data_3EFI # _model_server_result.job_id -fJSF027x9K1J994YzcEbA _model_server_result.datetime_utc '2024-11-22 04:41:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3efi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":300}' # _entry.id 3EFI # _exptl.entry_id 3EFI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 204.225 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description TRYPTOPHAN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.4 _cell.angle_gamma 90 _cell.entry_id 3EFI _cell.length_a 42.07 _cell.length_b 41.32 _cell.length_c 72.05 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EFI _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 94 A HIS 94 1_555 B ZN ZN . A ZN 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc2 A NE2 HIS 96 A HIS 96 1_555 B ZN ZN . A ZN 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc3 A ND1 HIS 119 A HIS 119 1_555 B ZN ZN . A ZN 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc4 B ZN ZN . A ZN 262 1_555 E O HOH . A HOH 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? # _chem_comp.formula 'C11 H12 N2 O2' _chem_comp.formula_weight 204.225 _chem_comp.id TRP _chem_comp.mon_nstd_flag y _chem_comp.name TRYPTOPHAN _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA TRP sing 321 n n N H TRP sing 322 n n N H2 TRP sing 323 n n CA C TRP sing 324 n n CA CB TRP sing 325 n n CA HA TRP sing 326 n n C O TRP doub 327 n n C OXT TRP sing 328 n n CB CG TRP sing 329 n n CB HB2 TRP sing 330 n n CB HB3 TRP sing 331 n n CG CD1 TRP doub 332 n y CG CD2 TRP sing 333 n y CD1 NE1 TRP sing 334 n y CD1 HD1 TRP sing 335 n n CD2 CE2 TRP doub 336 n y CD2 CE3 TRP sing 337 n y NE1 CE2 TRP sing 338 n y NE1 HE1 TRP sing 339 n n CE2 CZ2 TRP sing 340 n y CE3 CZ3 TRP doub 341 n y CE3 HE3 TRP sing 342 n n CZ2 CH2 TRP doub 343 n y CZ2 HZ2 TRP sing 344 n n CZ3 CH2 TRP sing 345 n y CZ3 HZ3 TRP sing 346 n n CH2 HH2 TRP sing 347 n n OXT HXT TRP sing 348 n n # _atom_sites.entry_id 3EFI _atom_sites.fract_transf_matrix[1][1] 0.02377 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006103 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024201 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014329 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 262 262 ZN ZN . C 3 MBO A 1 306 306 MBO CYP . D 4 TRP A 1 300 300 TRP TRP . E 5 HOH A 1 307 2 HOH HOH . E 5 HOH A 2 308 3 HOH HOH . E 5 HOH A 3 309 4 HOH HOH . E 5 HOH A 4 310 5 HOH HOH . E 5 HOH A 5 311 6 HOH HOH . E 5 HOH A 6 312 7 HOH HOH . E 5 HOH A 7 313 8 HOH HOH . E 5 HOH A 8 314 9 HOH HOH . E 5 HOH A 9 315 10 HOH HOH . E 5 HOH A 10 316 11 HOH HOH . E 5 HOH A 11 317 12 HOH HOH . E 5 HOH A 12 318 13 HOH HOH . E 5 HOH A 13 319 14 HOH HOH . E 5 HOH A 14 320 15 HOH HOH . E 5 HOH A 15 321 16 HOH HOH . E 5 HOH A 16 322 17 HOH HOH . E 5 HOH A 17 323 18 HOH HOH . E 5 HOH A 18 324 19 HOH HOH . E 5 HOH A 19 325 20 HOH HOH . E 5 HOH A 20 326 21 HOH HOH . E 5 HOH A 21 327 22 HOH HOH . E 5 HOH A 22 328 23 HOH HOH . E 5 HOH A 23 329 24 HOH HOH . E 5 HOH A 24 330 25 HOH HOH . E 5 HOH A 25 331 26 HOH HOH . E 5 HOH A 26 332 27 HOH HOH . E 5 HOH A 27 333 28 HOH HOH . E 5 HOH A 28 334 29 HOH HOH . E 5 HOH A 29 335 30 HOH HOH . E 5 HOH A 30 336 31 HOH HOH . E 5 HOH A 31 337 32 HOH HOH . E 5 HOH A 32 338 33 HOH HOH . E 5 HOH A 33 339 34 HOH HOH . E 5 HOH A 34 340 35 HOH HOH . E 5 HOH A 35 341 36 HOH HOH . E 5 HOH A 36 342 37 HOH HOH . E 5 HOH A 37 343 38 HOH HOH . E 5 HOH A 38 344 39 HOH HOH . E 5 HOH A 39 345 40 HOH HOH . E 5 HOH A 40 346 41 HOH HOH . E 5 HOH A 41 347 42 HOH HOH . E 5 HOH A 42 348 43 HOH HOH . E 5 HOH A 43 349 44 HOH HOH . E 5 HOH A 44 350 45 HOH HOH . E 5 HOH A 45 351 46 HOH HOH . E 5 HOH A 46 352 47 HOH HOH . E 5 HOH A 47 353 48 HOH HOH . E 5 HOH A 48 354 49 HOH HOH . E 5 HOH A 49 355 50 HOH HOH . E 5 HOH A 50 356 51 HOH HOH . E 5 HOH A 51 357 52 HOH HOH . E 5 HOH A 52 358 53 HOH HOH . E 5 HOH A 53 359 54 HOH HOH . E 5 HOH A 54 360 55 HOH HOH . E 5 HOH A 55 361 56 HOH HOH . E 5 HOH A 56 362 57 HOH HOH . E 5 HOH A 57 363 58 HOH HOH . E 5 HOH A 58 364 59 HOH HOH . E 5 HOH A 59 365 60 HOH HOH . E 5 HOH A 60 366 61 HOH HOH . E 5 HOH A 61 367 62 HOH HOH . E 5 HOH A 62 368 63 HOH HOH . E 5 HOH A 63 369 64 HOH HOH . E 5 HOH A 64 370 65 HOH HOH . E 5 HOH A 65 371 66 HOH HOH . E 5 HOH A 66 372 67 HOH HOH . E 5 HOH A 67 373 68 HOH HOH . E 5 HOH A 68 374 69 HOH HOH . E 5 HOH A 69 375 70 HOH HOH . E 5 HOH A 70 376 71 HOH HOH . E 5 HOH A 71 377 72 HOH HOH . E 5 HOH A 72 378 73 HOH HOH . E 5 HOH A 73 379 74 HOH HOH . E 5 HOH A 74 380 75 HOH HOH . E 5 HOH A 75 381 76 HOH HOH . E 5 HOH A 76 382 77 HOH HOH . E 5 HOH A 77 383 78 HOH HOH . E 5 HOH A 78 384 79 HOH HOH . E 5 HOH A 79 385 80 HOH HOH . E 5 HOH A 80 386 81 HOH HOH . E 5 HOH A 81 387 82 HOH HOH . E 5 HOH A 82 388 83 HOH HOH . E 5 HOH A 83 389 84 HOH HOH . E 5 HOH A 84 390 85 HOH HOH . E 5 HOH A 85 391 86 HOH HOH . E 5 HOH A 86 392 87 HOH HOH . E 5 HOH A 87 393 88 HOH HOH . E 5 HOH A 88 394 89 HOH HOH . E 5 HOH A 89 395 90 HOH HOH . E 5 HOH A 90 396 91 HOH HOH . E 5 HOH A 91 397 92 HOH HOH . E 5 HOH A 92 398 93 HOH HOH . E 5 HOH A 93 399 94 HOH HOH . E 5 HOH A 94 400 95 HOH HOH . E 5 HOH A 95 401 96 HOH HOH . E 5 HOH A 96 402 97 HOH HOH . E 5 HOH A 97 403 98 HOH HOH . E 5 HOH A 98 404 99 HOH HOH . E 5 HOH A 99 405 100 HOH HOH . E 5 HOH A 100 406 101 HOH HOH . E 5 HOH A 101 407 102 HOH HOH . E 5 HOH A 102 408 103 HOH HOH . E 5 HOH A 103 409 104 HOH HOH . E 5 HOH A 104 410 105 HOH HOH . E 5 HOH A 105 411 106 HOH HOH . E 5 HOH A 106 412 107 HOH HOH . E 5 HOH A 107 413 108 HOH HOH . E 5 HOH A 108 414 109 HOH HOH . E 5 HOH A 109 415 110 HOH HOH . E 5 HOH A 110 416 112 HOH HOH . E 5 HOH A 111 417 113 HOH HOH . E 5 HOH A 112 418 114 HOH HOH . E 5 HOH A 113 419 115 HOH HOH . E 5 HOH A 114 420 116 HOH HOH . E 5 HOH A 115 421 117 HOH HOH . E 5 HOH A 116 422 118 HOH HOH . E 5 HOH A 117 423 119 HOH HOH . E 5 HOH A 118 424 120 HOH HOH . E 5 HOH A 119 425 121 HOH HOH . E 5 HOH A 120 426 122 HOH HOH . E 5 HOH A 121 427 123 HOH HOH . E 5 HOH A 122 428 124 HOH HOH . E 5 HOH A 123 429 127 HOH HOH . E 5 HOH A 124 430 128 HOH HOH . E 5 HOH A 125 431 130 HOH HOH . E 5 HOH A 126 432 131 HOH HOH . E 5 HOH A 127 433 132 HOH HOH . E 5 HOH A 128 434 133 HOH HOH . E 5 HOH A 129 435 134 HOH HOH . E 5 HOH A 130 436 135 HOH HOH . E 5 HOH A 131 437 136 HOH HOH . E 5 HOH A 132 438 137 HOH HOH . E 5 HOH A 133 439 138 HOH HOH . E 5 HOH A 134 440 139 HOH HOH . E 5 HOH A 135 441 140 HOH HOH . E 5 HOH A 136 442 141 HOH HOH . E 5 HOH A 137 443 142 HOH HOH . E 5 HOH A 138 444 143 HOH HOH . E 5 HOH A 139 445 144 HOH HOH . E 5 HOH A 140 446 145 HOH HOH . E 5 HOH A 141 447 146 HOH HOH . E 5 HOH A 142 448 147 HOH HOH . E 5 HOH A 143 449 148 HOH HOH . E 5 HOH A 144 450 149 HOH HOH . E 5 HOH A 145 451 150 HOH HOH . E 5 HOH A 146 452 151 HOH HOH . E 5 HOH A 147 453 152 HOH HOH . E 5 HOH A 148 454 154 HOH HOH . E 5 HOH A 149 455 155 HOH HOH . E 5 HOH A 150 456 156 HOH HOH . E 5 HOH A 151 457 157 HOH HOH . E 5 HOH A 152 458 158 HOH HOH . E 5 HOH A 153 459 159 HOH HOH . E 5 HOH A 154 460 160 HOH HOH . E 5 HOH A 155 461 162 HOH HOH . E 5 HOH A 156 462 164 HOH HOH . E 5 HOH A 157 463 165 HOH HOH . E 5 HOH A 158 464 166 HOH HOH . E 5 HOH A 159 465 168 HOH HOH . E 5 HOH A 160 466 169 HOH HOH . E 5 HOH A 161 467 171 HOH HOH . E 5 HOH A 162 468 172 HOH HOH . E 5 HOH A 163 469 173 HOH HOH . E 5 HOH A 164 470 174 HOH HOH . E 5 HOH A 165 471 175 HOH HOH . E 5 HOH A 166 472 176 HOH HOH . E 5 HOH A 167 473 177 HOH HOH . E 5 HOH A 168 474 180 HOH HOH . E 5 HOH A 169 475 181 HOH HOH . E 5 HOH A 170 476 182 HOH HOH . E 5 HOH A 171 477 186 HOH HOH . E 5 HOH A 172 478 190 HOH HOH . E 5 HOH A 173 479 191 HOH HOH . E 5 HOH A 174 480 192 HOH HOH . E 5 HOH A 175 481 193 HOH HOH . E 5 HOH A 176 482 194 HOH HOH . E 5 HOH A 177 483 195 HOH HOH . E 5 HOH A 178 484 196 HOH HOH . E 5 HOH A 179 485 197 HOH HOH . E 5 HOH A 180 486 198 HOH HOH . E 5 HOH A 181 487 199 HOH HOH . E 5 HOH A 182 488 200 HOH HOH . E 5 HOH A 183 489 203 HOH HOH . E 5 HOH A 184 490 204 HOH HOH . E 5 HOH A 185 491 205 HOH HOH . E 5 HOH A 186 492 207 HOH HOH . E 5 HOH A 187 493 208 HOH HOH . E 5 HOH A 188 494 209 HOH HOH . E 5 HOH A 189 495 210 HOH HOH . E 5 HOH A 190 496 211 HOH HOH . E 5 HOH A 191 497 212 HOH HOH . E 5 HOH A 192 498 213 HOH HOH . E 5 HOH A 193 499 214 HOH HOH . E 5 HOH A 194 500 215 HOH HOH . E 5 HOH A 195 501 216 HOH HOH . E 5 HOH A 196 502 219 HOH HOH . E 5 HOH A 197 503 220 HOH HOH . E 5 HOH A 198 504 221 HOH HOH . E 5 HOH A 199 505 224 HOH HOH . E 5 HOH A 200 506 225 HOH HOH . E 5 HOH A 201 507 227 HOH HOH . E 5 HOH A 202 508 228 HOH HOH . E 5 HOH A 203 509 233 HOH HOH . E 5 HOH A 204 510 234 HOH HOH . E 5 HOH A 205 511 235 HOH HOH . E 5 HOH A 206 512 243 HOH HOH . E 5 HOH A 207 513 245 HOH HOH . E 5 HOH A 208 514 248 HOH HOH . E 5 HOH A 209 515 249 HOH HOH . E 5 HOH A 210 516 251 HOH HOH . E 5 HOH A 211 517 254 HOH HOH . E 5 HOH A 212 518 255 HOH HOH . E 5 HOH A 213 519 256 HOH HOH . E 5 HOH A 214 520 257 HOH HOH . E 5 HOH A 215 521 258 HOH HOH . E 5 HOH A 216 522 262 HOH HOH . E 5 HOH A 217 523 268 HOH HOH . E 5 HOH A 218 524 283 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N TRP . . . D 4 -3.773 12.494 8.026 1 22.16 ? N TRP 300 A 1 HETATM 2 C CA TRP . . . D 4 -4.151 11.333 8.876 1 21.72 ? CA TRP 300 A 1 HETATM 3 C C TRP . . . D 4 -5.165 10.458 8.143 1 21.57 ? C TRP 300 A 1 HETATM 4 O O TRP . . . D 4 -4.658 9.557 7.473 1 21.58 ? O TRP 300 A 1 HETATM 5 C CB TRP . . . D 4 -4.596 11.732 10.292 1 21.35 ? CB TRP 300 A 1 HETATM 6 C CG TRP . . . D 4 -3.86 12.962 10.819 1 20.8 ? CG TRP 300 A 1 HETATM 7 C CD1 TRP . . . D 4 -2.501 13.139 10.932 1 21.41 ? CD1 TRP 300 A 1 HETATM 8 C CD2 TRP . . . D 4 -4.456 14.18 11.236 1 20.52 ? CD2 TRP 300 A 1 HETATM 9 N NE1 TRP . . . D 4 -2.229 14.393 11.424 1 20.16 ? NE1 TRP 300 A 1 HETATM 10 C CE2 TRP . . . D 4 -3.415 15.046 11.628 1 19.99 ? CE2 TRP 300 A 1 HETATM 11 C CE3 TRP . . . D 4 -5.783 14.625 11.343 1 20.58 ? CE3 TRP 300 A 1 HETATM 12 C CZ2 TRP . . . D 4 -3.655 16.342 12.085 1 19.37 ? CZ2 TRP 300 A 1 HETATM 13 C CZ3 TRP . . . D 4 -6.016 15.918 11.813 1 20.36 ? CZ3 TRP 300 A 1 HETATM 14 C CH2 TRP . . . D 4 -4.954 16.759 12.159 1 19.9 ? CH2 TRP 300 A 1 HETATM 15 O OXT TRP . . . D 4 -6.412 10.58 8.173 1 21.07 ? OXT TRP 300 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 248 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 15 #