data_3EEB
#
_model_server_result.job_id            LyXvSiKmMjQ6Ae_1AkQ1qA 
_model_server_result.datetime_utc      '2024-11-22 21:09:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3eeb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":211}' 
#
_entry.id    3EEB 
#
_exptl.entry_id    3EEB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3EEB 
_cell.length_a            44.491 
_cell.length_b            66.099 
_cell.length_c            136.051 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3EEB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O GLU 27 A GLU 27 1_555 D NA NA . A NA 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? 
metalc ? metalc2 C O31 IHP . A IHP 210 1_555 D NA NA . A NA 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? 
metalc ? metalc3 D NA NA . A NA 211 1_555 G O HOH . A HOH 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? 
metalc ? metalc4 D NA NA . A NA 211 1_555 G O HOH . A HOH 286 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? 
metalc ? metalc5 B O GLU 27 B GLU 27 1_555 F NA NA . B NA 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? 
metalc ? metalc6 E O31 IHP . B IHP 210 1_555 F NA NA . B NA 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
metalc ? metalc7 E O32 IHP . B IHP 210 1_555 F NA NA . B NA 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? 
metalc ? metalc8 F NA NA . B NA 211 1_555 H O HOH . B HOH 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? 
metalc ? metalc9 F NA NA . B NA 211 1_555 H O HOH . B HOH 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3EEB 
_atom_sites.fract_transf_matrix[1][1]    0.022476 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015129 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00735 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 IHP A 1 210 1 IHP IHP . 
D 3 NA A 1 211 1 NA NA . 
E 2 IHP B 1 210 1 IHP IHP . 
F 3 NA B 1 211 1 NA NA . 
G 4 HOH A 1 212 1 HOH HOH . 
G 4 HOH A 2 213 3 HOH HOH . 
G 4 HOH A 3 214 5 HOH HOH . 
G 4 HOH A 4 215 8 HOH HOH . 
G 4 HOH A 5 216 11 HOH HOH . 
G 4 HOH A 6 217 22 HOH HOH . 
G 4 HOH A 7 218 23 HOH HOH . 
G 4 HOH A 8 219 24 HOH HOH . 
G 4 HOH A 9 220 25 HOH HOH . 
G 4 HOH A 10 221 30 HOH HOH . 
G 4 HOH A 11 222 31 HOH HOH . 
G 4 HOH A 12 223 35 HOH HOH . 
G 4 HOH A 13 224 39 HOH HOH . 
G 4 HOH A 14 225 40 HOH HOH . 
G 4 HOH A 15 226 42 HOH HOH . 
G 4 HOH A 16 227 45 HOH HOH . 
G 4 HOH A 17 228 47 HOH HOH . 
G 4 HOH A 18 229 49 HOH HOH . 
G 4 HOH A 19 230 51 HOH HOH . 
G 4 HOH A 20 231 53 HOH HOH . 
G 4 HOH A 21 232 54 HOH HOH . 
G 4 HOH A 22 233 55 HOH HOH . 
G 4 HOH A 23 234 57 HOH HOH . 
G 4 HOH A 24 235 58 HOH HOH . 
G 4 HOH A 25 236 59 HOH HOH . 
G 4 HOH A 26 237 60 HOH HOH . 
G 4 HOH A 27 238 65 HOH HOH . 
G 4 HOH A 28 239 66 HOH HOH . 
G 4 HOH A 29 240 67 HOH HOH . 
G 4 HOH A 30 241 69 HOH HOH . 
G 4 HOH A 31 242 71 HOH HOH . 
G 4 HOH A 32 243 73 HOH HOH . 
G 4 HOH A 33 244 74 HOH HOH . 
G 4 HOH A 34 245 77 HOH HOH . 
G 4 HOH A 35 246 79 HOH HOH . 
G 4 HOH A 36 247 82 HOH HOH . 
G 4 HOH A 37 248 83 HOH HOH . 
G 4 HOH A 38 249 87 HOH HOH . 
G 4 HOH A 39 250 90 HOH HOH . 
G 4 HOH A 40 251 91 HOH HOH . 
G 4 HOH A 41 252 94 HOH HOH . 
G 4 HOH A 42 253 95 HOH HOH . 
G 4 HOH A 43 254 98 HOH HOH . 
G 4 HOH A 44 255 99 HOH HOH . 
G 4 HOH A 45 256 106 HOH HOH . 
G 4 HOH A 46 257 107 HOH HOH . 
G 4 HOH A 47 258 112 HOH HOH . 
G 4 HOH A 48 259 113 HOH HOH . 
G 4 HOH A 49 260 118 HOH HOH . 
G 4 HOH A 50 261 120 HOH HOH . 
G 4 HOH A 51 262 121 HOH HOH . 
G 4 HOH A 52 263 125 HOH HOH . 
G 4 HOH A 53 264 126 HOH HOH . 
G 4 HOH A 54 265 134 HOH HOH . 
G 4 HOH A 55 266 136 HOH HOH . 
G 4 HOH A 56 267 137 HOH HOH . 
G 4 HOH A 57 268 138 HOH HOH . 
G 4 HOH A 58 269 139 HOH HOH . 
G 4 HOH A 59 270 140 HOH HOH . 
G 4 HOH A 60 271 141 HOH HOH . 
G 4 HOH A 61 272 142 HOH HOH . 
G 4 HOH A 62 273 143 HOH HOH . 
G 4 HOH A 63 274 144 HOH HOH . 
G 4 HOH A 64 275 145 HOH HOH . 
G 4 HOH A 65 276 146 HOH HOH . 
G 4 HOH A 66 277 148 HOH HOH . 
G 4 HOH A 67 278 149 HOH HOH . 
G 4 HOH A 68 279 150 HOH HOH . 
G 4 HOH A 69 280 151 HOH HOH . 
G 4 HOH A 70 281 152 HOH HOH . 
G 4 HOH A 71 282 158 HOH HOH . 
G 4 HOH A 72 283 159 HOH HOH . 
G 4 HOH A 73 284 163 HOH HOH . 
G 4 HOH A 74 285 164 HOH HOH . 
G 4 HOH A 75 286 165 HOH HOH . 
G 4 HOH A 76 287 166 HOH HOH . 
G 4 HOH A 77 288 167 HOH HOH . 
G 4 HOH A 78 289 172 HOH HOH . 
G 4 HOH A 79 290 173 HOH HOH . 
G 4 HOH A 80 291 174 HOH HOH . 
G 4 HOH A 81 292 175 HOH HOH . 
G 4 HOH A 82 293 176 HOH HOH . 
G 4 HOH A 83 294 177 HOH HOH . 
G 4 HOH A 84 295 178 HOH HOH . 
G 4 HOH A 85 296 179 HOH HOH . 
G 4 HOH A 86 297 180 HOH HOH . 
G 4 HOH A 87 298 181 HOH HOH . 
G 4 HOH A 88 299 182 HOH HOH . 
G 4 HOH A 89 300 183 HOH HOH . 
G 4 HOH A 90 301 184 HOH HOH . 
G 4 HOH A 91 302 185 HOH HOH . 
G 4 HOH A 92 303 186 HOH HOH . 
G 4 HOH A 93 304 187 HOH HOH . 
G 4 HOH A 94 305 188 HOH HOH . 
G 4 HOH A 95 306 204 HOH HOH . 
G 4 HOH A 96 307 205 HOH HOH . 
G 4 HOH A 97 308 206 HOH HOH . 
G 4 HOH A 98 309 207 HOH HOH . 
G 4 HOH A 99 310 208 HOH HOH . 
G 4 HOH A 100 311 209 HOH HOH . 
G 4 HOH A 101 312 210 HOH HOH . 
G 4 HOH A 102 313 219 HOH HOH . 
G 4 HOH A 103 314 220 HOH HOH . 
G 4 HOH A 104 315 221 HOH HOH . 
G 4 HOH A 105 316 224 HOH HOH . 
H 4 HOH B 1 212 2 HOH HOH . 
H 4 HOH B 2 213 4 HOH HOH . 
H 4 HOH B 3 214 6 HOH HOH . 
H 4 HOH B 4 215 7 HOH HOH . 
H 4 HOH B 5 216 9 HOH HOH . 
H 4 HOH B 6 217 10 HOH HOH . 
H 4 HOH B 7 218 12 HOH HOH . 
H 4 HOH B 8 219 13 HOH HOH . 
H 4 HOH B 9 220 14 HOH HOH . 
H 4 HOH B 10 221 15 HOH HOH . 
H 4 HOH B 11 222 16 HOH HOH . 
H 4 HOH B 12 223 17 HOH HOH . 
H 4 HOH B 13 224 18 HOH HOH . 
H 4 HOH B 14 225 19 HOH HOH . 
H 4 HOH B 15 226 20 HOH HOH . 
H 4 HOH B 16 227 21 HOH HOH . 
H 4 HOH B 17 228 26 HOH HOH . 
H 4 HOH B 18 229 27 HOH HOH . 
H 4 HOH B 19 230 28 HOH HOH . 
H 4 HOH B 20 231 29 HOH HOH . 
H 4 HOH B 21 232 32 HOH HOH . 
H 4 HOH B 22 233 33 HOH HOH . 
H 4 HOH B 23 234 34 HOH HOH . 
H 4 HOH B 24 235 36 HOH HOH . 
H 4 HOH B 25 236 37 HOH HOH . 
H 4 HOH B 26 237 38 HOH HOH . 
H 4 HOH B 27 238 41 HOH HOH . 
H 4 HOH B 28 239 43 HOH HOH . 
H 4 HOH B 29 240 44 HOH HOH . 
H 4 HOH B 30 241 46 HOH HOH . 
H 4 HOH B 31 242 48 HOH HOH . 
H 4 HOH B 32 243 50 HOH HOH . 
H 4 HOH B 33 244 52 HOH HOH . 
H 4 HOH B 34 245 56 HOH HOH . 
H 4 HOH B 35 246 61 HOH HOH . 
H 4 HOH B 36 247 62 HOH HOH . 
H 4 HOH B 37 248 63 HOH HOH . 
H 4 HOH B 38 249 64 HOH HOH . 
H 4 HOH B 39 250 68 HOH HOH . 
H 4 HOH B 40 251 70 HOH HOH . 
H 4 HOH B 41 252 72 HOH HOH . 
H 4 HOH B 42 253 75 HOH HOH . 
H 4 HOH B 43 254 76 HOH HOH . 
H 4 HOH B 44 255 78 HOH HOH . 
H 4 HOH B 45 256 80 HOH HOH . 
H 4 HOH B 46 257 81 HOH HOH . 
H 4 HOH B 47 258 84 HOH HOH . 
H 4 HOH B 48 259 85 HOH HOH . 
H 4 HOH B 49 260 86 HOH HOH . 
H 4 HOH B 50 261 88 HOH HOH . 
H 4 HOH B 51 262 89 HOH HOH . 
H 4 HOH B 52 263 92 HOH HOH . 
H 4 HOH B 53 264 93 HOH HOH . 
H 4 HOH B 54 265 96 HOH HOH . 
H 4 HOH B 55 266 97 HOH HOH . 
H 4 HOH B 56 267 100 HOH HOH . 
H 4 HOH B 57 268 101 HOH HOH . 
H 4 HOH B 58 269 102 HOH HOH . 
H 4 HOH B 59 270 103 HOH HOH . 
H 4 HOH B 60 271 104 HOH HOH . 
H 4 HOH B 61 272 105 HOH HOH . 
H 4 HOH B 62 273 108 HOH HOH . 
H 4 HOH B 63 274 109 HOH HOH . 
H 4 HOH B 64 275 110 HOH HOH . 
H 4 HOH B 65 276 111 HOH HOH . 
H 4 HOH B 66 277 114 HOH HOH . 
H 4 HOH B 67 278 115 HOH HOH . 
H 4 HOH B 68 279 116 HOH HOH . 
H 4 HOH B 69 280 117 HOH HOH . 
H 4 HOH B 70 281 119 HOH HOH . 
H 4 HOH B 71 282 122 HOH HOH . 
H 4 HOH B 72 283 123 HOH HOH . 
H 4 HOH B 73 284 124 HOH HOH . 
H 4 HOH B 74 285 127 HOH HOH . 
H 4 HOH B 75 286 128 HOH HOH . 
H 4 HOH B 76 287 129 HOH HOH . 
H 4 HOH B 77 288 130 HOH HOH . 
H 4 HOH B 78 289 131 HOH HOH . 
H 4 HOH B 79 290 132 HOH HOH . 
H 4 HOH B 80 291 133 HOH HOH . 
H 4 HOH B 81 292 135 HOH HOH . 
H 4 HOH B 82 293 147 HOH HOH . 
H 4 HOH B 83 294 153 HOH HOH . 
H 4 HOH B 84 295 154 HOH HOH . 
H 4 HOH B 85 296 155 HOH HOH . 
H 4 HOH B 86 297 156 HOH HOH . 
H 4 HOH B 87 298 157 HOH HOH . 
H 4 HOH B 88 299 160 HOH HOH . 
H 4 HOH B 89 300 161 HOH HOH . 
H 4 HOH B 90 301 162 HOH HOH . 
H 4 HOH B 91 302 168 HOH HOH . 
H 4 HOH B 92 303 169 HOH HOH . 
H 4 HOH B 93 304 170 HOH HOH . 
H 4 HOH B 94 305 171 HOH HOH . 
H 4 HOH B 95 306 189 HOH HOH . 
H 4 HOH B 96 307 190 HOH HOH . 
H 4 HOH B 97 308 191 HOH HOH . 
H 4 HOH B 98 309 192 HOH HOH . 
H 4 HOH B 99 310 193 HOH HOH . 
H 4 HOH B 100 311 194 HOH HOH . 
H 4 HOH B 101 312 195 HOH HOH . 
H 4 HOH B 102 313 196 HOH HOH . 
H 4 HOH B 103 314 197 HOH HOH . 
H 4 HOH B 104 315 198 HOH HOH . 
H 4 HOH B 105 316 199 HOH HOH . 
H 4 HOH B 106 317 200 HOH HOH . 
H 4 HOH B 107 318 201 HOH HOH . 
H 4 HOH B 108 319 202 HOH HOH . 
H 4 HOH B 109 320 203 HOH HOH . 
H 4 HOH B 110 321 211 HOH HOH . 
H 4 HOH B 111 322 212 HOH HOH . 
H 4 HOH B 112 323 213 HOH HOH . 
H 4 HOH B 113 324 214 HOH HOH . 
H 4 HOH B 114 325 215 HOH HOH . 
H 4 HOH B 115 326 216 HOH HOH . 
H 4 HOH B 116 327 217 HOH HOH . 
H 4 HOH B 117 328 218 HOH HOH . 
H 4 HOH B 118 329 222 HOH HOH . 
H 4 HOH B 119 330 223 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -49.487 
_atom_site.Cartn_y               -0.203 
_atom_site.Cartn_z               7.814 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        49.04 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           211 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           252 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#