data_3EFK # _model_server_result.job_id ayh73NOKDb0Xzyzi9Zirpw _model_server_result.datetime_utc '2024-11-22 19:37:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3efk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2}' # _entry.id 3EFK # _exptl.entry_id 3EFK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 516.495 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-{4-[(6,7-dimethoxyquinolin-4-yl)oxy]-3-fluorophenyl}-2-[(4-fluorophenyl)amino]-3-methylpyrimidin-4(3H)-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3EFK _cell.length_a 76.205 _cell.length_b 78.25 _cell.length_c 129.684 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EFK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 software_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,C,E 2 1 B,D,F 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C28 H22 F2 N4 O4' _chem_comp.formula_weight 516.495 _chem_comp.id MT4 _chem_comp.mon_nstd_flag . _chem_comp.name 5-{4-[(6,7-dimethoxyquinolin-4-yl)oxy]-3-fluorophenyl}-2-[(4-fluorophenyl)amino]-3-methylpyrimidin-4(3H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 MT4 doub 237 n y N1 C3 MT4 sing 238 n y N3 C20 MT4 doub 239 n n N3 C21 MT4 sing 240 n n C4 C5 MT4 sing 241 n y C4 C3 MT4 doub 242 n y C5 C1 MT4 doub 243 n y C5 O3 MT4 sing 244 n n C6 C7 MT4 sing 245 n y C6 O1 MT4 sing 246 n n C6 C9 MT4 doub 247 n y C7 C8 MT4 doub 248 n y C7 O2 MT4 sing 249 n n C8 C2 MT4 sing 250 n y C10 O2 MT4 sing 251 n n C13 C12 MT4 doub 252 n y C13 C14 MT4 sing 253 n y C13 F2 MT4 sing 254 n n C15 C14 MT4 doub 255 n y C15 C16 MT4 sing 256 n y C15 C18 MT4 sing 257 n n C17 C12 MT4 sing 258 n y C17 C16 MT4 doub 259 n y C20 N2 MT4 sing 260 n n C20 N4 MT4 sing 261 n n C21 C18 MT4 doub 262 n n C22 N2 MT4 sing 263 n n C24 C23 MT4 doub 264 n y C24 C25 MT4 sing 265 n y C26 C25 MT4 doub 266 n y C26 F1 MT4 sing 267 n n C26 C27 MT4 sing 268 n y C28 C23 MT4 sing 269 n y C28 C27 MT4 doub 270 n y O1 C11 MT4 sing 271 n n C9 C1 MT4 sing 272 n y C1 C2 MT4 sing 273 n y O3 C12 MT4 sing 274 n n C18 C19 MT4 sing 275 n n C19 O4 MT4 doub 276 n n C19 N2 MT4 sing 277 n n N4 C23 MT4 sing 278 n n C4 H4 MT4 sing 279 n n C8 H8 MT4 sing 280 n n C10 H10 MT4 sing 281 n n C10 H10A MT4 sing 282 n n C10 H10B MT4 sing 283 n n C17 H17 MT4 sing 284 n n C21 H21 MT4 sing 285 n n C22 H22 MT4 sing 286 n n C22 H22A MT4 sing 287 n n C22 H22B MT4 sing 288 n n C24 H24 MT4 sing 289 n n C28 H28 MT4 sing 290 n n C11 H11 MT4 sing 291 n n C11 H11A MT4 sing 292 n n C11 H11B MT4 sing 293 n n C9 H9 MT4 sing 294 n n C3 H3 MT4 sing 295 n n C14 H14 MT4 sing 296 n n C16 H16 MT4 sing 297 n n N4 HN4 MT4 sing 298 n n C25 H25 MT4 sing 299 n n C27 H27 MT4 sing 300 n n # _atom_sites.entry_id 3EFK _atom_sites.fract_transf_matrix[1][1] 0.013122 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01278 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007711 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MT4 A 1 1 1 MT4 MT4 . D 2 MT4 B 1 2 2 MT4 MT4 . E 3 HOH A 1 1357 1 HOH HOH . E 3 HOH A 2 1358 3 HOH HOH . E 3 HOH A 3 1359 6 HOH HOH . E 3 HOH A 4 1360 7 HOH HOH . E 3 HOH A 5 1361 8 HOH HOH . E 3 HOH A 6 1363 11 HOH HOH . E 3 HOH A 7 1364 12 HOH HOH . E 3 HOH A 8 1365 13 HOH HOH . E 3 HOH A 9 1366 19 HOH HOH . E 3 HOH A 10 1367 20 HOH HOH . E 3 HOH A 11 1368 21 HOH HOH . E 3 HOH A 12 1369 22 HOH HOH . E 3 HOH A 13 1370 23 HOH HOH . E 3 HOH A 14 1371 24 HOH HOH . E 3 HOH A 15 1372 26 HOH HOH . E 3 HOH A 16 1373 27 HOH HOH . E 3 HOH A 17 1374 29 HOH HOH . E 3 HOH A 18 1375 34 HOH HOH . E 3 HOH A 19 1376 35 HOH HOH . E 3 HOH A 20 1377 36 HOH HOH . E 3 HOH A 21 1378 37 HOH HOH . E 3 HOH A 22 1379 38 HOH HOH . E 3 HOH A 23 1380 39 HOH HOH . E 3 HOH A 24 1381 42 HOH HOH . E 3 HOH A 25 1382 44 HOH HOH . E 3 HOH A 26 1383 45 HOH HOH . E 3 HOH A 27 1384 51 HOH HOH . E 3 HOH A 28 1385 54 HOH HOH . E 3 HOH A 29 1386 55 HOH HOH . E 3 HOH A 30 1387 56 HOH HOH . E 3 HOH A 31 1388 58 HOH HOH . E 3 HOH A 32 1389 59 HOH HOH . E 3 HOH A 33 1390 60 HOH HOH . E 3 HOH A 34 1391 61 HOH HOH . E 3 HOH A 35 1392 62 HOH HOH . E 3 HOH A 36 1393 63 HOH HOH . E 3 HOH A 37 1394 66 HOH HOH . E 3 HOH A 38 1395 67 HOH HOH . E 3 HOH A 39 1396 71 HOH HOH . E 3 HOH A 40 1398 75 HOH HOH . E 3 HOH A 41 1399 76 HOH HOH . E 3 HOH A 42 1400 78 HOH HOH . E 3 HOH A 43 1401 80 HOH HOH . E 3 HOH A 44 1402 85 HOH HOH . E 3 HOH A 45 1403 88 HOH HOH . E 3 HOH A 46 1404 89 HOH HOH . E 3 HOH A 47 1405 91 HOH HOH . E 3 HOH A 48 1407 95 HOH HOH . E 3 HOH A 49 1408 96 HOH HOH . E 3 HOH A 50 1409 97 HOH HOH . E 3 HOH A 51 1410 98 HOH HOH . E 3 HOH A 52 1411 99 HOH HOH . E 3 HOH A 53 1412 100 HOH HOH . E 3 HOH A 54 1413 101 HOH HOH . E 3 HOH A 55 1414 102 HOH HOH . E 3 HOH A 56 1416 108 HOH HOH . E 3 HOH A 57 1417 109 HOH HOH . E 3 HOH A 58 1418 110 HOH HOH . E 3 HOH A 59 1419 111 HOH HOH . E 3 HOH A 60 1420 112 HOH HOH . E 3 HOH A 61 1421 113 HOH HOH . E 3 HOH A 62 1422 114 HOH HOH . F 3 HOH B 1 1362 9 HOH HOH . F 3 HOH B 2 1363 74 HOH HOH . F 3 HOH B 3 1364 92 HOH HOH . F 3 HOH B 4 1365 104 HOH HOH . F 3 HOH B 5 1366 2 HOH HOH . F 3 HOH B 6 1367 4 HOH HOH . F 3 HOH B 7 1368 5 HOH HOH . F 3 HOH B 8 1369 10 HOH HOH . F 3 HOH B 9 1370 14 HOH HOH . F 3 HOH B 10 1371 15 HOH HOH . F 3 HOH B 11 1372 16 HOH HOH . F 3 HOH B 12 1373 18 HOH HOH . F 3 HOH B 13 1374 25 HOH HOH . F 3 HOH B 14 1375 28 HOH HOH . F 3 HOH B 15 1376 30 HOH HOH . F 3 HOH B 16 1377 31 HOH HOH . F 3 HOH B 17 1378 33 HOH HOH . F 3 HOH B 18 1379 40 HOH HOH . F 3 HOH B 19 1380 41 HOH HOH . F 3 HOH B 20 1381 43 HOH HOH . F 3 HOH B 21 1382 46 HOH HOH . F 3 HOH B 22 1383 47 HOH HOH . F 3 HOH B 23 1384 48 HOH HOH . F 3 HOH B 24 1385 49 HOH HOH . F 3 HOH B 25 1386 50 HOH HOH . F 3 HOH B 26 1387 52 HOH HOH . F 3 HOH B 27 1388 53 HOH HOH . F 3 HOH B 28 1389 57 HOH HOH . F 3 HOH B 29 1390 64 HOH HOH . F 3 HOH B 30 1391 65 HOH HOH . F 3 HOH B 31 1392 68 HOH HOH . F 3 HOH B 32 1393 69 HOH HOH . F 3 HOH B 33 1394 70 HOH HOH . F 3 HOH B 34 1395 72 HOH HOH . F 3 HOH B 35 1396 73 HOH HOH . F 3 HOH B 36 1397 77 HOH HOH . F 3 HOH B 37 1398 79 HOH HOH . F 3 HOH B 38 1399 81 HOH HOH . F 3 HOH B 39 1400 82 HOH HOH . F 3 HOH B 40 1401 84 HOH HOH . F 3 HOH B 41 1402 86 HOH HOH . F 3 HOH B 42 1403 87 HOH HOH . F 3 HOH B 43 1404 90 HOH HOH . F 3 HOH B 44 1405 93 HOH HOH . F 3 HOH B 45 1406 94 HOH HOH . F 3 HOH B 46 1407 103 HOH HOH . F 3 HOH B 47 1408 105 HOH HOH . F 3 HOH B 48 1409 106 HOH HOH . F 3 HOH B 49 1410 107 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 MT4 . . . D 2 62.387 27.002 74.994 1 26.97 ? N1 MT4 2 B 1 HETATM 2 N N3 MT4 . . . D 2 63.807 24.461 85.039 1 29.74 ? N3 MT4 2 B 1 HETATM 3 C C4 MT4 . . . D 2 62.402 26.451 77.296 1 26.85 ? C4 MT4 2 B 1 HETATM 4 C C5 MT4 . . . D 2 61.039 26.732 77.394 1 27.25 ? C5 MT4 2 B 1 HETATM 5 C C6 MT4 . . . D 2 58.344 27.866 75.13 1 26.98 ? C6 MT4 2 B 1 HETATM 6 C C7 MT4 . . . D 2 59.042 27.995 73.936 1 26.66 ? C7 MT4 2 B 1 HETATM 7 C C8 MT4 . . . D 2 60.408 27.705 73.901 1 27.44 ? C8 MT4 2 B 1 HETATM 8 C C10 MT4 . . . D 2 59.146 28.984 71.775 1 26 ? C10 MT4 2 B 1 HETATM 9 C C13 MT4 . . . D 2 61.147 26.652 80.758 1 29.42 ? C13 MT4 2 B 1 HETATM 10 C C15 MT4 . . . D 2 61.944 24.688 81.9 1 28.95 ? C15 MT4 2 B 1 HETATM 11 C C17 MT4 . . . D 2 61.103 24.544 79.603 1 28.61 ? C17 MT4 2 B 1 HETATM 12 C C20 MT4 . . . D 2 63.727 23.155 85.382 1 29.49 ? C20 MT4 2 B 1 HETATM 13 C C21 MT4 . . . D 2 63.236 24.923 83.932 1 29.36 ? C21 MT4 2 B 1 HETATM 14 C C22 MT4 . . . D 2 62.909 20.816 84.902 1 28.76 ? C22 MT4 2 B 1 HETATM 15 C C24 MT4 . . . D 2 65.135 23.42 88.601 1 29.69 ? C24 MT4 2 B 1 HETATM 16 C C26 MT4 . . . D 2 67.277 24.538 88.692 1 30.46 ? C26 MT4 2 B 1 HETATM 17 C C28 MT4 . . . D 2 66.403 23.791 86.575 1 29.51 ? C28 MT4 2 B 1 HETATM 18 O O2 MT4 . . . D 2 58.357 28.415 72.83 1 27.07 ? O2 MT4 2 B 1 HETATM 19 O O1 MT4 . . . D 2 57.011 28.157 75.139 1 27.21 ? O1 MT4 2 B 1 HETATM 20 C C11 MT4 . . . D 2 56.522 28.477 76.45 1 29.38 ? C11 MT4 2 B 1 HETATM 21 C C9 MT4 . . . D 2 59.007 27.443 76.287 1 26.83 ? C9 MT4 2 B 1 HETATM 22 C C1 MT4 . . . D 2 60.372 27.156 76.247 1 27.29 ? C1 MT4 2 B 1 HETATM 23 C C2 MT4 . . . D 2 61.075 27.287 75.049 1 26.73 ? C2 MT4 2 B 1 HETATM 24 C C3 MT4 . . . D 2 63.047 26.59 76.07 1 26.74 ? C3 MT4 2 B 1 HETATM 25 O O3 MT4 . . . D 2 60.323 26.607 78.556 1 27.84 ? O3 MT4 2 B 1 HETATM 26 C C12 MT4 . . . D 2 60.866 25.922 79.614 1 29.37 ? C12 MT4 2 B 1 HETATM 27 C C14 MT4 . . . D 2 61.682 26.056 81.892 1 28.03 ? C14 MT4 2 B 1 HETATM 28 F F2 MT4 . . . D 2 60.882 27.968 80.737 1 31.43 ? F2 MT4 2 B 1 HETATM 29 C C16 MT4 . . . D 2 61.654 23.953 80.744 1 29 ? C16 MT4 2 B 1 HETATM 30 C C18 MT4 . . . D 2 62.507 24.103 83.055 1 29.4 ? C18 MT4 2 B 1 HETATM 31 C C19 MT4 . . . D 2 62.396 22.739 83.374 1 29.41 ? C19 MT4 2 B 1 HETATM 32 O O4 MT4 . . . D 2 61.778 21.947 82.661 1 29.18 ? O4 MT4 2 B 1 HETATM 33 N N2 MT4 . . . D 2 63.017 22.258 84.548 1 29.87 ? N2 MT4 2 B 1 HETATM 34 N N4 MT4 . . . D 2 64.302 22.686 86.501 1 29.93 ? N4 MT4 2 B 1 HETATM 35 C C23 MT4 . . . D 2 65.265 23.297 87.21 1 30.2 ? C23 MT4 2 B 1 HETATM 36 C C25 MT4 . . . D 2 66.144 24.044 89.343 1 29.72 ? C25 MT4 2 B 1 HETATM 37 F F1 MT4 . . . D 2 68.269 25.141 89.38 1 31.01 ? F1 MT4 2 B 1 HETATM 38 C C27 MT4 . . . D 2 67.404 24.414 87.309 1 30.02 ? C27 MT4 2 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 244 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 38 #