data_3EE2 # _model_server_result.job_id x_RS9dMroA9XLLPiFRTGWQ _model_server_result.datetime_utc '2025-01-27 14:40:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ee2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":200}' # _entry.id 3EE2 # _exptl.entry_id 3EE2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 307.323 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLUTATHIONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3EE2 _cell.length_a 47.22 _cell.length_b 79.359 _cell.length_c 107.547 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EE2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 E MG MG . B MG 300 1_555 G O HOH . B HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc2 E MG MG . B MG 300 1_555 G O HOH . B HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc3 E MG MG . B MG 300 1_555 G O HOH . B HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc4 E MG MG . B MG 300 1_555 H O HOH . B HOH 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc5 E MG MG . B MG 300 1_555 H O HOH . B HOH 370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc6 E MG MG . B MG 300 1_555 H O HOH . B HOH 371 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? # _chem_comp.formula 'C10 H17 N3 O6 S' _chem_comp.formula_weight 307.323 _chem_comp.id GSH _chem_comp.mon_nstd_flag . _chem_comp.name GLUTATHIONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 CA1 GSH sing 129 n n N1 HN11 GSH sing 130 n n N1 HN12 GSH sing 131 n n CA1 C1 GSH sing 132 n n CA1 CB1 GSH sing 133 n n CA1 HA1 GSH sing 134 n n C1 O11 GSH doub 135 n n C1 O12 GSH sing 136 n n O12 H12 GSH sing 137 n n CB1 CG1 GSH sing 138 n n CB1 HB12 GSH sing 139 n n CB1 HB13 GSH sing 140 n n CG1 CD1 GSH sing 141 n n CG1 HG12 GSH sing 142 n n CG1 HG13 GSH sing 143 n n CD1 OE1 GSH doub 144 n n CD1 N2 GSH sing 145 n n N2 CA2 GSH sing 146 n n N2 HN2 GSH sing 147 n n CA2 C2 GSH sing 148 n n CA2 CB2 GSH sing 149 n n CA2 HA2 GSH sing 150 n n C2 O2 GSH doub 151 n n C2 N3 GSH sing 152 n n CB2 SG2 GSH sing 153 n n CB2 HB22 GSH sing 154 n n CB2 HB23 GSH sing 155 n n SG2 HSG GSH sing 156 n n N3 CA3 GSH sing 157 n n N3 HN3 GSH sing 158 n n CA3 C3 GSH sing 159 n n CA3 HA31 GSH sing 160 n n CA3 HA32 GSH sing 161 n n C3 O31 GSH doub 162 n n C3 O32 GSH sing 163 n n O32 H32 GSH sing 164 n n # _atom_sites.entry_id 3EE2 _atom_sites.fract_transf_matrix[1][1] 0.021177 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012601 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009298 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GSH A 1 200 200 GSH GTT . D 3 NZO A 1 201 201 NZO NZO . E 4 MG B 1 300 300 MG MO6 . F 5 HOH A 1 202 2 HOH HOH . F 5 HOH A 2 203 4 HOH HOH . F 5 HOH A 3 204 5 HOH HOH . F 5 HOH A 4 205 6 HOH HOH . F 5 HOH A 5 206 7 HOH HOH . F 5 HOH A 6 207 8 HOH HOH . F 5 HOH A 7 208 9 HOH HOH . F 5 HOH A 8 209 10 HOH HOH . F 5 HOH A 9 210 11 HOH HOH . F 5 HOH A 10 211 12 HOH HOH . F 5 HOH A 11 212 13 HOH HOH . F 5 HOH A 12 213 14 HOH HOH . F 5 HOH A 13 214 15 HOH HOH . F 5 HOH A 14 215 17 HOH HOH . F 5 HOH A 15 216 19 HOH HOH . F 5 HOH A 16 217 20 HOH HOH . F 5 HOH A 17 218 24 HOH HOH . F 5 HOH A 18 219 26 HOH HOH . F 5 HOH A 19 220 28 HOH HOH . F 5 HOH A 20 221 29 HOH HOH . F 5 HOH A 21 222 30 HOH HOH . F 5 HOH A 22 223 31 HOH HOH . F 5 HOH A 23 224 34 HOH HOH . F 5 HOH A 24 225 35 HOH HOH . F 5 HOH A 25 226 38 HOH HOH . F 5 HOH A 26 227 40 HOH HOH . F 5 HOH A 27 228 42 HOH HOH . F 5 HOH A 28 229 43 HOH HOH . F 5 HOH A 29 230 47 HOH HOH . F 5 HOH A 30 231 48 HOH HOH . F 5 HOH A 31 232 49 HOH HOH . F 5 HOH A 32 233 51 HOH HOH . F 5 HOH A 33 234 53 HOH HOH . F 5 HOH A 34 235 54 HOH HOH . F 5 HOH A 35 236 55 HOH HOH . F 5 HOH A 36 237 56 HOH HOH . F 5 HOH A 37 238 57 HOH HOH . F 5 HOH A 38 239 58 HOH HOH . F 5 HOH A 39 240 59 HOH HOH . F 5 HOH A 40 241 60 HOH HOH . F 5 HOH A 41 242 61 HOH HOH . F 5 HOH A 42 243 62 HOH HOH . F 5 HOH A 43 244 63 HOH HOH . F 5 HOH A 44 245 65 HOH HOH . F 5 HOH A 45 246 68 HOH HOH . F 5 HOH A 46 247 69 HOH HOH . F 5 HOH A 47 248 72 HOH HOH . F 5 HOH A 48 249 73 HOH HOH . F 5 HOH A 49 250 74 HOH HOH . F 5 HOH A 50 251 78 HOH HOH . F 5 HOH A 51 252 79 HOH HOH . F 5 HOH A 52 253 80 HOH HOH . F 5 HOH A 53 254 81 HOH HOH . F 5 HOH A 54 255 82 HOH HOH . F 5 HOH A 55 256 83 HOH HOH . F 5 HOH A 56 257 86 HOH HOH . F 5 HOH A 57 258 87 HOH HOH . F 5 HOH A 58 259 88 HOH HOH . F 5 HOH A 59 260 90 HOH HOH . F 5 HOH A 60 261 93 HOH HOH . F 5 HOH A 61 262 95 HOH HOH . F 5 HOH A 62 263 96 HOH HOH . F 5 HOH A 63 264 97 HOH HOH . F 5 HOH A 64 265 98 HOH HOH . F 5 HOH A 65 266 99 HOH HOH . F 5 HOH A 66 267 100 HOH HOH . F 5 HOH A 67 268 101 HOH HOH . F 5 HOH A 68 269 102 HOH HOH . F 5 HOH A 69 270 106 HOH HOH . F 5 HOH A 70 271 110 HOH HOH . F 5 HOH A 71 272 111 HOH HOH . F 5 HOH A 72 273 112 HOH HOH . F 5 HOH A 73 274 113 HOH HOH . F 5 HOH A 74 275 114 HOH HOH . F 5 HOH A 75 276 115 HOH HOH . F 5 HOH A 76 277 116 HOH HOH . F 5 HOH A 77 278 119 HOH HOH . F 5 HOH A 78 279 121 HOH HOH . F 5 HOH A 79 280 122 HOH HOH . F 5 HOH A 80 281 124 HOH HOH . F 5 HOH A 81 282 126 HOH HOH . F 5 HOH A 82 283 128 HOH HOH . F 5 HOH A 83 284 130 HOH HOH . F 5 HOH A 84 285 136 HOH HOH . F 5 HOH A 85 286 138 HOH HOH . F 5 HOH A 86 287 139 HOH HOH . F 5 HOH A 87 288 140 HOH HOH . F 5 HOH A 88 289 141 HOH HOH . F 5 HOH A 89 290 142 HOH HOH . F 5 HOH A 90 291 143 HOH HOH . F 5 HOH A 91 292 145 HOH HOH . F 5 HOH A 92 293 146 HOH HOH . F 5 HOH A 93 294 147 HOH HOH . F 5 HOH A 94 295 150 HOH HOH . F 5 HOH A 95 296 152 HOH HOH . F 5 HOH A 96 297 154 HOH HOH . F 5 HOH A 97 298 156 HOH HOH . F 5 HOH A 98 299 159 HOH HOH . F 5 HOH A 99 300 160 HOH HOH . F 5 HOH A 100 301 161 HOH HOH . F 5 HOH A 101 302 162 HOH HOH . F 5 HOH A 102 303 163 HOH HOH . F 5 HOH A 103 304 164 HOH HOH . F 5 HOH A 104 305 167 HOH HOH . F 5 HOH A 105 306 168 HOH HOH . F 5 HOH A 106 307 169 HOH HOH . F 5 HOH A 107 308 170 HOH HOH . F 5 HOH A 108 309 171 HOH HOH . F 5 HOH A 109 310 172 HOH HOH . G 5 HOH B 1 301 301 HOH MO6 . G 5 HOH B 2 302 303 HOH MO6 . G 5 HOH B 3 303 304 HOH MO6 . G 5 HOH B 4 304 3 HOH HOH . G 5 HOH B 5 305 16 HOH HOH . G 5 HOH B 6 306 18 HOH HOH . G 5 HOH B 7 307 21 HOH HOH . G 5 HOH B 8 308 22 HOH HOH . G 5 HOH B 9 309 23 HOH HOH . G 5 HOH B 10 310 25 HOH HOH . G 5 HOH B 11 311 27 HOH HOH . G 5 HOH B 12 312 32 HOH HOH . G 5 HOH B 13 313 33 HOH HOH . G 5 HOH B 14 314 36 HOH HOH . G 5 HOH B 15 315 37 HOH HOH . G 5 HOH B 16 316 39 HOH HOH . G 5 HOH B 17 317 41 HOH HOH . G 5 HOH B 18 318 44 HOH HOH . G 5 HOH B 19 319 45 HOH HOH . G 5 HOH B 20 320 46 HOH HOH . G 5 HOH B 21 321 50 HOH HOH . G 5 HOH B 22 322 52 HOH HOH . G 5 HOH B 23 323 64 HOH HOH . G 5 HOH B 24 324 66 HOH HOH . G 5 HOH B 25 325 67 HOH HOH . G 5 HOH B 26 326 70 HOH HOH . G 5 HOH B 27 327 71 HOH HOH . G 5 HOH B 28 328 75 HOH HOH . G 5 HOH B 29 329 76 HOH HOH . G 5 HOH B 30 330 77 HOH HOH . G 5 HOH B 31 331 84 HOH HOH . G 5 HOH B 32 332 85 HOH HOH . G 5 HOH B 33 333 89 HOH HOH . G 5 HOH B 34 334 91 HOH HOH . G 5 HOH B 35 335 92 HOH HOH . G 5 HOH B 36 336 94 HOH HOH . G 5 HOH B 37 337 103 HOH HOH . G 5 HOH B 38 338 104 HOH HOH . G 5 HOH B 39 339 105 HOH HOH . G 5 HOH B 40 340 107 HOH HOH . G 5 HOH B 41 341 108 HOH HOH . G 5 HOH B 42 342 109 HOH HOH . G 5 HOH B 43 343 117 HOH HOH . G 5 HOH B 44 344 118 HOH HOH . G 5 HOH B 45 345 120 HOH HOH . G 5 HOH B 46 346 123 HOH HOH . G 5 HOH B 47 347 125 HOH HOH . G 5 HOH B 48 348 127 HOH HOH . G 5 HOH B 49 349 129 HOH HOH . G 5 HOH B 50 350 131 HOH HOH . G 5 HOH B 51 351 132 HOH HOH . G 5 HOH B 52 352 133 HOH HOH . G 5 HOH B 53 353 134 HOH HOH . G 5 HOH B 54 354 135 HOH HOH . G 5 HOH B 55 355 137 HOH HOH . G 5 HOH B 56 356 144 HOH HOH . G 5 HOH B 57 357 148 HOH HOH . G 5 HOH B 58 358 149 HOH HOH . G 5 HOH B 59 359 151 HOH HOH . G 5 HOH B 60 360 153 HOH HOH . G 5 HOH B 61 361 155 HOH HOH . G 5 HOH B 62 362 157 HOH HOH . G 5 HOH B 63 363 158 HOH HOH . G 5 HOH B 64 364 165 HOH HOH . G 5 HOH B 65 365 166 HOH HOH . G 5 HOH B 66 366 173 HOH HOH . G 5 HOH B 67 367 174 HOH HOH . G 5 HOH B 68 368 175 HOH HOH . H 5 HOH B 1 369 302 HOH MO6 . H 5 HOH B 2 370 305 HOH MO6 . H 5 HOH B 3 371 306 HOH MO6 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 GSH . . . C 2 25.208 3.397 40.507 1 34.27 ? N1 GSH 200 A 1 HETATM 2 C CA1 GSH . . . C 2 25.974 4.646 40.321 1 36.27 ? CA1 GSH 200 A 1 HETATM 3 C C1 GSH . . . C 2 26.553 5.127 41.636 1 33.11 ? C1 GSH 200 A 1 HETATM 4 O O11 GSH . . . C 2 27.611 5.774 41.696 1 25.68 ? O11 GSH 200 A 1 HETATM 5 O O12 GSH . . . C 2 25.956 4.875 42.694 1 33.81 ? O12 GSH 200 A 1 HETATM 6 C CB1 GSH . . . C 2 25.074 5.739 39.763 1 38.01 ? CB1 GSH 200 A 1 HETATM 7 C CG1 GSH . . . C 2 25.935 6.857 39.194 1 41.19 ? CG1 GSH 200 A 1 HETATM 8 C CD1 GSH . . . C 2 25.059 7.898 38.523 1 39.9 ? CD1 GSH 200 A 1 HETATM 9 O OE1 GSH . . . C 2 24.206 7.507 37.479 1 41.54 ? OE1 GSH 200 A 1 HETATM 10 N N2 GSH . . . C 2 25.144 9.177 38.906 1 39.13 ? N2 GSH 200 A 1 HETATM 11 C CA2 GSH . . . C 2 24.368 10.216 38.224 1 40.96 ? CA2 GSH 200 A 1 HETATM 12 C C2 GSH . . . C 2 25.123 10.866 37.083 1 38.21 ? C2 GSH 200 A 1 HETATM 13 O O2 GSH . . . C 2 26.516 10.994 37.099 1 30.32 ? O2 GSH 200 A 1 HETATM 14 C CB2 GSH . . . C 2 23.827 11.254 39.227 1 43.95 ? CB2 GSH 200 A 1 HETATM 15 S SG2 GSH . . . C 2 23.286 10.427 40.759 1 46.63 ? SG2 GSH 200 A 1 HETATM 16 N N3 GSH . . . C 2 24.405 11.306 36.064 1 41.15 ? N3 GSH 200 A 1 HETATM 17 C CA3 GSH . . . C 2 24.886 12.42 35.253 1 43.93 ? CA3 GSH 200 A 1 HETATM 18 C C3 GSH . . . C 2 25.217 11.936 33.858 1 47.52 ? C3 GSH 200 A 1 HETATM 19 O O31 GSH . . . C 2 25.684 12.701 32.951 1 45.37 ? O31 GSH 200 A 1 HETATM 20 O O32 GSH . . . C 2 25.029 10.723 33.625 1 49.13 ? O32 GSH 200 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 20 #