data_3EE6 # _model_server_result.job_id JbU2xZ3gIw6RzSoymXtaTg _model_server_result.datetime_utc '2024-11-25 18:35:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ee6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":576}' # _entry.id 3EE6 # _exptl.entry_id 3EE6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3EE6 _cell.length_a 113.45 _cell.length_b 128.93 _cell.length_c 100.5 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EE6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_755 -x+2,-y,z -1 0 0 0 -1 0 0 0 1 226.9 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 R N N ? 3 S N N ? 3 T N N ? 3 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 111 A CYS 111 1_555 A SG CYS 122 A CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf2 A SG CYS 365 A CYS 365 1_555 A SG CYS 526 A CYS 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf3 A SG CYS 522 A CYS 522 1_555 A SG CYS 537 A CYS 537 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf4 B SG CYS 111 B CYS 111 1_555 B SG CYS 122 B CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf5 B SG CYS 365 B CYS 365 1_555 B SG CYS 526 B CYS 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf6 B SG CYS 522 B CYS 522 1_555 B SG CYS 537 B CYS 537 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? covale ? covale1 A ND2 ASN 210 A ASN 210 1_555 C C4 NAG . A NAG 572 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.301 ? covale ? covale2 A ND2 ASN 286 A ASN 286 1_555 D C4 NAG . A NAG 573 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale3 A ND2 ASN 313 A ASN 313 1_555 E C4 NAG . A NAG 574 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.302 ? covale ? covale4 A ND2 ASN 443 A ASN 443 1_555 F C4 NAG . A NAG 575 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.29 ? covale ? covale5 B ND2 ASN 210 B ASN 210 1_555 N C4 NAG . B NAG 572 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.305 ? covale ? covale6 B ND2 ASN 286 B ASN 286 1_555 O C4 NAG . B NAG 573 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.309 ? covale ? covale7 B ND2 ASN 313 B ASN 313 1_555 P C4 NAG . B NAG 574 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale8 B ND2 ASN 443 B ASN 443 1_555 Q C4 NAG . B NAG 575 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.305 ? metalc ? metalc1 A OE1 GLU 45 A GLU 45 1_555 I ZN ZN . A ZN 578 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc2 A OE2 GLU 137 A GLU 137 1_555 H ZN ZN . A ZN 577 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.815 ? metalc ? metalc3 A NE2 HIS 155 A HIS 155 1_555 H ZN ZN . A ZN 577 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc4 A OD2 ASP 457 A ASP 457 1_555 G ZN ZN . A ZN 576 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc5 A NE2 HIS 511 A HIS 511 1_555 J ZN ZN . A ZN 579 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.887 ? metalc ? metalc6 A OD1 ASP 517 A ASP 517 1_555 L CA CA . A CA 581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? metalc ? metalc7 A O VAL 518 A VAL 518 1_555 L CA CA . A CA 581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc8 A OE1 GLU 529 A GLU 529 1_555 S ZN ZN . B ZN 577 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc9 A O GLY 539 A GLY 539 1_555 L CA CA . A CA 581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc10 A O GLY 541 A GLY 541 1_555 L CA CA . A CA 581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc11 A OD1 ASP 543 A ASP 543 1_555 L CA CA . A CA 581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? metalc ? metalc12 G ZN ZN . A ZN 576 1_555 B OE1 GLU 529 B GLU 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc13 L CA CA . A CA 581 1_555 Y O HOH . A HOH 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc14 B OE1 GLU 137 B GLU 137 1_555 R ZN ZN . B ZN 576 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc15 B OE2 GLU 137 B GLU 137 1_555 R ZN ZN . B ZN 576 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc16 B ND1 HIS 197 B HIS 197 1_555 S ZN ZN . B ZN 577 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc17 B OE2 GLU 424 B GLU 424 1_555 U ZN ZN . B ZN 579 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc18 B OD2 ASP 457 B ASP 457 1_555 S ZN ZN . B ZN 577 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc19 B NE2 HIS 511 B HIS 511 1_555 U ZN ZN . B ZN 579 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? metalc ? metalc20 B OD1 ASP 517 B ASP 517 1_555 W CA CA . B CA 581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc21 B O VAL 518 B VAL 518 1_555 W CA CA . B CA 581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc22 B O GLY 539 B GLY 539 1_555 W CA CA . B CA 581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc23 B O GLY 541 B GLY 541 1_555 W CA CA . B CA 581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc24 B OD1 ASP 543 B ASP 543 1_555 W CA CA . B CA 581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? metalc ? metalc25 W CA CA . B CA 581 1_555 Z O HOH . B HOH 634 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3EE6 _atom_sites.fract_transf_matrix[1][1] 0.008814 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007756 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00995 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAG A 1 572 572 NAG NAG . D 2 NAG A 1 573 573 NAG NAG . E 2 NAG A 1 574 574 NAG NAG . F 2 NAG A 1 575 575 NAG NAG . G 3 ZN A 1 576 576 ZN ZN . H 3 ZN A 1 577 577 ZN ZN . I 3 ZN A 1 578 578 ZN ZN . J 3 ZN A 1 579 579 ZN ZN . K 4 CL A 1 580 580 CL CL . L 5 CA A 1 581 581 CA CA . M 6 SO4 A 1 582 582 SO4 SO4 . N 2 NAG B 1 572 572 NAG NAG . O 2 NAG B 1 573 573 NAG NAG . P 2 NAG B 1 574 574 NAG NAG . Q 2 NAG B 1 575 575 NAG NAG . R 3 ZN B 1 576 576 ZN ZN . S 3 ZN B 1 577 577 ZN ZN . T 3 ZN B 1 578 578 ZN ZN . U 3 ZN B 1 579 579 ZN ZN . V 4 CL B 1 580 580 CL CL . W 5 CA B 1 581 581 CA CA . X 6 SO4 B 1 582 582 SO4 SO4 . Y 7 HOH A 1 583 583 HOH HOH . Y 7 HOH A 2 584 584 HOH HOH . Y 7 HOH A 3 585 585 HOH HOH . Y 7 HOH A 4 586 586 HOH HOH . Y 7 HOH A 5 587 587 HOH HOH . Y 7 HOH A 6 588 588 HOH HOH . Y 7 HOH A 7 589 589 HOH HOH . Y 7 HOH A 8 590 590 HOH HOH . Y 7 HOH A 9 591 591 HOH HOH . Y 7 HOH A 10 592 592 HOH HOH . Y 7 HOH A 11 593 593 HOH HOH . Y 7 HOH A 12 594 594 HOH HOH . Y 7 HOH A 13 595 595 HOH HOH . Y 7 HOH A 14 596 596 HOH HOH . Y 7 HOH A 15 597 597 HOH HOH . Y 7 HOH A 16 598 598 HOH HOH . Y 7 HOH A 17 599 599 HOH HOH . Y 7 HOH A 18 600 600 HOH HOH . Y 7 HOH A 19 601 601 HOH HOH . Y 7 HOH A 20 602 602 HOH HOH . Y 7 HOH A 21 603 603 HOH HOH . Y 7 HOH A 22 604 604 HOH HOH . Y 7 HOH A 23 605 605 HOH HOH . Y 7 HOH A 24 606 606 HOH HOH . Y 7 HOH A 25 607 607 HOH HOH . Y 7 HOH A 26 608 608 HOH HOH . Y 7 HOH A 27 609 609 HOH HOH . Y 7 HOH A 28 610 610 HOH HOH . Y 7 HOH A 29 611 611 HOH HOH . Y 7 HOH A 30 612 612 HOH HOH . Y 7 HOH A 31 613 613 HOH HOH . Y 7 HOH A 32 614 614 HOH HOH . Y 7 HOH A 33 615 615 HOH HOH . Y 7 HOH A 34 616 616 HOH HOH . Y 7 HOH A 35 617 617 HOH HOH . Y 7 HOH A 36 618 618 HOH HOH . Z 7 HOH B 1 583 583 HOH HOH . Z 7 HOH B 2 584 584 HOH HOH . Z 7 HOH B 3 585 585 HOH HOH . Z 7 HOH B 4 586 586 HOH HOH . Z 7 HOH B 5 603 603 HOH HOH . Z 7 HOH B 6 606 606 HOH HOH . Z 7 HOH B 7 607 607 HOH HOH . Z 7 HOH B 8 608 608 HOH HOH . Z 7 HOH B 9 609 609 HOH HOH . Z 7 HOH B 10 610 610 HOH HOH . Z 7 HOH B 11 611 611 HOH HOH . Z 7 HOH B 12 612 612 HOH HOH . Z 7 HOH B 13 613 613 HOH HOH . Z 7 HOH B 14 614 614 HOH HOH . Z 7 HOH B 15 615 615 HOH HOH . Z 7 HOH B 16 616 616 HOH HOH . Z 7 HOH B 17 617 617 HOH HOH . Z 7 HOH B 18 618 618 HOH HOH . Z 7 HOH B 19 619 619 HOH HOH . Z 7 HOH B 20 620 620 HOH HOH . Z 7 HOH B 21 621 621 HOH HOH . Z 7 HOH B 22 622 622 HOH HOH . Z 7 HOH B 23 623 623 HOH HOH . Z 7 HOH B 24 624 624 HOH HOH . Z 7 HOH B 25 625 625 HOH HOH . Z 7 HOH B 26 626 626 HOH HOH . Z 7 HOH B 27 627 627 HOH HOH . Z 7 HOH B 28 628 628 HOH HOH . Z 7 HOH B 29 629 629 HOH HOH . Z 7 HOH B 30 630 630 HOH HOH . Z 7 HOH B 31 631 631 HOH HOH . Z 7 HOH B 32 632 632 HOH HOH . Z 7 HOH B 33 633 633 HOH HOH . Z 7 HOH B 34 634 634 HOH HOH . Z 7 HOH B 35 635 635 HOH HOH . Z 7 HOH B 36 643 643 HOH HOH . Z 7 HOH B 37 645 645 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id R _atom_site.label_entity_id 3 _atom_site.Cartn_x 114.285 _atom_site.Cartn_y -0.502 _atom_site.Cartn_z 92.23 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 87.14 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 576 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #