data_3EFL # _model_server_result.job_id '_ODPDEBoKnISRiOkQPgatA' _model_server_result.datetime_utc '2024-11-04 20:18:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3efl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 3EFL # _exptl.entry_id 3EFL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 373.451 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(3,3-dimethyl-2,3-dihydro-1H-indol-6-yl)-2-[(pyridin-4-ylmethyl)amino]pyridine-3-carboxamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.27 _cell.angle_gamma 90 _cell.entry_id 3EFL _cell.length_a 55.59 _cell.length_b 66.81 _cell.length_c 91.42 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EFL _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C22 H23 N5 O' _chem_comp.formula_weight 373.451 _chem_comp.id 706 _chem_comp.mon_nstd_flag . _chem_comp.name N-(3,3-dimethyl-2,3-dihydro-1H-indol-6-yl)-2-[(pyridin-4-ylmethyl)amino]pyridine-3-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C1 706 sing 1 n n C1 C3 706 sing 2 n n C1 C28 706 sing 3 n n C1 C25 706 sing 4 n n C28 N27 706 sing 5 n n N27 C26 706 sing 6 n n C26 C22 706 doub 7 n y C26 C25 706 sing 8 n y C22 C13 706 sing 9 n y C25 C23 706 doub 10 n y C23 C24 706 sing 11 n y C24 C13 706 doub 12 n y C13 N12 706 sing 13 n n N12 C10 706 sing 14 n n C10 O11 706 doub 15 n n C10 C8 706 sing 16 n n C8 C9 706 doub 17 n y C8 C7 706 sing 18 n y C9 C4 706 sing 19 n y C4 C5 706 doub 20 n y C5 N6 706 sing 21 n y N6 C7 706 doub 22 n y C7 N14 706 sing 23 n n N14 C15 706 sing 24 n n C15 C16 706 sing 25 n n C16 C17 706 doub 26 n y C16 C21 706 sing 27 n y C17 C18 706 sing 28 n y C18 N19 706 doub 29 n y N19 C20 706 sing 30 n y C20 C21 706 doub 31 n y C2 H2 706 sing 32 n n C2 H2A 706 sing 33 n n C2 H2B 706 sing 34 n n C3 H3 706 sing 35 n n C3 H3A 706 sing 36 n n C3 H3B 706 sing 37 n n C28 H28 706 sing 38 n n C28 H28A 706 sing 39 n n N27 HN27 706 sing 40 n n C22 H22 706 sing 41 n n C23 H23 706 sing 42 n n C24 H24 706 sing 43 n n N12 HN12 706 sing 44 n n C9 H9 706 sing 45 n n C4 H4 706 sing 46 n n C5 H5 706 sing 47 n n N14 HN14 706 sing 48 n n C15 H15 706 sing 49 n n C15 H15A 706 sing 50 n n C17 H17 706 sing 51 n n C18 H18 706 sing 52 n n C20 H20 706 sing 53 n n C21 H21 706 sing 54 n n # _atom_sites.entry_id 3EFL _atom_sites.fract_transf_matrix[1][1] 0.017989 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001028 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014968 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010956 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 706 A 1 501 501 706 706 . D 2 706 B 1 502 502 706 706 . E 3 HOH A 1 1 1 HOH WAT . E 3 HOH A 2 2 2 HOH WAT . E 3 HOH A 3 3 3 HOH WAT . E 3 HOH A 4 4 4 HOH WAT . E 3 HOH A 5 5 5 HOH WAT . E 3 HOH A 6 6 6 HOH WAT . E 3 HOH A 7 7 7 HOH WAT . E 3 HOH A 8 8 8 HOH WAT . E 3 HOH A 9 9 9 HOH WAT . E 3 HOH A 10 10 10 HOH WAT . E 3 HOH A 11 11 11 HOH WAT . E 3 HOH A 12 12 12 HOH WAT . E 3 HOH A 13 13 13 HOH WAT . E 3 HOH A 14 14 14 HOH WAT . E 3 HOH A 15 15 15 HOH WAT . E 3 HOH A 16 16 16 HOH WAT . E 3 HOH A 17 20 20 HOH WAT . E 3 HOH A 18 21 21 HOH WAT . E 3 HOH A 19 22 22 HOH WAT . E 3 HOH A 20 25 25 HOH WAT . E 3 HOH A 21 26 26 HOH WAT . E 3 HOH A 22 28 28 HOH WAT . E 3 HOH A 23 29 29 HOH WAT . E 3 HOH A 24 31 31 HOH WAT . E 3 HOH A 25 32 32 HOH WAT . E 3 HOH A 26 33 33 HOH WAT . E 3 HOH A 27 34 34 HOH WAT . E 3 HOH A 28 35 35 HOH WAT . E 3 HOH A 29 36 36 HOH WAT . E 3 HOH A 30 39 39 HOH WAT . E 3 HOH A 31 40 40 HOH WAT . E 3 HOH A 32 44 44 HOH WAT . E 3 HOH A 33 47 47 HOH WAT . E 3 HOH A 34 48 48 HOH WAT . E 3 HOH A 35 49 49 HOH WAT . E 3 HOH A 36 51 51 HOH WAT . E 3 HOH A 37 52 52 HOH WAT . E 3 HOH A 38 53 53 HOH WAT . E 3 HOH A 39 54 54 HOH WAT . E 3 HOH A 40 57 57 HOH WAT . E 3 HOH A 41 63 63 HOH WAT . E 3 HOH A 42 64 64 HOH WAT . E 3 HOH A 43 65 65 HOH WAT . E 3 HOH A 44 66 66 HOH WAT . E 3 HOH A 45 71 71 HOH WAT . E 3 HOH A 46 72 72 HOH WAT . E 3 HOH A 47 73 73 HOH WAT . E 3 HOH A 48 74 74 HOH WAT . E 3 HOH A 49 76 76 HOH WAT . E 3 HOH A 50 81 81 HOH WAT . E 3 HOH A 51 88 88 HOH WAT . E 3 HOH A 52 89 89 HOH WAT . E 3 HOH A 53 90 90 HOH WAT . E 3 HOH A 54 91 91 HOH WAT . E 3 HOH A 55 92 92 HOH WAT . E 3 HOH A 56 93 93 HOH WAT . E 3 HOH A 57 94 94 HOH WAT . E 3 HOH A 58 95 95 HOH WAT . E 3 HOH A 59 97 97 HOH WAT . E 3 HOH A 60 98 98 HOH WAT . E 3 HOH A 61 99 99 HOH WAT . E 3 HOH A 62 100 100 HOH WAT . E 3 HOH A 63 101 101 HOH WAT . E 3 HOH A 64 102 102 HOH WAT . E 3 HOH A 65 103 103 HOH WAT . E 3 HOH A 66 104 104 HOH WAT . E 3 HOH A 67 105 105 HOH WAT . E 3 HOH A 68 106 106 HOH WAT . E 3 HOH A 69 115 115 HOH WAT . E 3 HOH A 70 117 117 HOH WAT . E 3 HOH A 71 118 118 HOH WAT . E 3 HOH A 72 119 119 HOH WAT . E 3 HOH A 73 120 120 HOH WAT . E 3 HOH A 74 121 121 HOH WAT . E 3 HOH A 75 122 122 HOH WAT . E 3 HOH A 76 123 123 HOH WAT . E 3 HOH A 77 126 126 HOH WAT . E 3 HOH A 78 128 128 HOH WAT . E 3 HOH A 79 130 130 HOH WAT . E 3 HOH A 80 131 131 HOH WAT . E 3 HOH A 81 132 132 HOH WAT . E 3 HOH A 82 138 138 HOH WAT . E 3 HOH A 83 139 139 HOH WAT . E 3 HOH A 84 141 141 HOH WAT . E 3 HOH A 85 145 145 HOH WAT . E 3 HOH A 86 147 147 HOH WAT . E 3 HOH A 87 150 150 HOH WAT . E 3 HOH A 88 151 151 HOH WAT . E 3 HOH A 89 152 152 HOH WAT . E 3 HOH A 90 158 158 HOH WAT . E 3 HOH A 91 159 159 HOH WAT . E 3 HOH A 92 165 165 HOH WAT . E 3 HOH A 93 169 169 HOH WAT . E 3 HOH A 94 174 174 HOH WAT . E 3 HOH A 95 177 177 HOH WAT . E 3 HOH A 96 178 178 HOH WAT . E 3 HOH A 97 179 179 HOH WAT . E 3 HOH A 98 181 181 HOH WAT . E 3 HOH A 99 183 183 HOH WAT . E 3 HOH A 100 184 184 HOH WAT . F 3 HOH B 1 17 17 HOH WAT . F 3 HOH B 2 18 18 HOH WAT . F 3 HOH B 3 23 23 HOH WAT . F 3 HOH B 4 27 27 HOH WAT . F 3 HOH B 5 37 37 HOH WAT . F 3 HOH B 6 38 38 HOH WAT . F 3 HOH B 7 41 41 HOH WAT . F 3 HOH B 8 43 43 HOH WAT . F 3 HOH B 9 50 50 HOH WAT . F 3 HOH B 10 56 56 HOH WAT . F 3 HOH B 11 58 58 HOH WAT . F 3 HOH B 12 59 59 HOH WAT . F 3 HOH B 13 62 62 HOH WAT . F 3 HOH B 14 75 75 HOH WAT . F 3 HOH B 15 80 80 HOH WAT . F 3 HOH B 16 82 82 HOH WAT . F 3 HOH B 17 83 83 HOH WAT . F 3 HOH B 18 84 84 HOH WAT . F 3 HOH B 19 85 85 HOH WAT . F 3 HOH B 20 86 86 HOH WAT . F 3 HOH B 21 87 87 HOH WAT . F 3 HOH B 22 96 96 HOH WAT . F 3 HOH B 23 107 107 HOH WAT . F 3 HOH B 24 108 108 HOH WAT . F 3 HOH B 25 109 109 HOH WAT . F 3 HOH B 26 110 110 HOH WAT . F 3 HOH B 27 112 112 HOH WAT . F 3 HOH B 28 113 113 HOH WAT . F 3 HOH B 29 114 114 HOH WAT . F 3 HOH B 30 116 116 HOH WAT . F 3 HOH B 31 124 124 HOH WAT . F 3 HOH B 32 134 134 HOH WAT . F 3 HOH B 33 135 135 HOH WAT . F 3 HOH B 34 142 142 HOH WAT . F 3 HOH B 35 143 143 HOH WAT . F 3 HOH B 36 144 144 HOH WAT . F 3 HOH B 37 148 148 HOH WAT . F 3 HOH B 38 154 154 HOH WAT . F 3 HOH B 39 155 155 HOH WAT . F 3 HOH B 40 166 166 HOH WAT . F 3 HOH B 41 180 180 HOH WAT . F 3 HOH B 42 182 182 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 706 . . . C 2 40.448 40.89 11.635 1 29.17 ? C2 706 501 A 1 HETATM 2 C C1 706 . . . C 2 39.049 40.671 11.057 1 30.29 ? C1 706 501 A 1 HETATM 3 C C3 706 . . . C 2 39.004 40.961 9.555 1 30.63 ? C3 706 501 A 1 HETATM 4 C C28 706 . . . C 2 38.012 41.51 11.802 1 30.07 ? C28 706 501 A 1 HETATM 5 N N27 706 . . . C 2 37.353 40.551 12.702 1 30.28 ? N27 706 501 A 1 HETATM 6 C C26 706 . . . C 2 37.659 39.29 12.399 1 28.78 ? C26 706 501 A 1 HETATM 7 C C22 706 . . . C 2 37.113 38.104 12.882 1 28.75 ? C22 706 501 A 1 HETATM 8 C C25 706 . . . C 2 38.569 39.247 11.343 1 29.62 ? C25 706 501 A 1 HETATM 9 C C23 706 . . . C 2 38.924 38.025 10.778 1 27.81 ? C23 706 501 A 1 HETATM 10 C C24 706 . . . C 2 38.367 36.845 11.261 1 29.48 ? C24 706 501 A 1 HETATM 11 C C13 706 . . . C 2 37.453 36.879 12.312 1 28.41 ? C13 706 501 A 1 HETATM 12 N N12 706 . . . C 2 36.817 35.772 12.688 1 25.92 ? N12 706 501 A 1 HETATM 13 C C10 706 . . . C 2 37.444 34.633 12.977 1 25.95 ? C10 706 501 A 1 HETATM 14 O O11 706 . . . C 2 38.665 34.486 12.95 1 27.88 ? O11 706 501 A 1 HETATM 15 C C8 706 . . . C 2 36.529 33.467 13.362 1 25 ? C8 706 501 A 1 HETATM 16 C C9 706 . . . C 2 35.167 33.518 13.087 1 22.13 ? C9 706 501 A 1 HETATM 17 C C4 706 . . . C 2 34.366 32.423 13.397 1 21.71 ? C4 706 501 A 1 HETATM 18 C C5 706 . . . C 2 34.952 31.301 13.975 1 21.52 ? C5 706 501 A 1 HETATM 19 N N6 706 . . . C 2 36.25 31.28 14.226 1 24.87 ? N6 706 501 A 1 HETATM 20 C C7 706 . . . C 2 37.055 32.317 13.945 1 23.8 ? C7 706 501 A 1 HETATM 21 N N14 706 . . . C 2 38.357 32.249 14.218 1 25.44 ? N14 706 501 A 1 HETATM 22 C C15 706 . . . C 2 38.918 31.13 14.99 1 22.98 ? C15 706 501 A 1 HETATM 23 C C16 706 . . . C 2 39.43 30.036 14.049 1 21.67 ? C16 706 501 A 1 HETATM 24 C C17 706 . . . C 2 39.428 30.228 12.67 1 20.37 ? C17 706 501 A 1 HETATM 25 C C18 706 . . . C 2 39.875 29.196 11.852 1 20.7 ? C18 706 501 A 1 HETATM 26 N N19 706 . . . C 2 40.295 28.057 12.379 1 23.46 ? N19 706 501 A 1 HETATM 27 C C20 706 . . . C 2 40.314 27.841 13.684 1 22.57 ? C20 706 501 A 1 HETATM 28 C C21 706 . . . C 2 39.881 28.825 14.567 1 21.72 ? C21 706 501 A 1 # _model_server_stats.io_time_ms 72 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #