data_3EF7 # _model_server_result.job_id SE6eVdQo0tdOinfeZa2O3g _model_server_result.datetime_utc '2024-10-25 20:31:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ef7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":488}' # _entry.id 3EF7 # _exptl.entry_id 3EF7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3EF7 _cell.length_a 86.2 _cell.length_b 98.58 _cell.length_c 143.68 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EF7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PQS tetrameric 4 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,H,I,J,K,V 1 1 B,D,L,M,N,O,P,Q,R,S,T,U 2 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V 3 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -x-1,-y,z -1 0 0 0 -1 0 0 0 1 -86.2 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 I N N ? 4 T N N ? 4 U N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C GLC 1 C 1 GLC A 482 MAL 2 n C GLC 2 C 2 GLC A 482 MAL 2 n D GLC 1 D 1 GLC B 482 MAL 2 n D GLC 2 D 2 GLC B 482 MAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 376 A CYS 376 1_555 A SG CYS 469 A CYS 469 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf2 A SG CYS 408 A CYS 408 1_555 A SG CYS 428 A CYS 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf3 B SG CYS 376 B CYS 376 1_555 B SG CYS 469 B CYS 469 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf4 B SG CYS 408 B CYS 408 1_555 B SG CYS 428 B CYS 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 C O4 GLC . C GLC 1 1_555 C C1 GLC . C GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.388 sing covale ? covale2 D O4 GLC . D GLC 1 1_555 D C1 GLC . D GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.421 sing metalc ? metalc1 A N MET 1 A MET 1 1_555 R ZN ZN . B ZN 489 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc2 A OE2 GLU 4 A GLU 4 1_555 L ZN ZN . B ZN 483 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc3 A O HIS 40 A HIS 40 1_555 E ZN ZN . A ZN 484 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? metalc ? metalc4 A ND1 HIS 40 A HIS 40 1_555 E ZN ZN . A ZN 484 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc5 A OD2 ASP 56 A ASP 56 1_555 M ZN ZN . B ZN 484 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc6 A O VAL 182 A VAL 182 1_555 H CA CA . A CA 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc7 A OD1 ASP 185 A ASP 185 1_555 H CA CA . A CA 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc8 A OD2 ASP 185 A ASP 185 1_555 H CA CA . A CA 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.826 ? metalc ? metalc9 A NE2 HIS 204 A HIS 204 1_555 G ZN ZN . A ZN 486 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc10 A O LYS 296 A LYS 296 1_555 I CA CA . A CA 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc11 A O ASP 297 A ASP 297 1_555 I CA CA . A CA 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc12 A OE1 GLN 366 A GLN 366 1_555 H CA CA . A CA 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc13 A OE2 GLU 378 A GLU 378 1_555 J ZN ZN . A ZN 489 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc14 A ND1 HIS 426 A HIS 426 1_555 F ZN ZN . A ZN 485 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc15 A OE2 GLU 427 A GLU 427 1_555 Q ZN ZN . B ZN 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc16 A OE1 GLU 427 A GLU 427 1_555 Q ZN ZN . B ZN 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.673 ? metalc ? metalc17 A NE2 HIS 479 A HIS 479 1_555 K ZN ZN . A ZN 490 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc18 J ZN ZN . A ZN 489 1_555 B OE2 GLU 378 B GLU 378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc19 B N MET 1 B MET 1 1_555 N ZN ZN . B ZN 485 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc20 B OE2 GLU 39 B GLU 39 1_555 N ZN ZN . B ZN 485 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc21 B NE2 HIS 40 B HIS 40 1_555 R ZN ZN . B ZN 489 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc22 B O VAL 182 B VAL 182 1_555 T CA CA . B CA 492 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.753 ? metalc ? metalc23 B OD1 ASP 185 B ASP 185 1_555 T CA CA . B CA 492 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.673 ? metalc ? metalc24 B OD2 ASP 185 B ASP 185 1_555 T CA CA . B CA 492 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.748 ? metalc ? metalc25 B NE2 HIS 204 B HIS 204 1_555 S ZN ZN . B ZN 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc26 B OG SER 234 B SER 234 1_555 U CA CA . B CA 493 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.743 ? metalc ? metalc27 B O LYS 296 B LYS 296 1_555 U CA CA . B CA 493 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc28 B O ASP 297 B ASP 297 1_555 U CA CA . B CA 493 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc29 B OE1 GLN 366 B GLN 366 1_555 T CA CA . B CA 492 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.918 ? metalc ? metalc30 B NE2 HIS 426 B HIS 426 1_555 Q ZN ZN . B ZN 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc31 B OE1 GLU 427 B GLU 427 1_555 P ZN ZN . B ZN 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc32 B OE2 GLU 427 B GLU 427 1_555 P ZN ZN . B ZN 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? metalc ? metalc33 B NE2 HIS 476 B HIS 476 1_555 M ZN ZN . B ZN 484 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc34 B ND1 HIS 476 B HIS 476 1_555 O ZN ZN . B ZN 486 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc35 B NE2 HIS 477 B HIS 477 1_555 N ZN ZN . B ZN 485 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc36 B NE2 HIS 478 B HIS 478 1_555 M ZN ZN . B ZN 484 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc37 B ND1 HIS 478 B HIS 478 1_555 R ZN ZN . B ZN 489 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc38 B NE2 HIS 479 B HIS 479 1_555 N ZN ZN . B ZN 485 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc39 B ND1 HIS 480 B HIS 480 1_555 L ZN ZN . B ZN 483 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc40 B NE2 HIS 480 B HIS 480 1_555 R ZN ZN . B ZN 489 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3EF7 _atom_sites.fract_transf_matrix[1][1] 0.011601 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010144 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00696 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ZN A 1 484 484 ZN ZN . F 3 ZN A 1 485 485 ZN ZN . G 3 ZN A 1 486 486 ZN ZN . H 4 CA A 1 487 487 CA CA . I 4 CA A 1 488 488 CA CA . J 3 ZN A 1 489 486 ZN ZN . K 3 ZN A 1 490 490 ZN ZN . L 3 ZN B 1 483 483 ZN ZN . M 3 ZN B 1 484 483 ZN ZN . N 3 ZN B 1 485 484 ZN ZN . O 3 ZN B 1 486 485 ZN ZN . P 3 ZN B 1 487 487 ZN ZN . Q 3 ZN B 1 488 488 ZN ZN . R 3 ZN B 1 489 489 ZN ZN . S 3 ZN B 1 491 491 ZN ZN . T 4 CA B 1 492 492 CA CA . U 4 CA B 1 493 493 CA CA . V 5 HOH A 1 491 489 HOH HOH . V 5 HOH A 2 492 490 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 4 _atom_site.Cartn_x -3.635 _atom_site.Cartn_y -6.548 _atom_site.Cartn_z 58.075 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 123.42 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 488 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #