data_3ED5
#
_model_server_result.job_id            YeOb-fqELsY3JBPDQAL1kg 
_model_server_result.datetime_utc      '2024-12-26 11:02:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ed5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":243}' 
#
_entry.id    3ED5 
#
_exptl.entry_id    3ED5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              46.025 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FORMIC ACID' 
_entity.pdbx_number_of_molecules    10 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3ED5 
_cell.length_a            91.186 
_cell.length_b            91.186 
_cell.length_c            68.253 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3ED5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C MSE 4 A MSE 1 1_555 A N LYS 5 A LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale2 A C ASP 43 A ASP 40 1_555 A N MSE 44 A MSE 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale3 A C MSE 44 A MSE 41 1_555 A N LYS 45 A LYS 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale4 A C LYS 63 A LYS 60 1_555 A N MSE 64 A MSE 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale5 A C MSE 64 A MSE 61 1_555 A N THR 65 A THR 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale6 A C PRO 159 A PRO 156 1_555 A N MSE 160 A MSE 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale7 A C MSE 160 A MSE 157 1_555 A N LYS 161 A LYS 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale8 A C TRP 202 A TRP 199 1_555 A N MSE 203 A MSE 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale9 A C MSE 203 A MSE 200 1_555 A N ASN 204 A ASN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale10 A C ASP 206 A ASP 203 1_555 A N MSE 207 A MSE 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale11 A C MSE 207 A MSE 204 1_555 A N LYS 208 A LYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
#
_chem_comp.formula           'C H2 O2' 
_chem_comp.formula_weight    46.025 
_chem_comp.id                FMT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FORMIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C O1 FMT doub 83 n n 
C O2 FMT sing 84 n n 
C H FMT sing 85 n n 
O2 HO2 FMT sing 86 n n 
#
_atom_sites.entry_id                     3ED5 
_atom_sites.fract_transf_matrix[1][1]    0.010967 
_atom_sites.fract_transf_matrix[1][2]    0.006332 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012663 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014651 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FMT A 1 236 1 FMT FMT . 
C 2 FMT A 1 237 2 FMT FMT . 
D 2 FMT A 1 238 3 FMT FMT . 
E 2 FMT A 1 239 4 FMT FMT . 
F 2 FMT A 1 240 5 FMT FMT . 
G 2 FMT A 1 241 6 FMT FMT . 
H 2 FMT A 1 242 7 FMT FMT . 
I 2 FMT A 1 243 8 FMT FMT . 
J 2 FMT A 1 244 9 FMT FMT . 
K 2 FMT A 1 245 10 FMT FMT . 
L 3 HOH A 1 246 1 HOH HOH . 
L 3 HOH A 2 247 2 HOH HOH . 
L 3 HOH A 3 248 3 HOH HOH . 
L 3 HOH A 4 249 4 HOH HOH . 
L 3 HOH A 5 250 5 HOH HOH . 
L 3 HOH A 6 251 6 HOH HOH . 
L 3 HOH A 7 252 7 HOH HOH . 
L 3 HOH A 8 253 8 HOH HOH . 
L 3 HOH A 9 254 9 HOH HOH . 
L 3 HOH A 10 255 10 HOH HOH . 
L 3 HOH A 11 256 11 HOH HOH . 
L 3 HOH A 12 257 12 HOH HOH . 
L 3 HOH A 13 258 13 HOH HOH . 
L 3 HOH A 14 259 14 HOH HOH . 
L 3 HOH A 15 260 15 HOH HOH . 
L 3 HOH A 16 261 16 HOH HOH . 
L 3 HOH A 17 262 17 HOH HOH . 
L 3 HOH A 18 263 18 HOH HOH . 
L 3 HOH A 19 264 19 HOH HOH . 
L 3 HOH A 20 265 20 HOH HOH . 
L 3 HOH A 21 266 21 HOH HOH . 
L 3 HOH A 22 267 22 HOH HOH . 
L 3 HOH A 23 268 23 HOH HOH . 
L 3 HOH A 24 269 24 HOH HOH . 
L 3 HOH A 25 270 25 HOH HOH . 
L 3 HOH A 26 271 26 HOH HOH . 
L 3 HOH A 27 272 27 HOH HOH . 
L 3 HOH A 28 273 28 HOH HOH . 
L 3 HOH A 29 274 29 HOH HOH . 
L 3 HOH A 30 275 30 HOH HOH . 
L 3 HOH A 31 276 31 HOH HOH . 
L 3 HOH A 32 277 32 HOH HOH . 
L 3 HOH A 33 278 33 HOH HOH . 
L 3 HOH A 34 279 34 HOH HOH . 
L 3 HOH A 35 280 35 HOH HOH . 
L 3 HOH A 36 281 36 HOH HOH . 
L 3 HOH A 37 282 37 HOH HOH . 
L 3 HOH A 38 283 38 HOH HOH . 
L 3 HOH A 39 284 39 HOH HOH . 
L 3 HOH A 40 285 40 HOH HOH . 
L 3 HOH A 41 286 41 HOH HOH . 
L 3 HOH A 42 287 42 HOH HOH . 
L 3 HOH A 43 288 43 HOH HOH . 
L 3 HOH A 44 289 44 HOH HOH . 
L 3 HOH A 45 290 45 HOH HOH . 
L 3 HOH A 46 291 46 HOH HOH . 
L 3 HOH A 47 292 47 HOH HOH . 
L 3 HOH A 48 293 48 HOH HOH . 
L 3 HOH A 49 294 49 HOH HOH . 
L 3 HOH A 50 295 50 HOH HOH . 
L 3 HOH A 51 296 51 HOH HOH . 
L 3 HOH A 52 297 52 HOH HOH . 
L 3 HOH A 53 298 53 HOH HOH . 
L 3 HOH A 54 299 54 HOH HOH . 
L 3 HOH A 55 300 55 HOH HOH . 
L 3 HOH A 56 301 56 HOH HOH . 
L 3 HOH A 57 302 57 HOH HOH . 
L 3 HOH A 58 303 58 HOH HOH . 
L 3 HOH A 59 304 59 HOH HOH . 
L 3 HOH A 60 305 60 HOH HOH . 
L 3 HOH A 61 306 61 HOH HOH . 
L 3 HOH A 62 307 62 HOH HOH . 
L 3 HOH A 63 308 63 HOH HOH . 
L 3 HOH A 64 309 64 HOH HOH . 
L 3 HOH A 65 310 65 HOH HOH . 
L 3 HOH A 66 311 66 HOH HOH . 
L 3 HOH A 67 312 67 HOH HOH . 
L 3 HOH A 68 313 68 HOH HOH . 
L 3 HOH A 69 314 69 HOH HOH . 
L 3 HOH A 70 315 70 HOH HOH . 
L 3 HOH A 71 316 71 HOH HOH . 
L 3 HOH A 72 317 72 HOH HOH . 
L 3 HOH A 73 318 73 HOH HOH . 
L 3 HOH A 74 319 74 HOH HOH . 
L 3 HOH A 75 320 75 HOH HOH . 
L 3 HOH A 76 321 76 HOH HOH . 
L 3 HOH A 77 322 77 HOH HOH . 
L 3 HOH A 78 323 78 HOH HOH . 
L 3 HOH A 79 324 79 HOH HOH . 
L 3 HOH A 80 325 80 HOH HOH . 
L 3 HOH A 81 326 81 HOH HOH . 
L 3 HOH A 82 327 82 HOH HOH . 
L 3 HOH A 83 328 83 HOH HOH . 
L 3 HOH A 84 329 84 HOH HOH . 
L 3 HOH A 85 330 85 HOH HOH . 
L 3 HOH A 86 331 86 HOH HOH . 
L 3 HOH A 87 332 87 HOH HOH . 
L 3 HOH A 88 333 88 HOH HOH . 
L 3 HOH A 89 334 89 HOH HOH . 
L 3 HOH A 90 335 90 HOH HOH . 
L 3 HOH A 91 336 91 HOH HOH . 
L 3 HOH A 92 337 92 HOH HOH . 
L 3 HOH A 93 338 93 HOH HOH . 
L 3 HOH A 94 339 94 HOH HOH . 
L 3 HOH A 95 340 95 HOH HOH . 
L 3 HOH A 96 341 96 HOH HOH . 
L 3 HOH A 97 342 97 HOH HOH . 
L 3 HOH A 98 343 98 HOH HOH . 
L 3 HOH A 99 344 99 HOH HOH . 
L 3 HOH A 100 345 100 HOH HOH . 
L 3 HOH A 101 346 101 HOH HOH . 
L 3 HOH A 102 347 102 HOH HOH . 
L 3 HOH A 103 348 103 HOH HOH . 
L 3 HOH A 104 349 104 HOH HOH . 
L 3 HOH A 105 350 105 HOH HOH . 
L 3 HOH A 106 351 106 HOH HOH . 
L 3 HOH A 107 352 107 HOH HOH . 
L 3 HOH A 108 353 108 HOH HOH . 
L 3 HOH A 109 354 109 HOH HOH . 
L 3 HOH A 110 355 110 HOH HOH . 
L 3 HOH A 111 356 111 HOH HOH . 
L 3 HOH A 112 357 112 HOH HOH . 
L 3 HOH A 113 358 113 HOH HOH . 
L 3 HOH A 114 359 114 HOH HOH . 
L 3 HOH A 115 360 115 HOH HOH . 
L 3 HOH A 116 361 116 HOH HOH . 
L 3 HOH A 117 362 117 HOH HOH . 
L 3 HOH A 118 363 118 HOH HOH . 
L 3 HOH A 119 364 119 HOH HOH . 
L 3 HOH A 120 365 120 HOH HOH . 
L 3 HOH A 121 366 121 HOH HOH . 
L 3 HOH A 122 367 122 HOH HOH . 
L 3 HOH A 123 368 123 HOH HOH . 
L 3 HOH A 124 369 124 HOH HOH . 
L 3 HOH A 125 370 125 HOH HOH . 
L 3 HOH A 126 371 126 HOH HOH . 
L 3 HOH A 127 372 127 HOH HOH . 
L 3 HOH A 128 373 128 HOH HOH . 
L 3 HOH A 129 374 129 HOH HOH . 
L 3 HOH A 130 375 130 HOH HOH . 
L 3 HOH A 131 376 131 HOH HOH . 
L 3 HOH A 132 377 132 HOH HOH . 
L 3 HOH A 133 378 133 HOH HOH . 
L 3 HOH A 134 379 134 HOH HOH . 
L 3 HOH A 135 380 135 HOH HOH . 
L 3 HOH A 136 381 136 HOH HOH . 
L 3 HOH A 137 382 137 HOH HOH . 
L 3 HOH A 138 383 138 HOH HOH . 
L 3 HOH A 139 384 139 HOH HOH . 
L 3 HOH A 140 385 140 HOH HOH . 
L 3 HOH A 141 386 141 HOH HOH . 
L 3 HOH A 142 387 142 HOH HOH . 
L 3 HOH A 143 388 143 HOH HOH . 
L 3 HOH A 144 389 144 HOH HOH . 
L 3 HOH A 145 390 145 HOH HOH . 
L 3 HOH A 146 391 146 HOH HOH . 
L 3 HOH A 147 392 147 HOH HOH . 
L 3 HOH A 148 393 148 HOH HOH . 
L 3 HOH A 149 394 149 HOH HOH . 
L 3 HOH A 150 395 150 HOH HOH . 
L 3 HOH A 151 396 151 HOH HOH . 
L 3 HOH A 152 397 152 HOH HOH . 
L 3 HOH A 153 398 153 HOH HOH . 
L 3 HOH A 154 399 154 HOH HOH . 
L 3 HOH A 155 400 155 HOH HOH . 
L 3 HOH A 156 401 156 HOH HOH . 
L 3 HOH A 157 402 157 HOH HOH . 
L 3 HOH A 158 403 158 HOH HOH . 
L 3 HOH A 159 404 159 HOH HOH . 
L 3 HOH A 160 405 160 HOH HOH . 
L 3 HOH A 161 406 161 HOH HOH . 
L 3 HOH A 162 407 162 HOH HOH . 
L 3 HOH A 163 408 163 HOH HOH . 
L 3 HOH A 164 409 164 HOH HOH . 
L 3 HOH A 165 410 165 HOH HOH . 
L 3 HOH A 166 411 166 HOH HOH . 
L 3 HOH A 167 412 167 HOH HOH . 
L 3 HOH A 168 413 168 HOH HOH . 
L 3 HOH A 169 414 169 HOH HOH . 
L 3 HOH A 170 415 170 HOH HOH . 
L 3 HOH A 171 416 171 HOH HOH . 
L 3 HOH A 172 417 172 HOH HOH . 
L 3 HOH A 173 418 173 HOH HOH . 
L 3 HOH A 174 419 174 HOH HOH . 
L 3 HOH A 175 420 175 HOH HOH . 
L 3 HOH A 176 421 176 HOH HOH . 
L 3 HOH A 177 422 177 HOH HOH . 
L 3 HOH A 178 423 178 HOH HOH . 
L 3 HOH A 179 424 179 HOH HOH . 
L 3 HOH A 180 425 180 HOH HOH . 
L 3 HOH A 181 426 181 HOH HOH . 
L 3 HOH A 182 427 182 HOH HOH . 
L 3 HOH A 183 428 183 HOH HOH . 
L 3 HOH A 184 429 184 HOH HOH . 
L 3 HOH A 185 430 185 HOH HOH . 
L 3 HOH A 186 431 186 HOH HOH . 
L 3 HOH A 187 432 187 HOH HOH . 
L 3 HOH A 188 433 188 HOH HOH . 
L 3 HOH A 189 434 189 HOH HOH . 
L 3 HOH A 190 435 190 HOH HOH . 
L 3 HOH A 191 436 191 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C FMT . . . I 2 -1.768 38.801 29.279 1 49.58 ? C FMT 243 A 1 
HETATM 2 O O1 FMT . . . I 2 -2.781 38.132 29.044 1 48.9 ? O1 FMT 243 A 1 
HETATM 3 O O2 FMT . . . I 2 -1.515 39.398 30.336 1 50.05 ? O2 FMT 243 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           3 
#