data_3EFR # _model_server_result.job_id Sx04WKbmqNNdkiAnHQ2-xQ _model_server_result.datetime_utc '2025-01-02 23:09:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3efr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1001}' # _entry.id 3EFR # _exptl.entry_id 3EFR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 244.311 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BIOTIN _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3EFR _cell.length_a 41.251 _cell.length_b 79.928 _cell.length_c 140.173 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EFR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,I 1 1 B,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # _chem_comp.formula 'C10 H16 N2 O3 S' _chem_comp.formula_weight 244.311 _chem_comp.id BTN _chem_comp.mon_nstd_flag . _chem_comp.name BIOTIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C11 O11 BTN doub 70 n n C11 O12 BTN sing 71 n n C11 C10 BTN sing 72 n n O12 HO2 BTN sing 73 n n C10 C9 BTN sing 74 n n C10 H101 BTN sing 75 n n C10 H102 BTN sing 76 n n C9 C8 BTN sing 77 n n C9 H91 BTN sing 78 n n C9 H92 BTN sing 79 n n C8 C7 BTN sing 80 n n C8 H81 BTN sing 81 n n C8 H82 BTN sing 82 n n C7 C2 BTN sing 83 n n C7 H71 BTN sing 84 n n C7 H72 BTN sing 85 n n C2 S1 BTN sing 86 n n C2 C4 BTN sing 87 n n C2 H2 BTN sing 88 n n S1 C6 BTN sing 89 n n C6 C5 BTN sing 90 n n C6 H61 BTN sing 91 n n C6 H62 BTN sing 92 n n C5 N1 BTN sing 93 n n C5 C4 BTN sing 94 n n C5 H5 BTN sing 95 n n N1 C3 BTN sing 96 n n N1 HN1 BTN sing 97 n n C3 O3 BTN doub 98 n n C3 N2 BTN sing 99 n n N2 C4 BTN sing 100 n n N2 HN2 BTN sing 101 n n C4 H4 BTN sing 102 n n # _atom_sites.entry_id 3EFR _atom_sites.fract_transf_matrix[1][1] 0.024242 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012511 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007134 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BTN A 1 1001 1001 BTN BTN . D 3 SO4 A 1 1002 1002 SO4 SO4 . E 3 SO4 A 1 1003 1003 SO4 SO4 . F 3 SO4 A 1 1004 1003 SO4 SO4 . G 2 BTN B 1 1001 1001 BTN BTN . H 3 SO4 B 1 1002 1002 SO4 SO4 . I 4 HOH A 1 1005 1 HOH HOH . I 4 HOH A 2 1006 2 HOH HOH . I 4 HOH A 3 1007 3 HOH HOH . I 4 HOH A 4 1008 4 HOH HOH . I 4 HOH A 5 1009 9 HOH HOH . I 4 HOH A 6 1010 10 HOH HOH . I 4 HOH A 7 1011 11 HOH HOH . I 4 HOH A 8 1012 12 HOH HOH . I 4 HOH A 9 1013 14 HOH HOH . I 4 HOH A 10 1014 15 HOH HOH . I 4 HOH A 11 1015 17 HOH HOH . I 4 HOH A 12 1016 22 HOH HOH . I 4 HOH A 13 1017 27 HOH HOH . I 4 HOH A 14 1018 29 HOH HOH . I 4 HOH A 15 1019 30 HOH HOH . I 4 HOH A 16 1020 31 HOH HOH . I 4 HOH A 17 1021 33 HOH HOH . I 4 HOH A 18 1022 37 HOH HOH . I 4 HOH A 19 1023 38 HOH HOH . I 4 HOH A 20 1024 40 HOH HOH . I 4 HOH A 21 1025 41 HOH HOH . I 4 HOH A 22 1026 47 HOH HOH . I 4 HOH A 23 1027 48 HOH HOH . I 4 HOH A 24 1028 50 HOH HOH . I 4 HOH A 25 1029 51 HOH HOH . I 4 HOH A 26 1030 53 HOH HOH . I 4 HOH A 27 1031 54 HOH HOH . I 4 HOH A 28 1032 55 HOH HOH . I 4 HOH A 29 1033 60 HOH HOH . I 4 HOH A 30 1034 62 HOH HOH . I 4 HOH A 31 1035 64 HOH HOH . I 4 HOH A 32 1036 65 HOH HOH . I 4 HOH A 33 1037 70 HOH HOH . I 4 HOH A 34 1038 71 HOH HOH . I 4 HOH A 35 1039 74 HOH HOH . I 4 HOH A 36 1040 75 HOH HOH . I 4 HOH A 37 1041 80 HOH HOH . I 4 HOH A 38 1042 81 HOH HOH . I 4 HOH A 39 1043 82 HOH HOH . I 4 HOH A 40 1044 83 HOH HOH . I 4 HOH A 41 1045 76 HOH HOH . J 4 HOH B 1 1003 5 HOH HOH . J 4 HOH B 2 1004 6 HOH HOH . J 4 HOH B 3 1005 7 HOH HOH . J 4 HOH B 4 1006 18 HOH HOH . J 4 HOH B 5 1007 20 HOH HOH . J 4 HOH B 6 1008 21 HOH HOH . J 4 HOH B 7 1009 23 HOH HOH . J 4 HOH B 8 1010 25 HOH HOH . J 4 HOH B 9 1011 28 HOH HOH . J 4 HOH B 10 1012 36 HOH HOH . J 4 HOH B 11 1013 39 HOH HOH . J 4 HOH B 12 1014 42 HOH HOH . J 4 HOH B 13 1015 43 HOH HOH . J 4 HOH B 14 1016 44 HOH HOH . J 4 HOH B 15 1017 45 HOH HOH . J 4 HOH B 16 1018 52 HOH HOH . J 4 HOH B 17 1019 56 HOH HOH . J 4 HOH B 18 1020 57 HOH HOH . J 4 HOH B 19 1021 58 HOH HOH . J 4 HOH B 20 1022 59 HOH HOH . J 4 HOH B 21 1023 61 HOH HOH . J 4 HOH B 22 1024 63 HOH HOH . J 4 HOH B 23 1025 66 HOH HOH . J 4 HOH B 24 1026 67 HOH HOH . J 4 HOH B 25 1027 68 HOH HOH . J 4 HOH B 26 1028 69 HOH HOH . J 4 HOH B 27 1029 72 HOH HOH . J 4 HOH B 28 1030 73 HOH HOH . J 4 HOH B 29 1032 77 HOH HOH . J 4 HOH B 30 1033 78 HOH HOH . J 4 HOH B 31 1034 79 HOH HOH . J 4 HOH B 32 1035 84 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 BTN . . . G 2 14.015 -3.859 -13.603 1 55.55 ? C11 BTN 1001 B 1 HETATM 2 O O11 BTN . . . G 2 13.537 -4.274 -12.524 1 45.66 ? O11 BTN 1001 B 1 HETATM 3 O O12 BTN . . . G 2 15.226 -3.546 -13.642 1 53.66 ? O12 BTN 1001 B 1 HETATM 4 C C10 BTN . . . G 2 13.138 -3.726 -14.829 1 48.79 ? C10 BTN 1001 B 1 HETATM 5 C C9 BTN . . . G 2 13.864 -4.303 -16.039 1 44.11 ? C9 BTN 1001 B 1 HETATM 6 C C8 BTN . . . G 2 14.414 -3.193 -16.927 1 37.99 ? C8 BTN 1001 B 1 HETATM 7 C C7 BTN . . . G 2 13.317 -2.614 -17.811 1 37.61 ? C7 BTN 1001 B 1 HETATM 8 C C2 BTN . . . G 2 13.086 -3.513 -19.02 1 37.32 ? C2 BTN 1001 B 1 HETATM 9 S S1 BTN . . . G 2 14.5 -3.595 -19.913 1 33.67 ? S1 BTN 1001 B 1 HETATM 10 C C6 BTN . . . G 2 13.605 -3.726 -21.482 1 29.53 ? C6 BTN 1001 B 1 HETATM 11 C C5 BTN . . . G 2 12.196 -3.189 -21.334 1 35.44 ? C5 BTN 1001 B 1 HETATM 12 N N1 BTN . . . G 2 12.082 -1.842 -21.85 1 29.46 ? N1 BTN 1001 B 1 HETATM 13 C C3 BTN . . . G 2 11.879 -0.959 -20.88 1 31.68 ? C3 BTN 1001 B 1 HETATM 14 O O3 BTN . . . G 2 11.83 0.439 -21.053 1 35.98 ? O3 BTN 1001 B 1 HETATM 15 N N2 BTN . . . G 2 11.74 -1.579 -19.717 1 33.03 ? N2 BTN 1001 B 1 HETATM 16 C C4 BTN . . . G 2 11.913 -3.011 -19.855 1 35.35 ? C4 BTN 1001 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 352 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 16 #