.518 1 32.16 ? C4B FAD 139 A 1 HETATM 7 O O4B FAD . . . B 2 -15.792 42.146 34.213 1 35.18 ? O4B FAD 139 A 1 HETATM 8 C C3B FAD . . . B 2 -15.472 40.112 32.937 1 33.26 ? C3B FAD 139 A 1 HETATM 9 O O3B FAD . . . B 2 -15.858 39.69 31.629 1 30.24 ? O3B FAD 139 A 1 HETATM 10 C C2B FAD . . . B 2 -14.16 40.888 33.052 1 35.36 ? C2B FAD 139 A 1 HETATM 11 O O2B FAD . . . B 2 -13.89 41.587 31.848 1 37.96 ? O2B FAD 139 A 1 HETATM 12 C C1B FAD . . . B 2 -14.395 41.906 34.17 1 37.48 ? C1B FAD 139 A 1 HETATM 13 N N9A FAD . . . B 2 -13.955 41.376 35.485 1 42.33 ? N9A FAD 139 A 1 HETATM 14 C C8A FAD . . . B 2 -13.891 40.049 35.846 1 44.46 ? C8A FAD 139 A 1 HETATM 15 N N7A FAD . . . B 2 -13.432 39.962 37.119 1 46.69 ? N7A FAD 139 A 1 HETATM 16 C C5A FAD . . . B 2 -13.215 41.206 37.586 1 44.69 ? C5A FAD 139 A 1 HETATM 17 C C6A FAD . . . B 2 -12.747 41.647 38.823 1 45.58 ? C6A FAD 139 A 1 HETATM 18 N N6A FAD . . . B 2 -12.164 40.763 39.647 1 46.13 ? N6A FAD 139 A 1 HETATM 19 N N1A FAD . . . B 2 -12.605 43.011 39.017 1 46.87 ? N1A FAD 139 A 1 HETATM 20 C C2A FAD . . . B 2 -12.928 43.91 38.003 1 47.16 ? C2A FAD 139 A 1 HETATM 21 N N3A FAD . . . B 2 -13.396 43.455 36.774 1 45.83 ? N3A FAD 139 A 1 HETATM 22 C C4A FAD . . . B 2 -13.538 42.114 36.574 1 43.99 ? C4A FAD 139 A 1 HETATM 23 N N1 FAD . . . B 2 -23.595 34.506 30.99 1 11.23 ? N1 FAD 139 A 1 HETATM 24 C C2 FAD . . . B 2 -24.898 34.916 30.797 1 11.46 ? C2 FAD 139 A 1 HETATM 25 O O2 FAD . . . B 2 -25.282 35.825 31.539 1 12.36 ? O2 FAD 139 A 1 HETATM 26 N N3 FAD . . . B 2 -25.683 34.376 29.805 1 10.74 ? N3 FAD 139 A 1 HETATM 27 C C4 FAD . . . B 2 -25.2 33.366 29.001 1 10.94 ? C4 FAD 139 A 1 HETATM 28 O O4 FAD . . . B 2 -25.933 32.875 28.095 1 11.66 ? O4 FAD 139 A 1 HETATM 29 C C4X FAD . . . B 2 -23.895 32.88 29.222 1 9.21 ? C4X FAD 139 A 1 HETATM 30 N N5 FAD . . . B 2 -23.415 31.854 28.424 1 9.25 ? N5 FAD 139 A 1 HETATM 31 C C5X FAD . . . B 2 -22.129 31.386 28.659 1 9.39 ? C5X FAD 139 A 1 HETATM 32 C C6 FAD . . . B 2 -21.68 30.326 27.848 1 10.34 ? C6 FAD 139 A 1 HETATM 33 C C7 FAD . . . B 2 -20.372 29.881 28.064 1 11.03 ? C7 FAD 139 A 1 HETATM 34 C C7M FAD . . . B 2 -19.878 28.738 27.209 1 12.62 ? C7M FAD 139 A 1 HETATM 35 C C8 FAD . . . B 2 -19.547 30.466 29.049 1 12.23 ? C8 FAD 139 A 1 HETATM 36 C C8M FAD . . . B 2 -18.113 30.016 29.285 1 14.67 ? C8M FAD 139 A 1 HETATM 37 C C9 FAD . . . B 2 -19.996 31.553 29.81 1 9.94 ? C9 FAD 139 A 1 HETATM 38 C C9A FAD . . . B 2 -21.315 32.01 29.622 1 9.04 ? C9A FAD 139 A 1 HETATM 39 N N10 FAD . . . B 2 -21.789 33.07 30.386 1 9.82 ? N10 FAD 139 A 1 HETATM 40 C C10 FAD . . . B 2 -23.105 33.49 30.196 1 9.02 ? C10 FAD 139 A 1 HETATM 41 C C1' FAD . . . B 2 -20.95 33.858 31.337 1 10.22 ? C1' FAD 139 A 1 HETATM 42 C C2' FAD . . . B 2 -20.375 35.149 30.734 1 9.39 ? C2' FAD 139 A 1 HETATM 43 O O2' FAD . . . B 2 -19.55 34.863 29.601 1 9.86 ? O2' FAD 139 A 1 HETATM 44 C C3' FAD . . . B 2 -19.483 35.799 31.794 1 13.92 ? C3' FAD 139 A 1 HETATM 45 O O3' FAD . . . B 2 -20.31 36.012 32.951 1 18.61 ? O3' FAD 139 A 1 HETATM 46 C C4' FAD . . . B 2 -18.897 37.118 31.308 1 17.57 ? C4' FAD 139 A 1 HETATM 47 O O4' FAD . . . B 2 -17.837 37.604 32.194 1 18.19 ? O4' FAD 139 A 1 HETATM 48 C C5' FAD . . . B 2 -19.999 38.187 31.209 1 19.01 ? C5' FAD 139 A 1 HETATM 49 O O5' FAD . . . B 2 -19.41 39.418 30.816 1 22.44 ? O5' FAD 139 A 1 HETATM 50 P P FAD . . . B 2 -19.994 40.714 31.576 1 26.34 ? P FAD 139 A 1 HETATM 51 O O1P FAD . . . B 2 -19.126 41.939 31.31 1 31.03 ? O1P FAD 139 A 1 HETATM 52 O O2P FAD . . . B 2 -21.475 40.878 31.384 1 22.94 ? O2P FAD 139 A 1 HETATM 53 O O3P FAD . . . B 2 -19.724 40.122 33.039 1 28.94 ? O3P FAD 139 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 53 #