data_3EEB # _model_server_result.job_id y27x9TNly-N8BkP3keIFvA _model_server_result.datetime_utc '2024-11-06 12:28:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3eeb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":211}' # _entry.id 3EEB # _exptl.entry_id 3EEB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3EEB _cell.length_a 44.491 _cell.length_b 66.099 _cell.length_c 136.051 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EEB _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLU 27 A GLU 27 1_555 D NA NA . A NA 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc2 C O31 IHP . A IHP 210 1_555 D NA NA . A NA 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc3 D NA NA . A NA 211 1_555 G O HOH . A HOH 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? metalc ? metalc4 D NA NA . A NA 211 1_555 G O HOH . A HOH 286 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc5 B O GLU 27 B GLU 27 1_555 F NA NA . B NA 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc6 E O31 IHP . B IHP 210 1_555 F NA NA . B NA 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc7 E O32 IHP . B IHP 210 1_555 F NA NA . B NA 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc8 F NA NA . B NA 211 1_555 H O HOH . B HOH 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc9 F NA NA . B NA 211 1_555 H O HOH . B HOH 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3EEB _atom_sites.fract_transf_matrix[1][1] 0.022476 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015129 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00735 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 IHP A 1 210 1 IHP IHP . D 3 NA A 1 211 1 NA NA . E 2 IHP B 1 210 1 IHP IHP . F 3 NA B 1 211 1 NA NA . G 4 HOH A 1 212 1 HOH HOH . G 4 HOH A 2 213 3 HOH HOH . G 4 HOH A 3 214 5 HOH HOH . G 4 HOH A 4 215 8 HOH HOH . G 4 HOH A 5 216 11 HOH HOH . G 4 HOH A 6 217 22 HOH HOH . G 4 HOH A 7 218 23 HOH HOH . G 4 HOH A 8 219 24 HOH HOH . G 4 HOH A 9 220 25 HOH HOH . G 4 HOH A 10 221 30 HOH HOH . G 4 HOH A 11 222 31 HOH HOH . G 4 HOH A 12 223 35 HOH HOH . G 4 HOH A 13 224 39 HOH HOH . G 4 HOH A 14 225 40 HOH HOH . G 4 HOH A 15 226 42 HOH HOH . G 4 HOH A 16 227 45 HOH HOH . G 4 HOH A 17 228 47 HOH HOH . G 4 HOH A 18 229 49 HOH HOH . G 4 HOH A 19 230 51 HOH HOH . G 4 HOH A 20 231 53 HOH HOH . G 4 HOH A 21 232 54 HOH HOH . G 4 HOH A 22 233 55 HOH HOH . G 4 HOH A 23 234 57 HOH HOH . G 4 HOH A 24 235 58 HOH HOH . G 4 HOH A 25 236 59 HOH HOH . G 4 HOH A 26 237 60 HOH HOH . G 4 HOH A 27 238 65 HOH HOH . G 4 HOH A 28 239 66 HOH HOH . G 4 HOH A 29 240 67 HOH HOH . G 4 HOH A 30 241 69 HOH HOH . G 4 HOH A 31 242 71 HOH HOH . G 4 HOH A 32 243 73 HOH HOH . G 4 HOH A 33 244 74 HOH HOH . G 4 HOH A 34 245 77 HOH HOH . G 4 HOH A 35 246 79 HOH HOH . G 4 HOH A 36 247 82 HOH HOH . G 4 HOH A 37 248 83 HOH HOH . G 4 HOH A 38 249 87 HOH HOH . G 4 HOH A 39 250 90 HOH HOH . G 4 HOH A 40 251 91 HOH HOH . G 4 HOH A 41 252 94 HOH HOH . G 4 HOH A 42 253 95 HOH HOH . G 4 HOH A 43 254 98 HOH HOH . G 4 HOH A 44 255 99 HOH HOH . G 4 HOH A 45 256 106 HOH HOH . G 4 HOH A 46 257 107 HOH HOH . G 4 HOH A 47 258 112 HOH HOH . G 4 HOH A 48 259 113 HOH HOH . G 4 HOH A 49 260 118 HOH HOH . G 4 HOH A 50 261 120 HOH HOH . G 4 HOH A 51 262 121 HOH HOH . G 4 HOH A 52 263 125 HOH HOH . G 4 HOH A 53 264 126 HOH HOH . G 4 HOH A 54 265 134 HOH HOH . G 4 HOH A 55 266 136 HOH HOH . G 4 HOH A 56 267 137 HOH HOH . G 4 HOH A 57 268 138 HOH HOH . G 4 HOH A 58 269 139 HOH HOH . G 4 HOH A 59 270 140 HOH HOH . G 4 HOH A 60 271 141 HOH HOH . G 4 HOH A 61 272 142 HOH HOH . G 4 HOH A 62 273 143 HOH HOH . G 4 HOH A 63 274 144 HOH HOH . G 4 HOH A 64 275 145 HOH HOH . G 4 HOH A 65 276 146 HOH HOH . G 4 HOH A 66 277 148 HOH HOH . G 4 HOH A 67 278 149 HOH HOH . G 4 HOH A 68 279 150 HOH HOH . G 4 HOH A 69 280 151 HOH HOH . G 4 HOH A 70 281 152 HOH HOH . G 4 HOH A 71 282 158 HOH HOH . G 4 HOH A 72 283 159 HOH HOH . G 4 HOH A 73 284 163 HOH HOH . G 4 HOH A 74 285 164 HOH HOH . G 4 HOH A 75 286 165 HOH HOH . G 4 HOH A 76 287 166 HOH HOH . G 4 HOH A 77 288 167 HOH HOH . G 4 HOH A 78 289 172 HOH HOH . G 4 HOH A 79 290 173 HOH HOH . G 4 HOH A 80 291 174 HOH HOH . G 4 HOH A 81 292 175 HOH HOH . G 4 HOH A 82 293 176 HOH HOH . G 4 HOH A 83 294 177 HOH HOH . G 4 HOH A 84 295 178 HOH HOH . G 4 HOH A 85 296 179 HOH HOH . G 4 HOH A 86 297 180 HOH HOH . G 4 HOH A 87 298 181 HOH HOH . G 4 HOH A 88 299 182 HOH HOH . G 4 HOH A 89 300 183 HOH HOH . G 4 HOH A 90 301 184 HOH HOH . G 4 HOH A 91 302 185 HOH HOH . G 4 HOH A 92 303 186 HOH HOH . G 4 HOH A 93 304 187 HOH HOH . G 4 HOH A 94 305 188 HOH HOH . G 4 HOH A 95 306 204 HOH HOH . G 4 HOH A 96 307 205 HOH HOH . G 4 HOH A 97 308 206 HOH HOH . G 4 HOH A 98 309 207 HOH HOH . G 4 HOH A 99 310 208 HOH HOH . G 4 HOH A 100 311 209 HOH HOH . G 4 HOH A 101 312 210 HOH HOH . G 4 HOH A 102 313 219 HOH HOH . G 4 HOH A 103 314 220 HOH HOH . G 4 HOH A 104 315 221 HOH HOH . G 4 HOH A 105 316 224 HOH HOH . H 4 HOH B 1 212 2 HOH HOH . H 4 HOH B 2 213 4 HOH HOH . H 4 HOH B 3 214 6 HOH HOH . H 4 HOH B 4 215 7 HOH HOH . H 4 HOH B 5 216 9 HOH HOH . H 4 HOH B 6 217 10 HOH HOH . H 4 HOH B 7 218 12 HOH HOH . H 4 HOH B 8 219 13 HOH HOH . H 4 HOH B 9 220 14 HOH HOH . H 4 HOH B 10 221 15 HOH HOH . H 4 HOH B 11 222 16 HOH HOH . H 4 HOH B 12 223 17 HOH HOH . H 4 HOH B 13 224 18 HOH HOH . H 4 HOH B 14 225 19 HOH HOH . H 4 HOH B 15 226 20 HOH HOH . H 4 HOH B 16 227 21 HOH HOH . H 4 HOH B 17 228 26 HOH HOH . H 4 HOH B 18 229 27 HOH HOH . H 4 HOH B 19 230 28 HOH HOH . H 4 HOH B 20 231 29 HOH HOH . H 4 HOH B 21 232 32 HOH HOH . H 4 HOH B 22 233 33 HOH HOH . H 4 HOH B 23 234 34 HOH HOH . H 4 HOH B 24 235 36 HOH HOH . H 4 HOH B 25 236 37 HOH HOH . H 4 HOH B 26 237 38 HOH HOH . H 4 HOH B 27 238 41 HOH HOH . H 4 HOH B 28 239 43 HOH HOH . H 4 HOH B 29 240 44 HOH HOH . H 4 HOH B 30 241 46 HOH HOH . H 4 HOH B 31 242 48 HOH HOH . H 4 HOH B 32 243 50 HOH HOH . H 4 HOH B 33 244 52 HOH HOH . H 4 HOH B 34 245 56 HOH HOH . H 4 HOH B 35 246 61 HOH HOH . H 4 HOH B 36 247 62 HOH HOH . H 4 HOH B 37 248 63 HOH HOH . H 4 HOH B 38 249 64 HOH HOH . H 4 HOH B 39 250 68 HOH HOH . H 4 HOH B 40 251 70 HOH HOH . H 4 HOH B 41 252 72 HOH HOH . H 4 HOH B 42 253 75 HOH HOH . H 4 HOH B 43 254 76 HOH HOH . H 4 HOH B 44 255 78 HOH HOH . H 4 HOH B 45 256 80 HOH HOH . H 4 HOH B 46 257 81 HOH HOH . H 4 HOH B 47 258 84 HOH HOH . H 4 HOH B 48 259 85 HOH HOH . H 4 HOH B 49 260 86 HOH HOH . H 4 HOH B 50 261 88 HOH HOH . H 4 HOH B 51 262 89 HOH HOH . H 4 HOH B 52 263 92 HOH HOH . H 4 HOH B 53 264 93 HOH HOH . H 4 HOH B 54 265 96 HOH HOH . H 4 HOH B 55 266 97 HOH HOH . H 4 HOH B 56 267 100 HOH HOH . H 4 HOH B 57 268 101 HOH HOH . H 4 HOH B 58 269 102 HOH HOH . H 4 HOH B 59 270 103 HOH HOH . H 4 HOH B 60 271 104 HOH HOH . H 4 HOH B 61 272 105 HOH HOH . H 4 HOH B 62 273 108 HOH HOH . H 4 HOH B 63 274 109 HOH HOH . H 4 HOH B 64 275 110 HOH HOH . H 4 HOH B 65 276 111 HOH HOH . H 4 HOH B 66 277 114 HOH HOH . H 4 HOH B 67 278 115 HOH HOH . H 4 HOH B 68 279 116 HOH HOH . H 4 HOH B 69 280 117 HOH HOH . H 4 HOH B 70 281 119 HOH HOH . H 4 HOH B 71 282 122 HOH HOH . H 4 HOH B 72 283 123 HOH HOH . H 4 HOH B 73 284 124 HOH HOH . H 4 HOH B 74 285 127 HOH HOH . H 4 HOH B 75 286 128 HOH HOH . H 4 HOH B 76 287 129 HOH HOH . H 4 HOH B 77 288 130 HOH HOH . H 4 HOH B 78 289 131 HOH HOH . H 4 HOH B 79 290 132 HOH HOH . H 4 HOH B 80 291 133 HOH HOH . H 4 HOH B 81 292 135 HOH HOH . H 4 HOH B 82 293 147 HOH HOH . H 4 HOH B 83 294 153 HOH HOH . H 4 HOH B 84 295 154 HOH HOH . H 4 HOH B 85 296 155 HOH HOH . H 4 HOH B 86 297 156 HOH HOH . H 4 HOH B 87 298 157 HOH HOH . H 4 HOH B 88 299 160 HOH HOH . H 4 HOH B 89 300 161 HOH HOH . H 4 HOH B 90 301 162 HOH HOH . H 4 HOH B 91 302 168 HOH HOH . H 4 HOH B 92 303 169 HOH HOH . H 4 HOH B 93 304 170 HOH HOH . H 4 HOH B 94 305 171 HOH HOH . H 4 HOH B 95 306 189 HOH HOH . H 4 HOH B 96 307 190 HOH HOH . H 4 HOH B 97 308 191 HOH HOH . H 4 HOH B 98 309 192 HOH HOH . H 4 HOH B 99 310 193 HOH HOH . H 4 HOH B 100 311 194 HOH HOH . H 4 HOH B 101 312 195 HOH HOH . H 4 HOH B 102 313 196 HOH HOH . H 4 HOH B 103 314 197 HOH HOH . H 4 HOH B 104 315 198 HOH HOH . H 4 HOH B 105 316 199 HOH HOH . H 4 HOH B 106 317 200 HOH HOH . H 4 HOH B 107 318 201 HOH HOH . H 4 HOH B 108 319 202 HOH HOH . H 4 HOH B 109 320 203 HOH HOH . H 4 HOH B 110 321 211 HOH HOH . H 4 HOH B 111 322 212 HOH HOH . H 4 HOH B 112 323 213 HOH HOH . H 4 HOH B 113 324 214 HOH HOH . H 4 HOH B 114 325 215 HOH HOH . H 4 HOH B 115 326 216 HOH HOH . H 4 HOH B 116 327 217 HOH HOH . H 4 HOH B 117 328 218 HOH HOH . H 4 HOH B 118 329 222 HOH HOH . H 4 HOH B 119 330 223 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x -6.119 _atom_site.Cartn_y 23.249 _atom_site.Cartn_z -40.998 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 26.16 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 211 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #