data_3ECR
#
_model_server_result.job_id            4PRVkMsCVL35677xUEs9Gw 
_model_server_result.datetime_utc      '2024-12-02 04:42:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ecr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":365}' 
#
_entry.id    3ECR 
#
_exptl.entry_id    3ECR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              420.413 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '3-[5-{[3-(2-carboxyethyl)-4-(carboxymethyl)-5-methyl-1H-pyrrol-2-yl]methyl}-4-(carboxymethyl)-1H-pyrrol-3-yl]propanoic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3ECR 
_cell.length_a            71.61 
_cell.length_b            81.061 
_cell.length_c            109.211 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3ECR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C20 H24 N2 O8' 
_chem_comp.formula_weight    420.413 
_chem_comp.id                DPM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '3-[5-{[3-(2-carboxyethyl)-4-(carboxymethyl)-5-methyl-1H-pyrrol-2-yl]methyl}-4-(carboxymethyl)-1H-pyrrol-3-yl]propanoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'DIPYRROMETHANE COFACTOR' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1A C2A DPM doub 83 n y 
C1A CHA DPM sing 84 n n 
C1A NA DPM sing 85 n y 
C2A C3A DPM sing 86 n y 
C2A C5A DPM sing 87 n n 
C3A C4A DPM doub 88 n y 
C3A C7A DPM sing 89 n n 
C4A NA DPM sing 90 n y 
C4A CHB DPM sing 91 n n 
C5A C6A DPM sing 92 n n 
C6A O1A DPM doub 93 n n 
C6A O2A DPM sing 94 n n 
C7A C8A DPM sing 95 n n 
C8A C9A DPM sing 96 n n 
C9A O3A DPM doub 97 n n 
C9A O4A DPM sing 98 n n 
C1B C2B DPM doub 99 n y 
C1B CHB DPM sing 100 n n 
C1B NB DPM sing 101 n y 
C2B C3B DPM sing 102 n y 
C2B C5B DPM sing 103 n n 
C3B C4B DPM doub 104 n y 
C3B C7B DPM sing 105 n n 
C4B NB DPM sing 106 n y 
C5B C6B DPM sing 107 n n 
C6B O1B DPM doub 108 n n 
C6B O2B DPM sing 109 n n 
C7B C8B DPM sing 110 n n 
C8B C9B DPM sing 111 n n 
C9B O3B DPM doub 112 n n 
C9B O4B DPM sing 113 n n 
C5A H5A1 DPM sing 114 n n 
C5A H5A2 DPM sing 115 n n 
C7A H7A1 DPM sing 116 n n 
C7A H7A2 DPM sing 117 n n 
C8A H8A1 DPM sing 118 n n 
C8A H8A2 DPM sing 119 n n 
CHA HCA1 DPM sing 120 n n 
CHA HCA2 DPM sing 121 n n 
CHA HCA3 DPM sing 122 n n 
NA H10 DPM sing 123 n n 
O2A HOA2 DPM sing 124 n n 
O4A HOA4 DPM sing 125 n n 
C4B H4B1 DPM sing 126 n n 
C5B H5B1 DPM sing 127 n n 
C5B H5B2 DPM sing 128 n n 
C7B H7B1 DPM sing 129 n n 
C7B H7B2 DPM sing 130 n n 
C8B H8B1 DPM sing 131 n n 
C8B H8B2 DPM sing 132 n n 
CHB HCB1 DPM sing 133 n n 
CHB HCB2 DPM sing 134 n n 
NB H22 DPM sing 135 n n 
O2B HOB2 DPM sing 136 n n 
O4B HOB4 DPM sing 137 n n 
#
_atom_sites.entry_id                     3ECR 
_atom_sites.fract_transf_matrix[1][1]    0.013965 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012336 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009157 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 DPM A 1 365 315 DPM DPM . 
D 2 DPM B 1 365 314 DPM DPM . 
E 3 HOH A 1 366 5 HOH HOH . 
E 3 HOH A 2 367 7 HOH HOH . 
E 3 HOH A 3 368 13 HOH HOH . 
E 3 HOH A 4 369 15 HOH HOH . 
E 3 HOH A 5 370 16 HOH HOH . 
E 3 HOH A 6 371 18 HOH HOH . 
E 3 HOH A 7 372 19 HOH HOH . 
E 3 HOH A 8 373 20 HOH HOH . 
E 3 HOH A 9 374 21 HOH HOH . 
E 3 HOH A 10 375 22 HOH HOH . 
E 3 HOH A 11 376 26 HOH HOH . 
E 3 HOH A 12 377 28 HOH HOH . 
E 3 HOH A 13 378 31 HOH HOH . 
E 3 HOH A 14 379 35 HOH HOH . 
E 3 HOH A 15 380 38 HOH HOH . 
E 3 HOH A 16 381 39 HOH HOH . 
E 3 HOH A 17 382 41 HOH HOH . 
E 3 HOH A 18 383 42 HOH HOH . 
E 3 HOH A 19 384 44 HOH HOH . 
E 3 HOH A 20 385 45 HOH HOH . 
E 3 HOH A 21 386 46 HOH HOH . 
E 3 HOH A 22 387 47 HOH HOH . 
E 3 HOH A 23 388 49 HOH HOH . 
E 3 HOH A 24 389 50 HOH HOH . 
E 3 HOH A 25 390 54 HOH HOH . 
E 3 HOH A 26 391 55 HOH HOH . 
E 3 HOH A 27 392 56 HOH HOH . 
E 3 HOH A 28 393 59 HOH HOH . 
E 3 HOH A 29 394 61 HOH HOH . 
E 3 HOH A 30 395 62 HOH HOH . 
E 3 HOH A 31 396 63 HOH HOH . 
E 3 HOH A 32 397 64 HOH HOH . 
E 3 HOH A 33 398 67 HOH HOH . 
E 3 HOH A 34 399 69 HOH HOH . 
E 3 HOH A 35 400 70 HOH HOH . 
E 3 HOH A 36 401 71 HOH HOH . 
E 3 HOH A 37 402 72 HOH HOH . 
E 3 HOH A 38 403 73 HOH HOH . 
E 3 HOH A 39 404 74 HOH HOH . 
E 3 HOH A 40 405 76 HOH HOH . 
E 3 HOH A 41 406 77 HOH HOH . 
E 3 HOH A 42 407 78 HOH HOH . 
E 3 HOH A 43 408 80 HOH HOH . 
E 3 HOH A 44 409 81 HOH HOH . 
E 3 HOH A 45 410 82 HOH HOH . 
E 3 HOH A 46 411 86 HOH HOH . 
E 3 HOH A 47 412 87 HOH HOH . 
E 3 HOH A 48 413 88 HOH HOH . 
E 3 HOH A 49 414 89 HOH HOH . 
E 3 HOH A 50 415 92 HOH HOH . 
E 3 HOH A 51 416 94 HOH HOH . 
E 3 HOH A 52 417 95 HOH HOH . 
E 3 HOH A 53 418 97 HOH HOH . 
E 3 HOH A 54 419 98 HOH HOH . 
E 3 HOH A 55 420 100 HOH HOH . 
E 3 HOH A 56 421 101 HOH HOH . 
E 3 HOH A 57 422 102 HOH HOH . 
E 3 HOH A 58 423 103 HOH HOH . 
E 3 HOH A 59 424 105 HOH HOH . 
E 3 HOH A 60 425 107 HOH HOH . 
E 3 HOH A 61 426 108 HOH HOH . 
E 3 HOH A 62 427 109 HOH HOH . 
E 3 HOH A 63 428 111 HOH HOH . 
E 3 HOH A 64 429 114 HOH HOH . 
E 3 HOH A 65 430 116 HOH HOH . 
E 3 HOH A 66 431 117 HOH HOH . 
E 3 HOH A 67 432 118 HOH HOH . 
E 3 HOH A 68 433 119 HOH HOH . 
E 3 HOH A 69 434 120 HOH HOH . 
E 3 HOH A 70 435 123 HOH HOH . 
E 3 HOH A 71 436 124 HOH HOH . 
E 3 HOH A 72 437 128 HOH HOH . 
E 3 HOH A 73 438 129 HOH HOH . 
E 3 HOH A 74 439 130 HOH HOH . 
E 3 HOH A 75 440 134 HOH HOH . 
E 3 HOH A 76 441 135 HOH HOH . 
E 3 HOH A 77 442 137 HOH HOH . 
F 3 HOH B 1 366 1 HOH HOH . 
F 3 HOH B 2 367 2 HOH HOH . 
F 3 HOH B 3 368 3 HOH HOH . 
F 3 HOH B 4 369 4 HOH HOH . 
F 3 HOH B 5 370 6 HOH HOH . 
F 3 HOH B 6 371 8 HOH HOH . 
F 3 HOH B 7 372 9 HOH HOH . 
F 3 HOH B 8 373 10 HOH HOH . 
F 3 HOH B 9 374 11 HOH HOH . 
F 3 HOH B 10 375 12 HOH HOH . 
F 3 HOH B 11 376 14 HOH HOH . 
F 3 HOH B 12 377 17 HOH HOH . 
F 3 HOH B 13 378 23 HOH HOH . 
F 3 HOH B 14 379 24 HOH HOH . 
F 3 HOH B 15 380 25 HOH HOH . 
F 3 HOH B 16 381 27 HOH HOH . 
F 3 HOH B 17 382 29 HOH HOH . 
F 3 HOH B 18 383 30 HOH HOH . 
F 3 HOH B 19 384 32 HOH HOH . 
F 3 HOH B 20 385 33 HOH HOH . 
F 3 HOH B 21 386 34 HOH HOH . 
F 3 HOH B 22 387 36 HOH HOH . 
F 3 HOH B 23 388 37 HOH HOH . 
F 3 HOH B 24 389 40 HOH HOH . 
F 3 HOH B 25 390 43 HOH HOH . 
F 3 HOH B 26 391 48 HOH HOH . 
F 3 HOH B 27 392 51 HOH HOH . 
F 3 HOH B 28 393 52 HOH HOH . 
F 3 HOH B 29 394 53 HOH HOH . 
F 3 HOH B 30 395 57 HOH HOH . 
F 3 HOH B 31 396 58 HOH HOH . 
F 3 HOH B 32 397 60 HOH HOH . 
F 3 HOH B 33 398 65 HOH HOH . 
F 3 HOH B 34 399 66 HOH HOH . 
F 3 HOH B 35 400 68 HOH HOH . 
F 3 HOH B 36 401 75 HOH HOH . 
F 3 HOH B 37 402 79 HOH HOH . 
F 3 HOH B 38 403 83 HOH HOH . 
F 3 HOH B 39 404 84 HOH HOH . 
F 3 HOH B 40 405 85 HOH HOH . 
F 3 HOH B 41 406 90 HOH HOH . 
F 3 HOH B 42 407 91 HOH HOH . 
F 3 HOH B 43 408 93 HOH HOH . 
F 3 HOH B 44 409 96 HOH HOH . 
F 3 HOH B 45 410 99 HOH HOH . 
F 3 HOH B 46 411 104 HOH HOH . 
F 3 HOH B 47 412 106 HOH HOH . 
F 3 HOH B 48 413 110 HOH HOH . 
F 3 HOH B 49 414 112 HOH HOH . 
F 3 HOH B 50 415 113 HOH HOH . 
F 3 HOH B 51 416 115 HOH HOH . 
F 3 HOH B 52 417 122 HOH HOH . 
F 3 HOH B 53 418 125 HOH HOH . 
F 3 HOH B 54 419 126 HOH HOH . 
F 3 HOH B 55 420 127 HOH HOH . 
F 3 HOH B 56 421 131 HOH HOH . 
F 3 HOH B 57 422 132 HOH HOH . 
F 3 HOH B 58 423 133 HOH HOH . 
F 3 HOH B 59 424 136 HOH HOH . 
F 3 HOH B 60 425 138 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1A DPM . . . C 2 27.532 36.069 32.975 1 33.5 ? C1A DPM 365 A 1 
HETATM 2 C C2A DPM . . . C 2 27.307 36.772 34.174 1 29.31 ? C2A DPM 365 A 1 
HETATM 3 C C3A DPM . . . C 2 27.534 35.951 35.215 1 31.69 ? C3A DPM 365 A 1 
HETATM 4 C C4A DPM . . . C 2 27.941 34.616 34.638 1 25.15 ? C4A DPM 365 A 1 
HETATM 5 C C5A DPM . . . C 2 26.882 38.231 34.326 1 22.41 ? C5A DPM 365 A 1 
HETATM 6 C C6A DPM . . . C 2 25.391 38.436 34.518 1 26.08 ? C6A DPM 365 A 1 
HETATM 7 C C7A DPM . . . C 2 27.359 36.381 36.702 1 23.45 ? C7A DPM 365 A 1 
HETATM 8 C C8A DPM . . . C 2 28.61 36.835 37.445 1 29.36 ? C8A DPM 365 A 1 
HETATM 9 C C9A DPM . . . C 2 28.623 36.869 38.991 1 42.08 ? C9A DPM 365 A 1 
HETATM 10 C CHA DPM . . . C 2 27.395 36.638 31.561 1 25.49 ? CHA DPM 365 A 1 
HETATM 11 N NA DPM . . . C 2 27.94 34.731 33.306 1 23.8 ? NA DPM 365 A 1 
HETATM 12 O O1A DPM . . . C 2 25.038 39.661 35.028 1 21.98 ? O1A DPM 365 A 1 
HETATM 13 O O2A DPM . . . C 2 24.737 37.389 35.158 1 28.36 ? O2A DPM 365 A 1 
HETATM 14 O O3A DPM . . . C 2 29.894 37.223 39.494 1 35.81 ? O3A DPM 365 A 1 
HETATM 15 O O4A DPM . . . C 2 27.621 37.676 39.571 1 40.69 ? O4A DPM 365 A 1 
HETATM 16 C C1B DPM . . . C 2 27.431 32.186 35.424 1 20.86 ? C1B DPM 365 A 1 
HETATM 17 C C2B DPM . . . C 2 26.246 31.936 36.423 1 25.94 ? C2B DPM 365 A 1 
HETATM 18 C C3B DPM . . . C 2 25.64 30.615 35.979 1 22.72 ? C3B DPM 365 A 1 
HETATM 19 C C4B DPM . . . C 2 25.951 30.529 34.499 1 20.82 ? C4B DPM 365 A 1 
HETATM 20 C C5B DPM . . . C 2 26.392 32.146 37.926 1 20.31 ? C5B DPM 365 A 1 
HETATM 21 C C6B DPM . . . C 2 25.472 33.201 38.507 1 22.4 ? C6B DPM 365 A 1 
HETATM 22 C C7B DPM . . . C 2 24.275 30.174 36.509 1 22.23 ? C7B DPM 365 A 1 
HETATM 23 C C8B DPM . . . C 2 23.011 30.492 35.689 1 27.26 ? C8B DPM 365 A 1 
HETATM 24 C C9B DPM . . . C 2 22.774 29.886 34.293 1 21.25 ? C9B DPM 365 A 1 
HETATM 25 C CHB DPM . . . C 2 28.408 33.378 35.445 1 19.18 ? CHB DPM 365 A 1 
HETATM 26 N NB DPM . . . C 2 27.121 31.386 34.185 1 20.44 ? NB DPM 365 A 1 
HETATM 27 O O1B DPM . . . C 2 24.709 33.847 37.558 1 20.27 ? O1B DPM 365 A 1 
HETATM 28 O O2B DPM . . . C 2 24.752 32.851 39.66 1 33.87 ? O2B DPM 365 A 1 
HETATM 29 O O3B DPM . . . C 2 22.262 30.924 33.477 1 21.47 ? O3B DPM 365 A 1 
HETATM 30 O O4B DPM . . . C 2 23.441 29.102 34.064 1 31.76 ? O4B DPM 365 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           30 
#