data_3EEV # _model_server_result.job_id S2o499GSiGMJapQ1svXCLQ _model_server_result.datetime_utc '2024-10-15 02:14:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3eev # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":210}' # _entry.id 3EEV # _exptl.entry_id 3EEV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3EEV _cell.length_a 99.972 _cell.length_b 99.972 _cell.length_c 127.374 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EEV _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 237 n n C1 H11 MPD sing 238 n n C1 H12 MPD sing 239 n n C1 H13 MPD sing 240 n n C2 O2 MPD sing 241 n n C2 CM MPD sing 242 n n C2 C3 MPD sing 243 n n O2 HO2 MPD sing 244 n n CM HM1 MPD sing 245 n n CM HM2 MPD sing 246 n n CM HM3 MPD sing 247 n n C3 C4 MPD sing 248 n n C3 H31 MPD sing 249 n n C3 H32 MPD sing 250 n n C4 O4 MPD sing 251 n n C4 C5 MPD sing 252 n n C4 H4 MPD sing 253 n n O4 HO4 MPD sing 254 n n C5 H51 MPD sing 255 n n C5 H52 MPD sing 256 n n C5 H53 MPD sing 257 n n # _atom_sites.entry_id 3EEV _atom_sites.fract_transf_matrix[1][1] 0.010003 _atom_sites.fract_transf_matrix[1][2] 0.005775 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01155 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007851 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 MPD A 1 210 2 MPD MPD . E 2 MPD C 1 210 1 MPD MPD . F 2 MPD C 1 211 3 MPD MPD . G 3 HOH A 1 211 209 HOH HOH . G 3 HOH A 2 212 210 HOH HOH . G 3 HOH A 3 213 212 HOH HOH . G 3 HOH A 4 214 213 HOH HOH . G 3 HOH A 5 215 215 HOH HOH . G 3 HOH A 6 216 216 HOH HOH . G 3 HOH A 7 217 217 HOH HOH . G 3 HOH A 8 218 1 HOH HOH . G 3 HOH A 9 219 5 HOH HOH . G 3 HOH A 10 220 7 HOH HOH . G 3 HOH A 11 221 8 HOH HOH . G 3 HOH A 12 222 12 HOH HOH . G 3 HOH A 13 223 14 HOH HOH . G 3 HOH A 14 224 16 HOH HOH . G 3 HOH A 15 225 23 HOH HOH . G 3 HOH A 16 226 26 HOH HOH . G 3 HOH A 17 227 29 HOH HOH . G 3 HOH A 18 228 38 HOH HOH . G 3 HOH A 19 229 43 HOH HOH . G 3 HOH A 20 230 46 HOH HOH . G 3 HOH A 21 231 47 HOH HOH . G 3 HOH A 22 232 52 HOH HOH . G 3 HOH A 23 233 53 HOH HOH . G 3 HOH A 24 234 60 HOH HOH . G 3 HOH A 25 235 62 HOH HOH . G 3 HOH A 26 236 63 HOH HOH . G 3 HOH A 27 237 64 HOH HOH . G 3 HOH A 28 238 65 HOH HOH . G 3 HOH A 29 239 72 HOH HOH . G 3 HOH A 30 240 77 HOH HOH . G 3 HOH A 31 241 78 HOH HOH . G 3 HOH A 32 242 79 HOH HOH . G 3 HOH A 33 243 83 HOH HOH . G 3 HOH A 34 244 85 HOH HOH . G 3 HOH A 35 245 94 HOH HOH . G 3 HOH A 36 246 105 HOH HOH . G 3 HOH A 37 247 106 HOH HOH . G 3 HOH A 38 248 114 HOH HOH . G 3 HOH A 39 249 116 HOH HOH . G 3 HOH A 40 250 118 HOH HOH . G 3 HOH A 41 251 119 HOH HOH . G 3 HOH A 42 252 122 HOH HOH . G 3 HOH A 43 253 126 HOH HOH . G 3 HOH A 44 254 127 HOH HOH . G 3 HOH A 45 255 129 HOH HOH . G 3 HOH A 46 256 135 HOH HOH . G 3 HOH A 47 257 138 HOH HOH . G 3 HOH A 48 258 140 HOH HOH . G 3 HOH A 49 259 147 HOH HOH . G 3 HOH A 50 260 149 HOH HOH . G 3 HOH A 51 261 152 HOH HOH . G 3 HOH A 52 262 156 HOH HOH . G 3 HOH A 53 263 162 HOH HOH . G 3 HOH A 54 264 174 HOH HOH . G 3 HOH A 55 265 177 HOH HOH . G 3 HOH A 56 266 178 HOH HOH . G 3 HOH A 57 267 180 HOH HOH . G 3 HOH A 58 268 181 HOH HOH . G 3 HOH A 59 269 182 HOH HOH . G 3 HOH A 60 270 183 HOH HOH . G 3 HOH A 61 271 190 HOH HOH . G 3 HOH A 62 272 193 HOH HOH . G 3 HOH A 63 273 195 HOH HOH . G 3 HOH A 64 274 200 HOH HOH . G 3 HOH A 65 275 207 HOH HOH . G 3 HOH A 66 276 208 HOH HOH . H 3 HOH B 1 213 2 HOH HOH . H 3 HOH B 2 214 214 HOH HOH . H 3 HOH B 3 215 4 HOH HOH . H 3 HOH B 4 218 218 HOH HOH . H 3 HOH B 5 226 15 HOH HOH . H 3 HOH B 6 228 17 HOH HOH . H 3 HOH B 7 230 19 HOH HOH . H 3 HOH B 8 232 21 HOH HOH . H 3 HOH B 9 239 28 HOH HOH . H 3 HOH B 10 242 31 HOH HOH . H 3 HOH B 11 245 34 HOH HOH . H 3 HOH B 12 246 35 HOH HOH . H 3 HOH B 13 248 37 HOH HOH . H 3 HOH B 14 250 39 HOH HOH . H 3 HOH B 15 251 40 HOH HOH . H 3 HOH B 16 252 41 HOH HOH . H 3 HOH B 17 253 42 HOH HOH . H 3 HOH B 18 261 50 HOH HOH . H 3 HOH B 19 266 55 HOH HOH . H 3 HOH B 20 269 58 HOH HOH . H 3 HOH B 21 270 59 HOH HOH . H 3 HOH B 22 272 61 HOH HOH . H 3 HOH B 23 277 66 HOH HOH . H 3 HOH B 24 281 70 HOH HOH . H 3 HOH B 25 292 81 HOH HOH . H 3 HOH B 26 297 86 HOH HOH . H 3 HOH B 27 298 87 HOH HOH . H 3 HOH B 28 300 89 HOH HOH . H 3 HOH B 29 301 90 HOH HOH . H 3 HOH B 30 303 92 HOH HOH . H 3 HOH B 31 306 95 HOH HOH . H 3 HOH B 32 307 96 HOH HOH . H 3 HOH B 33 308 97 HOH HOH . H 3 HOH B 34 314 103 HOH HOH . H 3 HOH B 35 319 108 HOH HOH . H 3 HOH B 36 320 109 HOH HOH . H 3 HOH B 37 321 110 HOH HOH . H 3 HOH B 38 323 112 HOH HOH . H 3 HOH B 39 334 123 HOH HOH . H 3 HOH B 40 336 125 HOH HOH . H 3 HOH B 41 339 128 HOH HOH . H 3 HOH B 42 342 131 HOH HOH . H 3 HOH B 43 344 133 HOH HOH . H 3 HOH B 44 348 137 HOH HOH . H 3 HOH B 45 356 145 HOH HOH . H 3 HOH B 46 357 146 HOH HOH . H 3 HOH B 47 365 154 HOH HOH . H 3 HOH B 48 366 155 HOH HOH . H 3 HOH B 49 368 157 HOH HOH . H 3 HOH B 50 369 158 HOH HOH . H 3 HOH B 51 371 160 HOH HOH . H 3 HOH B 52 374 163 HOH HOH . H 3 HOH B 53 375 164 HOH HOH . H 3 HOH B 54 376 165 HOH HOH . H 3 HOH B 55 378 167 HOH HOH . H 3 HOH B 56 380 169 HOH HOH . H 3 HOH B 57 390 179 HOH HOH . H 3 HOH B 58 395 184 HOH HOH . H 3 HOH B 59 396 185 HOH HOH . H 3 HOH B 60 397 186 HOH HOH . H 3 HOH B 61 398 187 HOH HOH . H 3 HOH B 62 407 196 HOH HOH . H 3 HOH B 63 408 197 HOH HOH . H 3 HOH B 64 410 199 HOH HOH . H 3 HOH B 65 412 201 HOH HOH . I 3 HOH C 1 214 3 HOH HOH . I 3 HOH C 2 217 6 HOH HOH . I 3 HOH C 3 220 9 HOH HOH . I 3 HOH C 4 221 10 HOH HOH . I 3 HOH C 5 222 11 HOH HOH . I 3 HOH C 6 224 13 HOH HOH . I 3 HOH C 7 229 18 HOH HOH . I 3 HOH C 8 231 20 HOH HOH . I 3 HOH C 9 233 22 HOH HOH . I 3 HOH C 10 235 24 HOH HOH . I 3 HOH C 11 236 25 HOH HOH . I 3 HOH C 12 238 27 HOH HOH . I 3 HOH C 13 241 30 HOH HOH . I 3 HOH C 14 243 32 HOH HOH . I 3 HOH C 15 244 33 HOH HOH . I 3 HOH C 16 247 36 HOH HOH . I 3 HOH C 17 255 44 HOH HOH . I 3 HOH C 18 256 45 HOH HOH . I 3 HOH C 19 259 48 HOH HOH . I 3 HOH C 20 260 49 HOH HOH . I 3 HOH C 21 262 51 HOH HOH . I 3 HOH C 22 265 54 HOH HOH . I 3 HOH C 23 267 56 HOH HOH . I 3 HOH C 24 268 57 HOH HOH . I 3 HOH C 25 278 67 HOH HOH . I 3 HOH C 26 279 68 HOH HOH . I 3 HOH C 27 280 69 HOH HOH . I 3 HOH C 28 282 71 HOH HOH . I 3 HOH C 29 284 73 HOH HOH . I 3 HOH C 30 285 74 HOH HOH . I 3 HOH C 31 286 75 HOH HOH . I 3 HOH C 32 287 76 HOH HOH . I 3 HOH C 33 291 80 HOH HOH . I 3 HOH C 34 293 82 HOH HOH . I 3 HOH C 35 295 84 HOH HOH . I 3 HOH C 36 299 88 HOH HOH . I 3 HOH C 37 302 91 HOH HOH . I 3 HOH C 38 304 93 HOH HOH . I 3 HOH C 39 309 98 HOH HOH . I 3 HOH C 40 310 99 HOH HOH . I 3 HOH C 41 311 100 HOH HOH . I 3 HOH C 42 312 101 HOH HOH . I 3 HOH C 43 313 102 HOH HOH . I 3 HOH C 44 315 104 HOH HOH . I 3 HOH C 45 318 107 HOH HOH . I 3 HOH C 46 322 111 HOH HOH . I 3 HOH C 47 324 113 HOH HOH . I 3 HOH C 48 326 115 HOH HOH . I 3 HOH C 49 328 117 HOH HOH . I 3 HOH C 50 331 120 HOH HOH . I 3 HOH C 51 332 121 HOH HOH . I 3 HOH C 52 335 124 HOH HOH . I 3 HOH C 53 341 130 HOH HOH . I 3 HOH C 54 343 132 HOH HOH . I 3 HOH C 55 345 134 HOH HOH . I 3 HOH C 56 347 136 HOH HOH . I 3 HOH C 57 350 139 HOH HOH . I 3 HOH C 58 352 141 HOH HOH . I 3 HOH C 59 353 142 HOH HOH . I 3 HOH C 60 354 143 HOH HOH . I 3 HOH C 61 355 144 HOH HOH . I 3 HOH C 62 359 148 HOH HOH . I 3 HOH C 63 361 150 HOH HOH . I 3 HOH C 64 362 151 HOH HOH . I 3 HOH C 65 364 153 HOH HOH . I 3 HOH C 66 370 159 HOH HOH . I 3 HOH C 67 372 161 HOH HOH . I 3 HOH C 68 377 166 HOH HOH . I 3 HOH C 69 379 168 HOH HOH . I 3 HOH C 70 381 170 HOH HOH . I 3 HOH C 71 382 171 HOH HOH . I 3 HOH C 72 383 172 HOH HOH . I 3 HOH C 73 384 173 HOH HOH . I 3 HOH C 74 386 175 HOH HOH . I 3 HOH C 75 387 176 HOH HOH . I 3 HOH C 76 399 188 HOH HOH . I 3 HOH C 77 400 189 HOH HOH . I 3 HOH C 78 402 191 HOH HOH . I 3 HOH C 79 403 192 HOH HOH . I 3 HOH C 80 405 194 HOH HOH . I 3 HOH C 81 409 198 HOH HOH . I 3 HOH C 82 413 202 HOH HOH . I 3 HOH C 83 414 203 HOH HOH . I 3 HOH C 84 415 204 HOH HOH . I 3 HOH C 85 416 205 HOH HOH . I 3 HOH C 86 417 206 HOH HOH . I 3 HOH C 87 420 211 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . D 2 -59.333 33.903 -0.459 1 38.84 ? C1 MPD 210 A 1 HETATM 2 C C2 MPD . . . D 2 -60.42 33.444 -1.463 1 44.09 ? C2 MPD 210 A 1 HETATM 3 O O2 MPD . . . D 2 -60.31 31.98 -1.548 1 43.54 ? O2 MPD 210 A 1 HETATM 4 C CM MPD . . . D 2 -60.15 33.992 -2.887 1 41.29 ? CM MPD 210 A 1 HETATM 5 C C3 MPD . . . D 2 -61.86 33.79 -0.986 1 41.73 ? C3 MPD 210 A 1 HETATM 6 C C4 MPD . . . D 2 -62.254 33.088 0.335 1 44.76 ? C4 MPD 210 A 1 HETATM 7 O O4 MPD . . . D 2 -61.117 32.355 0.832 1 46 ? O4 MPD 210 A 1 HETATM 8 C C5 MPD . . . D 2 -62.766 34.034 1.443 1 43.77 ? C5 MPD 210 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 580 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 8 #