data_3EEF
#
_model_server_result.job_id            tpubwMQclhUO_ByX3HY5jA 
_model_server_result.datetime_utc      '2024-11-05 00:32:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3eef 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":183}' 
#
_entry.id    3EEF 
#
_exptl.entry_id    3EEF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              65.409 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ZINC ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3EEF 
_cell.length_a            83.97 
_cell.length_b            83.97 
_cell.length_c            98.725 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3EEF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        171 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 62' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E 1 1,2 
A,B,C,D,E 2 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 -41.985 72.720153 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C MSE 1 A MSE 1 1_555 A N LYS 2 A LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale2 A C ASP 9 A ASP 9 1_555 A N MSE 10 A MSE 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale3 A C MSE 10 A MSE 10 1_555 A N VAL 11 A VAL 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale4 A C ALA 24 A ALA 24 1_555 A N MSE 25 A MSE 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale5 A C MSE 25 A MSE 25 1_555 A N LYS 26 A LYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale6 A C SER 66 A SER 66 1_555 A N MSE 67 A MSE 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale7 A C MSE 67 A MSE 67 1_555 A N LYS 68 A LYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale8 A C ASP 102 A ASP 102 1_555 A N MSE 103 A MSE 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? 
covale ? covale9 A C MSE 103 A MSE 103 1_555 A N ILE 104 A ILE 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? 
covale ? covale10 B C MSE 1 B MSE 1 1_555 B N LYS 2 B LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale11 B C ASP 9 B ASP 9 1_555 B N MSE 10 B MSE 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale12 B C MSE 10 B MSE 10 1_555 B N VAL 11 B VAL 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale13 B C ALA 24 B ALA 24 1_555 B N MSE 25 B MSE 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale14 B C MSE 25 B MSE 25 1_555 B N LYS 26 B LYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale15 B C SER 66 B SER 66 1_555 B N MSE 67 B MSE 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale16 B C MSE 67 B MSE 67 1_555 B N LYS 68 B LYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale17 B C ASP 102 B ASP 102 1_555 B N MSE 103 B MSE 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale18 B C MSE 103 B MSE 103 1_555 B N ILE 104 B ILE 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.312 ? 
metalc ? metalc1 A OD2 ASP 50 A ASP 50 1_555 C ZN ZN . A ZN 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
metalc ? metalc2 A NE2 HIS 52 A HIS 52 1_555 C ZN ZN . A ZN 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? 
metalc ? metalc3 A OE1 GLU 58 A GLU 58 1_555 C ZN ZN . A ZN 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? 
metalc ? metalc4 A NE2 HIS 65 A HIS 65 1_555 C ZN ZN . A ZN 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? 
metalc ? metalc5 B OD2 ASP 50 B ASP 50 1_555 D ZN ZN . B ZN 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? 
metalc ? metalc6 B NE2 HIS 52 B HIS 52 1_555 D ZN ZN . B ZN 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? 
metalc ? metalc7 B OE1 GLU 58 B GLU 58 1_555 D ZN ZN . B ZN 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
metalc ? metalc8 B NE2 HIS 65 B HIS 65 1_555 D ZN ZN . B ZN 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? 
#
_chem_comp.formula           'Zn 2' 
_chem_comp.formula_weight    65.409 
_chem_comp.id                ZN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ZINC ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3EEF 
_atom_sites.fract_transf_matrix[1][1]    0.01191 
_atom_sites.fract_transf_matrix[1][2]    0.00688 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01375 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01013 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 183 1 ZN ZN . 
D 2 ZN B 1 183 2 ZN ZN . 
E 3 HOH A 1 184 1 HOH HOH . 
E 3 HOH A 2 185 3 HOH HOH . 
E 3 HOH A 3 186 4 HOH HOH . 
E 3 HOH A 4 187 5 HOH HOH . 
E 3 HOH A 5 188 7 HOH HOH . 
E 3 HOH A 6 189 8 HOH HOH . 
E 3 HOH A 7 190 9 HOH HOH . 
E 3 HOH A 8 191 10 HOH HOH . 
E 3 HOH A 9 192 11 HOH HOH . 
E 3 HOH A 10 193 12 HOH HOH . 
E 3 HOH A 11 194 13 HOH HOH . 
E 3 HOH A 12 195 14 HOH HOH . 
E 3 HOH A 13 196 15 HOH HOH . 
E 3 HOH A 14 197 16 HOH HOH . 
E 3 HOH A 15 198 17 HOH HOH . 
E 3 HOH A 16 199 18 HOH HOH . 
E 3 HOH A 17 200 19 HOH HOH . 
E 3 HOH A 18 201 20 HOH HOH . 
E 3 HOH A 19 202 21 HOH HOH . 
E 3 HOH A 20 203 22 HOH HOH . 
E 3 HOH A 21 204 23 HOH HOH . 
E 3 HOH A 22 205 24 HOH HOH . 
E 3 HOH A 23 206 25 HOH HOH . 
E 3 HOH A 24 207 26 HOH HOH . 
E 3 HOH A 25 208 27 HOH HOH . 
E 3 HOH A 26 209 28 HOH HOH . 
E 3 HOH A 27 210 29 HOH HOH . 
E 3 HOH A 28 211 30 HOH HOH . 
E 3 HOH A 29 212 31 HOH HOH . 
E 3 HOH A 30 213 32 HOH HOH . 
E 3 HOH A 31 214 33 HOH HOH . 
E 3 HOH A 32 215 34 HOH HOH . 
E 3 HOH A 33 216 35 HOH HOH . 
E 3 HOH A 34 217 36 HOH HOH . 
E 3 HOH A 35 218 37 HOH HOH . 
E 3 HOH A 36 219 38 HOH HOH . 
E 3 HOH A 37 220 39 HOH HOH . 
E 3 HOH A 38 221 40 HOH HOH . 
E 3 HOH A 39 222 41 HOH HOH . 
E 3 HOH A 40 223 42 HOH HOH . 
E 3 HOH A 41 224 43 HOH HOH . 
E 3 HOH A 42 225 44 HOH HOH . 
E 3 HOH A 43 226 45 HOH HOH . 
E 3 HOH A 44 227 46 HOH HOH . 
E 3 HOH A 45 228 47 HOH HOH . 
E 3 HOH A 46 229 48 HOH HOH . 
E 3 HOH A 47 230 49 HOH HOH . 
E 3 HOH A 48 231 50 HOH HOH . 
E 3 HOH A 49 232 51 HOH HOH . 
E 3 HOH A 50 233 52 HOH HOH . 
E 3 HOH A 51 234 53 HOH HOH . 
E 3 HOH A 52 235 54 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           ZN 
_atom_site.label_atom_id         ZN 
_atom_site.label_comp_id         ZN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -6.685 
_atom_site.Cartn_y               33.202 
_atom_site.Cartn_z               20.899 
_atom_site.occupancy             0.5 
_atom_site.B_iso_or_equiv        44.33 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          ZN 
_atom_site.auth_comp_id          ZN 
_atom_site.auth_seq_id           183 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              45 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           272 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#