data_3EDY
#
_model_server_result.job_id            9viy07TF9vtK9gcpkopTgg 
_model_server_result.datetime_utc      '2024-11-29 13:09:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3edy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":702}' 
#
_entry.id    3EDY 
#
_exptl.entry_id    3EDY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3EDY 
_cell.length_a            59.807 
_cell.length_b            93.173 
_cell.length_c            102.479 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3EDY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 92 A CYS 111 1_555 A SG CYS 103 A CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? 
disulf ? disulf2 A SG CYS 346 A CYS 365 1_555 A SG CYS 507 A CYS 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? 
disulf ? disulf3 A SG CYS 503 A CYS 522 1_555 A SG CYS 518 A CYS 537 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? 
covale ? covale1 A ND2 ASN 191 A ASN 210 1_555 C C1 NAG . A NAG 564 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.598 ? 
covale ? covale2 A ND2 ASN 267 A ASN 286 1_555 D C1 NAG . A NAG 565 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale3 A ND2 ASN 294 A ASN 313 1_555 E C1 NAG . A NAG 566 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.548 ? 
covale ? covale4 A ND2 ASN 424 A ASN 443 1_555 F C1 NAG . A NAG 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     3EDY 
_atom_sites.fract_transf_matrix[1][1]    0.01672 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010733 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009758 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CA A 1 1 1 CA CA . 
C 3 NAG A 1 564 564 NAG NAG . 
D 3 NAG A 1 565 565 NAG NAG . 
E 3 NAG A 1 566 566 NAG NAG . 
F 3 NAG A 1 567 567 NAG NAG . 
G 4 EDO A 1 701 701 EDO EDO . 
H 4 EDO A 1 702 702 EDO EDO . 
I 4 EDO A 1 703 703 EDO EDO . 
J 4 EDO A 1 704 704 EDO EDO . 
K 5 HOH A 1 705 705 HOH HOH . 
K 5 HOH A 2 706 706 HOH HOH . 
K 5 HOH A 3 707 707 HOH HOH . 
K 5 HOH A 4 708 708 HOH HOH . 
K 5 HOH A 5 709 709 HOH HOH . 
K 5 HOH A 6 710 710 HOH HOH . 
K 5 HOH A 7 711 711 HOH HOH . 
K 5 HOH A 8 712 712 HOH HOH . 
K 5 HOH A 9 713 713 HOH HOH . 
K 5 HOH A 10 714 714 HOH HOH . 
K 5 HOH A 11 715 715 HOH HOH . 
K 5 HOH A 12 716 716 HOH HOH . 
K 5 HOH A 13 717 717 HOH HOH . 
K 5 HOH A 14 718 718 HOH HOH . 
K 5 HOH A 15 719 719 HOH HOH . 
K 5 HOH A 16 720 720 HOH HOH . 
K 5 HOH A 17 721 721 HOH HOH . 
K 5 HOH A 18 722 722 HOH HOH . 
K 5 HOH A 19 723 723 HOH HOH . 
K 5 HOH A 20 724 724 HOH HOH . 
K 5 HOH A 21 725 725 HOH HOH . 
K 5 HOH A 22 726 726 HOH HOH . 
K 5 HOH A 23 727 727 HOH HOH . 
K 5 HOH A 24 728 728 HOH HOH . 
K 5 HOH A 25 729 729 HOH HOH . 
K 5 HOH A 26 730 730 HOH HOH . 
K 5 HOH A 27 731 731 HOH HOH . 
K 5 HOH A 28 732 732 HOH HOH . 
K 5 HOH A 29 733 733 HOH HOH . 
K 5 HOH A 30 734 734 HOH HOH . 
K 5 HOH A 31 735 735 HOH HOH . 
K 5 HOH A 32 736 736 HOH HOH . 
K 5 HOH A 33 737 737 HOH HOH . 
K 5 HOH A 34 738 738 HOH HOH . 
K 5 HOH A 35 739 739 HOH HOH . 
K 5 HOH A 36 740 740 HOH HOH . 
K 5 HOH A 37 741 741 HOH HOH . 
K 5 HOH A 38 742 742 HOH HOH . 
K 5 HOH A 39 743 743 HOH HOH . 
K 5 HOH A 40 744 744 HOH HOH . 
K 5 HOH A 41 745 745 HOH HOH . 
K 5 HOH A 42 746 746 HOH HOH . 
K 5 HOH A 43 747 747 HOH HOH . 
K 5 HOH A 44 748 748 HOH HOH . 
K 5 HOH A 45 749 749 HOH HOH . 
K 5 HOH A 46 750 750 HOH HOH . 
K 5 HOH A 47 751 751 HOH HOH . 
K 5 HOH A 48 752 752 HOH HOH . 
K 5 HOH A 49 753 753 HOH HOH . 
K 5 HOH A 50 754 754 HOH HOH . 
K 5 HOH A 51 755 755 HOH HOH . 
K 5 HOH A 52 756 756 HOH HOH . 
K 5 HOH A 53 757 757 HOH HOH . 
K 5 HOH A 54 758 758 HOH HOH . 
K 5 HOH A 55 759 759 HOH HOH . 
K 5 HOH A 56 760 760 HOH HOH . 
K 5 HOH A 57 761 761 HOH HOH . 
K 5 HOH A 58 762 762 HOH HOH . 
K 5 HOH A 59 763 763 HOH HOH . 
K 5 HOH A 60 764 764 HOH HOH . 
K 5 HOH A 61 765 765 HOH HOH . 
K 5 HOH A 62 766 766 HOH HOH . 
K 5 HOH A 63 767 767 HOH HOH . 
K 5 HOH A 64 768 768 HOH HOH . 
K 5 HOH A 65 769 769 HOH HOH . 
K 5 HOH A 66 770 770 HOH HOH . 
K 5 HOH A 67 771 771 HOH HOH . 
K 5 HOH A 68 772 772 HOH HOH . 
K 5 HOH A 69 773 773 HOH HOH . 
K 5 HOH A 70 774 774 HOH HOH . 
K 5 HOH A 71 775 775 HOH HOH . 
K 5 HOH A 72 776 776 HOH HOH . 
K 5 HOH A 73 777 777 HOH HOH . 
K 5 HOH A 74 778 778 HOH HOH . 
K 5 HOH A 75 779 779 HOH HOH . 
K 5 HOH A 76 780 780 HOH HOH . 
K 5 HOH A 77 781 781 HOH HOH . 
K 5 HOH A 78 782 782 HOH HOH . 
K 5 HOH A 79 783 783 HOH HOH . 
K 5 HOH A 80 784 784 HOH HOH . 
K 5 HOH A 81 785 785 HOH HOH . 
K 5 HOH A 82 786 786 HOH HOH . 
K 5 HOH A 83 787 787 HOH HOH . 
K 5 HOH A 84 788 788 HOH HOH . 
K 5 HOH A 85 789 789 HOH HOH . 
K 5 HOH A 86 790 790 HOH HOH . 
K 5 HOH A 87 791 791 HOH HOH . 
K 5 HOH A 88 792 792 HOH HOH . 
K 5 HOH A 89 793 793 HOH HOH . 
K 5 HOH A 90 794 794 HOH HOH . 
K 5 HOH A 91 795 795 HOH HOH . 
K 5 HOH A 92 796 796 HOH HOH . 
K 5 HOH A 93 797 797 HOH HOH . 
K 5 HOH A 94 798 798 HOH HOH . 
K 5 HOH A 95 799 799 HOH HOH . 
K 5 HOH A 96 800 800 HOH HOH . 
K 5 HOH A 97 801 801 HOH HOH . 
K 5 HOH A 98 802 802 HOH HOH . 
K 5 HOH A 99 803 803 HOH HOH . 
K 5 HOH A 100 804 804 HOH HOH . 
K 5 HOH A 101 805 805 HOH HOH . 
K 5 HOH A 102 806 806 HOH HOH . 
K 5 HOH A 103 807 807 HOH HOH . 
K 5 HOH A 104 808 808 HOH HOH . 
K 5 HOH A 105 809 809 HOH HOH . 
K 5 HOH A 106 810 810 HOH HOH . 
K 5 HOH A 107 811 811 HOH HOH . 
K 5 HOH A 108 812 812 HOH HOH . 
K 5 HOH A 109 813 813 HOH HOH . 
K 5 HOH A 110 814 814 HOH HOH . 
K 5 HOH A 111 815 815 HOH HOH . 
K 5 HOH A 112 816 816 HOH HOH . 
K 5 HOH A 113 817 817 HOH HOH . 
K 5 HOH A 114 818 818 HOH HOH . 
K 5 HOH A 115 819 819 HOH HOH . 
K 5 HOH A 116 820 820 HOH HOH . 
K 5 HOH A 117 821 821 HOH HOH . 
K 5 HOH A 118 822 822 HOH HOH . 
K 5 HOH A 119 823 823 HOH HOH . 
K 5 HOH A 120 824 824 HOH HOH . 
K 5 HOH A 121 825 825 HOH HOH . 
K 5 HOH A 122 826 826 HOH HOH . 
K 5 HOH A 123 827 827 HOH HOH . 
K 5 HOH A 124 828 828 HOH HOH . 
K 5 HOH A 125 829 829 HOH HOH . 
K 5 HOH A 126 830 830 HOH HOH . 
K 5 HOH A 127 831 831 HOH HOH . 
K 5 HOH A 128 832 832 HOH HOH . 
K 5 HOH A 129 833 833 HOH HOH . 
K 5 HOH A 130 834 834 HOH HOH . 
K 5 HOH A 131 835 835 HOH HOH . 
K 5 HOH A 132 836 836 HOH HOH . 
K 5 HOH A 133 837 837 HOH HOH . 
K 5 HOH A 134 838 838 HOH HOH . 
K 5 HOH A 135 839 839 HOH HOH . 
K 5 HOH A 136 840 840 HOH HOH . 
K 5 HOH A 137 841 841 HOH HOH . 
K 5 HOH A 138 842 842 HOH HOH . 
K 5 HOH A 139 843 843 HOH HOH . 
K 5 HOH A 140 844 844 HOH HOH . 
K 5 HOH A 141 845 845 HOH HOH . 
K 5 HOH A 142 846 846 HOH HOH . 
K 5 HOH A 143 847 847 HOH HOH . 
K 5 HOH A 144 848 848 HOH HOH . 
K 5 HOH A 145 849 849 HOH HOH . 
K 5 HOH A 146 850 850 HOH HOH . 
K 5 HOH A 147 851 851 HOH HOH . 
K 5 HOH A 148 852 852 HOH HOH . 
K 5 HOH A 149 853 853 HOH HOH . 
K 5 HOH A 150 854 854 HOH HOH . 
K 5 HOH A 151 855 855 HOH HOH . 
K 5 HOH A 152 856 856 HOH HOH . 
K 5 HOH A 153 857 857 HOH HOH . 
K 5 HOH A 154 858 858 HOH HOH . 
K 5 HOH A 155 859 859 HOH HOH . 
K 5 HOH A 156 860 860 HOH HOH . 
K 5 HOH A 157 861 861 HOH HOH . 
K 5 HOH A 158 862 862 HOH HOH . 
K 5 HOH A 159 863 863 HOH HOH . 
K 5 HOH A 160 864 864 HOH HOH . 
K 5 HOH A 161 865 865 HOH HOH . 
K 5 HOH A 162 866 866 HOH HOH . 
K 5 HOH A 163 867 867 HOH HOH . 
K 5 HOH A 164 868 868 HOH HOH . 
K 5 HOH A 165 869 869 HOH HOH . 
K 5 HOH A 166 870 870 HOH HOH . 
K 5 HOH A 167 871 871 HOH HOH . 
K 5 HOH A 168 872 872 HOH HOH . 
K 5 HOH A 169 873 873 HOH HOH . 
K 5 HOH A 170 874 874 HOH HOH . 
K 5 HOH A 171 875 875 HOH HOH . 
K 5 HOH A 172 876 876 HOH HOH . 
K 5 HOH A 173 877 877 HOH HOH . 
K 5 HOH A 174 878 878 HOH HOH . 
K 5 HOH A 175 879 879 HOH HOH . 
K 5 HOH A 176 880 880 HOH HOH . 
K 5 HOH A 177 881 881 HOH HOH . 
K 5 HOH A 178 882 882 HOH HOH . 
K 5 HOH A 179 883 883 HOH HOH . 
K 5 HOH A 180 884 884 HOH HOH . 
K 5 HOH A 181 885 885 HOH HOH . 
K 5 HOH A 182 886 886 HOH HOH . 
K 5 HOH A 183 887 887 HOH HOH . 
K 5 HOH A 184 888 888 HOH HOH . 
K 5 HOH A 185 889 889 HOH HOH . 
K 5 HOH A 186 890 890 HOH HOH . 
K 5 HOH A 187 891 891 HOH HOH . 
K 5 HOH A 188 892 892 HOH HOH . 
K 5 HOH A 189 893 893 HOH HOH . 
K 5 HOH A 190 894 894 HOH HOH . 
K 5 HOH A 191 895 895 HOH HOH . 
K 5 HOH A 192 896 896 HOH HOH . 
K 5 HOH A 193 897 897 HOH HOH . 
K 5 HOH A 194 898 898 HOH HOH . 
K 5 HOH A 195 899 899 HOH HOH . 
K 5 HOH A 196 900 900 HOH HOH . 
K 5 HOH A 197 901 901 HOH HOH . 
K 5 HOH A 198 902 902 HOH HOH . 
K 5 HOH A 199 903 903 HOH HOH . 
K 5 HOH A 200 904 904 HOH HOH . 
K 5 HOH A 201 905 905 HOH HOH . 
K 5 HOH A 202 906 906 HOH HOH . 
K 5 HOH A 203 907 907 HOH HOH . 
K 5 HOH A 204 908 908 HOH HOH . 
K 5 HOH A 205 909 909 HOH HOH . 
K 5 HOH A 206 910 910 HOH HOH . 
K 5 HOH A 207 911 911 HOH HOH . 
K 5 HOH A 208 912 912 HOH HOH . 
K 5 HOH A 209 913 913 HOH HOH . 
K 5 HOH A 210 914 914 HOH HOH . 
K 5 HOH A 211 915 915 HOH HOH . 
K 5 HOH A 212 916 916 HOH HOH . 
K 5 HOH A 213 917 917 HOH HOH . 
K 5 HOH A 214 918 918 HOH HOH . 
K 5 HOH A 215 919 919 HOH HOH . 
K 5 HOH A 216 920 920 HOH HOH . 
K 5 HOH A 217 921 921 HOH HOH . 
K 5 HOH A 218 922 922 HOH HOH . 
K 5 HOH A 219 923 923 HOH HOH . 
K 5 HOH A 220 924 924 HOH HOH . 
K 5 HOH A 221 925 925 HOH HOH . 
K 5 HOH A 222 926 926 HOH HOH . 
K 5 HOH A 223 927 927 HOH HOH . 
K 5 HOH A 224 928 928 HOH HOH . 
K 5 HOH A 225 929 929 HOH HOH . 
K 5 HOH A 226 930 930 HOH HOH . 
K 5 HOH A 227 931 931 HOH HOH . 
K 5 HOH A 228 932 932 HOH HOH . 
K 5 HOH A 229 933 933 HOH HOH . 
K 5 HOH A 230 934 934 HOH HOH . 
K 5 HOH A 231 935 935 HOH HOH . 
K 5 HOH A 232 936 936 HOH HOH . 
K 5 HOH A 233 937 937 HOH HOH . 
K 5 HOH A 234 938 938 HOH HOH . 
K 5 HOH A 235 939 939 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . H 4 52.465 -7.876 8.576 1 38.45 ? C1 EDO 702 A 1 
HETATM 2 O O1 EDO . . . H 4 51.067 -7.746 8.82 1 41.55 ? O1 EDO 702 A 1 
HETATM 3 C C2 EDO . . . H 4 53.006 -6.532 8.014 1 39.7 ? C2 EDO 702 A 1 
HETATM 4 O O2 EDO . . . H 4 52.188 -6.1 6.935 1 43.92 ? O2 EDO 702 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           476 
_model_server_stats.encode_time_ms          16 
_model_server_stats.element_count           4 
#