data_3EEK # _model_server_result.job_id jf2qaGjGOBwa_I2qfs3XpQ _model_server_result.datetime_utc '2024-11-05 15:38:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3eek # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":228}' # _entry.id 3EEK # _exptl.entry_id 3EEK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3EEK _cell.length_a 42.753 _cell.length_b 42.753 _cell.length_c 230.448 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EEK _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 291 n n PA O2A NDP sing 292 n n PA O5B NDP sing 293 n n PA O3 NDP sing 294 n n O2A HOA2 NDP sing 295 n n O5B C5B NDP sing 296 n n C5B C4B NDP sing 297 n n C5B H51A NDP sing 298 n n C5B H52A NDP sing 299 n n C4B O4B NDP sing 300 n n C4B C3B NDP sing 301 n n C4B H4B NDP sing 302 n n O4B C1B NDP sing 303 n n C3B O3B NDP sing 304 n n C3B C2B NDP sing 305 n n C3B H3B NDP sing 306 n n O3B HO3A NDP sing 307 n n C2B O2B NDP sing 308 n n C2B C1B NDP sing 309 n n C2B H2B NDP sing 310 n n O2B P2B NDP sing 311 n n C1B N9A NDP sing 312 n n C1B H1B NDP sing 313 n n N9A C8A NDP sing 314 n y N9A C4A NDP sing 315 n y C8A N7A NDP doub 316 n y C8A H8A NDP sing 317 n n N7A C5A NDP sing 318 n y C5A C6A NDP sing 319 n y C5A C4A NDP doub 320 n y C6A N6A NDP sing 321 n n C6A N1A NDP doub 322 n y N6A H61A NDP sing 323 n n N6A H62A NDP sing 324 n n N1A C2A NDP sing 325 n y C2A N3A NDP doub 326 n y C2A H2A NDP sing 327 n n N3A C4A NDP sing 328 n y O3 PN NDP sing 329 n n PN O1N NDP doub 330 n n PN O2N NDP sing 331 n n PN O5D NDP sing 332 n n O2N H21N NDP sing 333 n n O5D C5D NDP sing 334 n n C5D C4D NDP sing 335 n n C5D H51N NDP sing 336 n n C5D H52N NDP sing 337 n n C4D O4D NDP sing 338 n n C4D C3D NDP sing 339 n n C4D H4D NDP sing 340 n n O4D C1D NDP sing 341 n n C3D O3D NDP sing 342 n n C3D C2D NDP sing 343 n n C3D H3D NDP sing 344 n n O3D HO3N NDP sing 345 n n C2D O2D NDP sing 346 n n C2D C1D NDP sing 347 n n C2D H2D NDP sing 348 n n O2D HO2N NDP sing 349 n n C1D N1N NDP sing 350 n n C1D H1D NDP sing 351 n n N1N C2N NDP sing 352 n n N1N C6N NDP sing 353 n n C2N C3N NDP doub 354 n n C2N H2N NDP sing 355 n n C3N C7N NDP sing 356 n n C3N C4N NDP sing 357 n n C7N O7N NDP doub 358 n n C7N N7N NDP sing 359 n n N7N H71N NDP sing 360 n n N7N H72N NDP sing 361 n n C4N C5N NDP sing 362 n n C4N H41N NDP sing 363 n n C4N H42N NDP sing 364 n n C5N C6N NDP doub 365 n n C5N H5N NDP sing 366 n n C6N H6N NDP sing 367 n n P2B O1X NDP doub 368 n n P2B O2X NDP sing 369 n n P2B O3X NDP sing 370 n n O2X HOP2 NDP sing 371 n n O3X HOP3 NDP sing 372 n n # _atom_sites.entry_id 3EEK _atom_sites.fract_transf_matrix[1][1] 0.02339 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02339 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004339 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 228 207 NDP NAP . D 3 53S A 1 229 1 53S 53S . E 2 NDP B 1 228 207 NDP NAP . F 3 53S B 1 229 1 53S 53S . G 4 HOH A 1 230 1 HOH HOH . G 4 HOH A 2 231 2 HOH HOH . G 4 HOH A 3 232 4 HOH HOH . G 4 HOH A 4 233 5 HOH HOH . G 4 HOH A 5 234 8 HOH HOH . G 4 HOH A 6 235 11 HOH HOH . G 4 HOH A 7 236 12 HOH HOH . G 4 HOH A 8 237 13 HOH HOH . G 4 HOH A 9 238 14 HOH HOH . G 4 HOH A 10 239 16 HOH HOH . G 4 HOH A 11 240 17 HOH HOH . G 4 HOH A 12 241 18 HOH HOH . G 4 HOH A 13 242 21 HOH HOH . G 4 HOH A 14 243 23 HOH HOH . G 4 HOH A 15 244 24 HOH HOH . G 4 HOH A 16 245 25 HOH HOH . G 4 HOH A 17 246 26 HOH HOH . G 4 HOH A 18 247 35 HOH HOH . G 4 HOH A 19 248 36 HOH HOH . G 4 HOH A 20 249 40 HOH HOH . G 4 HOH A 21 250 42 HOH HOH . G 4 HOH A 22 251 44 HOH HOH . G 4 HOH A 23 252 45 HOH HOH . G 4 HOH A 24 253 46 HOH HOH . G 4 HOH A 25 254 47 HOH HOH . G 4 HOH A 26 255 48 HOH HOH . G 4 HOH A 27 256 51 HOH HOH . G 4 HOH A 28 257 52 HOH HOH . G 4 HOH A 29 258 53 HOH HOH . G 4 HOH A 30 259 54 HOH HOH . G 4 HOH A 31 260 55 HOH HOH . G 4 HOH A 32 261 57 HOH HOH . G 4 HOH A 33 262 60 HOH HOH . G 4 HOH A 34 263 61 HOH HOH . G 4 HOH A 35 264 64 HOH HOH . G 4 HOH A 36 265 66 HOH HOH . G 4 HOH A 37 266 74 HOH HOH . G 4 HOH A 38 267 75 HOH HOH . G 4 HOH A 39 268 76 HOH HOH . G 4 HOH A 40 269 79 HOH HOH . G 4 HOH A 41 270 80 HOH HOH . G 4 HOH A 42 271 81 HOH HOH . G 4 HOH A 43 272 82 HOH HOH . G 4 HOH A 44 273 84 HOH HOH . G 4 HOH A 45 274 85 HOH HOH . G 4 HOH A 46 275 86 HOH HOH . G 4 HOH A 47 276 88 HOH HOH . G 4 HOH A 48 277 89 HOH HOH . G 4 HOH A 49 278 90 HOH HOH . G 4 HOH A 50 279 91 HOH HOH . G 4 HOH A 51 280 93 HOH HOH . G 4 HOH A 52 281 96 HOH HOH . G 4 HOH A 53 282 98 HOH HOH . G 4 HOH A 54 283 101 HOH HOH . G 4 HOH A 55 284 103 HOH HOH . G 4 HOH A 56 285 108 HOH HOH . G 4 HOH A 57 286 112 HOH HOH . G 4 HOH A 58 287 114 HOH HOH . G 4 HOH A 59 288 115 HOH HOH . G 4 HOH A 60 289 117 HOH HOH . G 4 HOH A 61 290 119 HOH HOH . G 4 HOH A 62 291 120 HOH HOH . G 4 HOH A 63 292 121 HOH HOH . G 4 HOH A 64 293 124 HOH HOH . G 4 HOH A 65 294 127 HOH HOH . G 4 HOH A 66 295 130 HOH HOH . G 4 HOH A 67 296 131 HOH HOH . G 4 HOH A 68 297 132 HOH HOH . G 4 HOH A 69 298 133 HOH HOH . G 4 HOH A 70 299 137 HOH HOH . G 4 HOH A 71 300 138 HOH HOH . H 4 HOH B 1 230 3 HOH HOH . H 4 HOH B 2 231 6 HOH HOH . H 4 HOH B 3 232 7 HOH HOH . H 4 HOH B 4 233 9 HOH HOH . H 4 HOH B 5 234 10 HOH HOH . H 4 HOH B 6 235 15 HOH HOH . H 4 HOH B 7 236 19 HOH HOH . H 4 HOH B 8 237 20 HOH HOH . H 4 HOH B 9 238 22 HOH HOH . H 4 HOH B 10 239 27 HOH HOH . H 4 HOH B 11 240 28 HOH HOH . H 4 HOH B 12 241 29 HOH HOH . H 4 HOH B 13 242 30 HOH HOH . H 4 HOH B 14 243 31 HOH HOH . H 4 HOH B 15 244 32 HOH HOH . H 4 HOH B 16 245 33 HOH HOH . H 4 HOH B 17 246 34 HOH HOH . H 4 HOH B 18 247 37 HOH HOH . H 4 HOH B 19 248 38 HOH HOH . H 4 HOH B 20 249 39 HOH HOH . H 4 HOH B 21 250 41 HOH HOH . H 4 HOH B 22 251 43 HOH HOH . H 4 HOH B 23 252 49 HOH HOH . H 4 HOH B 24 253 50 HOH HOH . H 4 HOH B 25 254 56 HOH HOH . H 4 HOH B 26 255 58 HOH HOH . H 4 HOH B 27 256 59 HOH HOH . H 4 HOH B 28 257 62 HOH HOH . H 4 HOH B 29 258 63 HOH HOH . H 4 HOH B 30 259 65 HOH HOH . H 4 HOH B 31 260 67 HOH HOH . H 4 HOH B 32 261 69 HOH HOH . H 4 HOH B 33 262 70 HOH HOH . H 4 HOH B 34 263 71 HOH HOH . H 4 HOH B 35 264 72 HOH HOH . H 4 HOH B 36 265 73 HOH HOH . H 4 HOH B 37 266 77 HOH HOH . H 4 HOH B 38 267 78 HOH HOH . H 4 HOH B 39 268 83 HOH HOH . H 4 HOH B 40 269 87 HOH HOH . H 4 HOH B 41 270 92 HOH HOH . H 4 HOH B 42 271 95 HOH HOH . H 4 HOH B 43 272 97 HOH HOH . H 4 HOH B 44 273 99 HOH HOH . H 4 HOH B 45 274 100 HOH HOH . H 4 HOH B 46 275 102 HOH HOH . H 4 HOH B 47 276 104 HOH HOH . H 4 HOH B 48 277 105 HOH HOH . H 4 HOH B 49 278 106 HOH HOH . H 4 HOH B 50 279 107 HOH HOH . H 4 HOH B 51 280 109 HOH HOH . H 4 HOH B 52 281 110 HOH HOH . H 4 HOH B 53 282 111 HOH HOH . H 4 HOH B 54 283 113 HOH HOH . H 4 HOH B 55 284 118 HOH HOH . H 4 HOH B 56 285 122 HOH HOH . H 4 HOH B 57 286 123 HOH HOH . H 4 HOH B 58 287 125 HOH HOH . H 4 HOH B 59 288 126 HOH HOH . H 4 HOH B 60 289 128 HOH HOH . H 4 HOH B 61 290 129 HOH HOH . H 4 HOH B 62 291 134 HOH HOH . H 4 HOH B 63 292 135 HOH HOH . H 4 HOH B 64 293 136 HOH HOH . H 4 HOH B 65 294 139 HOH HOH . H 4 HOH B 66 295 140 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . C 2 17.054 1.87 3.173 1 13.59 ? PA NDP 228 A 1 HETATM 2 O O1A NDP . . . C 2 17.977 1.054 3.977 1 12.35 ? O1A NDP 228 A 1 HETATM 3 O O2A NDP . . . C 2 16.085 1.126 2.367 1 11.94 ? O2A NDP 228 A 1 HETATM 4 O O5B NDP . . . C 2 16.358 3.025 3.966 1 13.56 ? O5B NDP 228 A 1 HETATM 5 C C5B NDP . . . C 2 17.108 3.838 4.834 1 13.16 ? C5B NDP 228 A 1 HETATM 6 C C4B NDP . . . C 2 16.109 4.509 5.774 1 16.61 ? C4B NDP 228 A 1 HETATM 7 O O4B NDP . . . C 2 15.511 3.625 6.732 1 17.99 ? O4B NDP 228 A 1 HETATM 8 C C3B NDP . . . C 2 16.712 5.646 6.599 1 14.07 ? C3B NDP 228 A 1 HETATM 9 O O3B NDP . . . C 2 16.952 6.831 5.837 1 14.1 ? O3B NDP 228 A 1 HETATM 10 C C2B NDP . . . C 2 15.651 5.761 7.706 1 18.03 ? C2B NDP 228 A 1 HETATM 11 O O2B NDP . . . C 2 14.476 6.365 7.22 1 19.96 ? O2B NDP 228 A 1 HETATM 12 C C1B NDP . . . C 2 15.254 4.31 7.947 1 15.46 ? C1B NDP 228 A 1 HETATM 13 N N9A NDP . . . C 2 16.094 3.645 8.946 1 14.65 ? N9A NDP 228 A 1 HETATM 14 C C8A NDP . . . C 2 17.376 3.197 8.814 1 16.2 ? C8A NDP 228 A 1 HETATM 15 N N7A NDP . . . C 2 17.77 2.66 9.996 1 13.19 ? N7A NDP 228 A 1 HETATM 16 C C5A NDP . . . C 2 16.768 2.771 10.876 1 14.57 ? C5A NDP 228 A 1 HETATM 17 C C6A NDP . . . C 2 16.605 2.34 12.21 1 13.35 ? C6A NDP 228 A 1 HETATM 18 N N6A NDP . . . C 2 17.556 1.715 12.928 1 11.64 ? N6A NDP 228 A 1 HETATM 19 N N1A NDP . . . C 2 15.408 2.617 12.793 1 16.04 ? N1A NDP 228 A 1 HETATM 20 C C2A NDP . . . C 2 14.388 3.3 12.17 1 17.99 ? C2A NDP 228 A 1 HETATM 21 N N3A NDP . . . C 2 14.552 3.684 10.848 1 15.31 ? N3A NDP 228 A 1 HETATM 22 C C4A NDP . . . C 2 15.713 3.395 10.214 1 14.52 ? C4A NDP 228 A 1 HETATM 23 O O3 NDP . . . C 2 17.951 2.789 2.194 1 16.6 ? O3 NDP 228 A 1 HETATM 24 P PN NDP . . . C 2 19.354 2.792 1.434 1 18.17 ? PN NDP 228 A 1 HETATM 25 O O1N NDP . . . C 2 19.3 4.047 0.718 1 21.28 ? O1N NDP 228 A 1 HETATM 26 O O2N NDP . . . C 2 20.534 2.522 2.263 1 20.21 ? O2N NDP 228 A 1 HETATM 27 O O5D NDP . . . C 2 19.186 1.537 0.448 1 15.92 ? O5D NDP 228 A 1 HETATM 28 C C5D NDP . . . C 2 18.381 1.64 -0.71 1 18.01 ? C5D NDP 228 A 1 HETATM 29 C C4D NDP . . . C 2 19.094 0.99 -1.889 1 15.68 ? C4D NDP 228 A 1 HETATM 30 O O4D NDP . . . C 2 19.194 -0.39 -1.598 1 15.93 ? O4D NDP 228 A 1 HETATM 31 C C3D NDP . . . C 2 18.322 1.131 -3.198 1 15.86 ? C3D NDP 228 A 1 HETATM 32 O O3D NDP . . . C 2 19.288 1.285 -4.228 1 19.4 ? O3D NDP 228 A 1 HETATM 33 C C2D NDP . . . C 2 17.724 -0.242 -3.417 1 16.3 ? C2D NDP 228 A 1 HETATM 34 O O2D NDP . . . C 2 17.622 -0.583 -4.793 1 16.86 ? O2D NDP 228 A 1 HETATM 35 C C1D NDP . . . C 2 18.71 -1.172 -2.676 1 14.79 ? C1D NDP 228 A 1 HETATM 36 N N1N NDP . . . C 2 18.072 -2.454 -2.308 1 15.31 ? N1N NDP 228 A 1 HETATM 37 C C2N NDP . . . C 2 18.599 -3.577 -2.863 1 10.21 ? C2N NDP 228 A 1 HETATM 38 C C3N NDP . . . C 2 18.069 -4.834 -2.624 1 17.53 ? C3N NDP 228 A 1 HETATM 39 C C7N NDP . . . C 2 18.785 -6.04 -3.224 1 16.43 ? C7N NDP 228 A 1 HETATM 40 O O7N NDP . . . C 2 18.485 -7.308 -2.756 1 15.43 ? O7N NDP 228 A 1 HETATM 41 N N7N NDP . . . C 2 19.67 -5.941 -4.236 1 15.98 ? N7N NDP 228 A 1 HETATM 42 C C4N NDP . . . C 2 16.918 -4.942 -1.767 1 16.9 ? C4N NDP 228 A 1 HETATM 43 C C5N NDP . . . C 2 16.376 -3.775 -1.183 1 12.25 ? C5N NDP 228 A 1 HETATM 44 C C6N NDP . . . C 2 16.943 -2.523 -1.468 1 12.98 ? C6N NDP 228 A 1 HETATM 45 P P2B NDP . . . C 2 14.143 7.926 7.376 1 20.36 ? P2B NDP 228 A 1 HETATM 46 O O1X NDP . . . C 2 15.195 8.601 6.477 1 20.61 ? O1X NDP 228 A 1 HETATM 47 O O2X NDP . . . C 2 12.726 8.152 6.849 1 23.13 ? O2X NDP 228 A 1 HETATM 48 O O3X NDP . . . C 2 14.183 8.282 8.839 1 20.49 ? O3X NDP 228 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 48 #