data_3EFS # _model_server_result.job_id c-bm17iSIEWjpXY44dmoaw _model_server_result.datetime_utc '2024-11-05 00:25:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3efs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1001}' # _entry.id 3EFS # _exptl.entry_id 3EFS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3EFS _cell.length_a 41.225 _cell.length_b 81.695 _cell.length_c 143.278 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EFS _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,J 1 1 B,G,H,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 3EFS _atom_sites.fract_transf_matrix[1][1] 0.024257 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012241 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006979 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ATP A 1 1001 1001 ATP ATP . D 3 BTN A 1 2001 2001 BTN BTN . E 4 SO4 A 1 2002 2 SO4 SO4 . F 4 SO4 A 1 2003 3 SO4 SO4 . G 2 ATP B 1 1001 1001 ATP ATP . H 3 BTN B 1 2001 2001 BTN BTN . I 4 SO4 B 1 2002 1 SO4 SO4 . J 5 HOH A 1 2005 20 HOH HOH . J 5 HOH A 2 2006 21 HOH HOH . J 5 HOH A 3 2007 22 HOH HOH . J 5 HOH A 4 2008 23 HOH HOH . J 5 HOH A 5 2009 24 HOH HOH . J 5 HOH A 6 2010 25 HOH HOH . J 5 HOH A 7 2011 26 HOH HOH . J 5 HOH A 8 2012 29 HOH HOH . J 5 HOH A 9 2013 30 HOH HOH . J 5 HOH A 10 2014 32 HOH HOH . J 5 HOH A 11 2015 33 HOH HOH . J 5 HOH A 12 2016 34 HOH HOH . J 5 HOH A 13 2017 35 HOH HOH . J 5 HOH A 14 2018 36 HOH HOH . J 5 HOH A 15 2019 37 HOH HOH . J 5 HOH A 16 2020 39 HOH HOH . J 5 HOH A 17 2021 43 HOH HOH . J 5 HOH A 18 2022 46 HOH HOH . J 5 HOH A 19 2023 47 HOH HOH . J 5 HOH A 20 2024 48 HOH HOH . J 5 HOH A 21 2025 53 HOH HOH . J 5 HOH A 22 2026 55 HOH HOH . J 5 HOH A 23 2027 59 HOH HOH . J 5 HOH A 24 2028 60 HOH HOH . J 5 HOH A 25 2029 61 HOH HOH . J 5 HOH A 26 2030 62 HOH HOH . J 5 HOH A 27 2031 63 HOH HOH . J 5 HOH A 28 2032 64 HOH HOH . J 5 HOH A 29 2033 65 HOH HOH . J 5 HOH A 30 2034 66 HOH HOH . J 5 HOH A 31 2035 161 HOH HOH . J 5 HOH A 32 2036 163 HOH HOH . J 5 HOH A 33 2037 164 HOH HOH . J 5 HOH A 34 2038 165 HOH HOH . J 5 HOH A 35 2039 167 HOH HOH . J 5 HOH A 36 2040 169 HOH HOH . J 5 HOH A 37 2041 170 HOH HOH . J 5 HOH A 38 2042 173 HOH HOH . J 5 HOH A 39 2043 174 HOH HOH . J 5 HOH A 40 2044 175 HOH HOH . J 5 HOH A 41 2045 178 HOH HOH . J 5 HOH A 42 2046 180 HOH HOH . J 5 HOH A 43 2047 181 HOH HOH . J 5 HOH A 44 2048 182 HOH HOH . J 5 HOH A 45 2049 183 HOH HOH . J 5 HOH A 46 2050 184 HOH HOH . J 5 HOH A 47 2051 185 HOH HOH . J 5 HOH A 48 2052 187 HOH HOH . J 5 HOH A 49 2053 4 HOH HOH . J 5 HOH A 50 2054 5 HOH HOH . J 5 HOH A 51 2055 7 HOH HOH . J 5 HOH A 52 2056 8 HOH HOH . J 5 HOH A 53 2057 9 HOH HOH . J 5 HOH A 54 2058 14 HOH HOH . J 5 HOH A 55 2059 17 HOH HOH . J 5 HOH A 56 2060 18 HOH HOH . J 5 HOH A 57 2061 72 HOH HOH . J 5 HOH A 58 2062 73 HOH HOH . J 5 HOH A 59 2063 74 HOH HOH . J 5 HOH A 60 2064 75 HOH HOH . J 5 HOH A 61 2065 79 HOH HOH . J 5 HOH A 62 2066 81 HOH HOH . J 5 HOH A 63 2067 89 HOH HOH . J 5 HOH A 64 2068 91 HOH HOH . J 5 HOH A 65 2069 92 HOH HOH . J 5 HOH A 66 2070 93 HOH HOH . J 5 HOH A 67 2071 96 HOH HOH . J 5 HOH A 68 2072 97 HOH HOH . J 5 HOH A 69 2073 99 HOH HOH . J 5 HOH A 70 2074 103 HOH HOH . J 5 HOH A 71 2075 104 HOH HOH . J 5 HOH A 72 2076 106 HOH HOH . J 5 HOH A 73 2077 108 HOH HOH . J 5 HOH A 74 2078 110 HOH HOH . J 5 HOH A 75 2079 112 HOH HOH . J 5 HOH A 76 2080 114 HOH HOH . J 5 HOH A 77 2081 115 HOH HOH . J 5 HOH A 78 2082 117 HOH HOH . J 5 HOH A 79 2083 118 HOH HOH . J 5 HOH A 80 2084 120 HOH HOH . J 5 HOH A 81 2085 122 HOH HOH . J 5 HOH A 82 2086 124 HOH HOH . J 5 HOH A 83 2087 128 HOH HOH . J 5 HOH A 84 2088 129 HOH HOH . J 5 HOH A 85 2089 130 HOH HOH . J 5 HOH A 86 2090 132 HOH HOH . J 5 HOH A 87 2091 133 HOH HOH . J 5 HOH A 88 2092 134 HOH HOH . J 5 HOH A 89 2093 135 HOH HOH . J 5 HOH A 90 2094 136 HOH HOH . J 5 HOH A 91 2095 138 HOH HOH . J 5 HOH A 92 2096 142 HOH HOH . J 5 HOH A 93 2097 143 HOH HOH . J 5 HOH A 94 2098 145 HOH HOH . J 5 HOH A 95 2099 148 HOH HOH . J 5 HOH A 96 2100 155 HOH HOH . J 5 HOH A 97 2101 156 HOH HOH . J 5 HOH A 98 2102 157 HOH HOH . J 5 HOH A 99 2103 159 HOH HOH . K 5 HOH B 1 2004 19 HOH HOH . K 5 HOH B 2 2005 27 HOH HOH . K 5 HOH B 3 2006 28 HOH HOH . K 5 HOH B 4 2007 31 HOH HOH . K 5 HOH B 5 2008 38 HOH HOH . K 5 HOH B 6 2009 40 HOH HOH . K 5 HOH B 7 2010 41 HOH HOH . K 5 HOH B 8 2011 42 HOH HOH . K 5 HOH B 9 2012 44 HOH HOH . K 5 HOH B 10 2013 45 HOH HOH . K 5 HOH B 11 2014 49 HOH HOH . K 5 HOH B 12 2015 50 HOH HOH . K 5 HOH B 13 2016 51 HOH HOH . K 5 HOH B 14 2017 52 HOH HOH . K 5 HOH B 15 2018 54 HOH HOH . K 5 HOH B 16 2019 56 HOH HOH . K 5 HOH B 17 2020 57 HOH HOH . K 5 HOH B 18 2021 58 HOH HOH . K 5 HOH B 19 2022 162 HOH HOH . K 5 HOH B 20 2023 166 HOH HOH . K 5 HOH B 21 2024 168 HOH HOH . K 5 HOH B 22 2025 171 HOH HOH . K 5 HOH B 23 2026 172 HOH HOH . K 5 HOH B 24 2027 176 HOH HOH . K 5 HOH B 25 2028 177 HOH HOH . K 5 HOH B 26 2029 179 HOH HOH . K 5 HOH B 27 2030 186 HOH HOH . K 5 HOH B 28 2031 1 HOH HOH . K 5 HOH B 29 2032 2 HOH HOH . K 5 HOH B 30 2033 3 HOH HOH . K 5 HOH B 31 2034 6 HOH HOH . K 5 HOH B 32 2035 10 HOH HOH . K 5 HOH B 33 2036 11 HOH HOH . K 5 HOH B 34 2037 12 HOH HOH . K 5 HOH B 35 2038 13 HOH HOH . K 5 HOH B 36 2039 15 HOH HOH . K 5 HOH B 37 2040 16 HOH HOH . K 5 HOH B 38 2041 67 HOH HOH . K 5 HOH B 39 2042 68 HOH HOH . K 5 HOH B 40 2043 69 HOH HOH . K 5 HOH B 41 2044 70 HOH HOH . K 5 HOH B 42 2045 71 HOH HOH . K 5 HOH B 43 2046 76 HOH HOH . K 5 HOH B 44 2047 77 HOH HOH . K 5 HOH B 45 2048 78 HOH HOH . K 5 HOH B 46 2049 80 HOH HOH . K 5 HOH B 47 2050 82 HOH HOH . K 5 HOH B 48 2051 83 HOH HOH . K 5 HOH B 49 2052 84 HOH HOH . K 5 HOH B 50 2053 85 HOH HOH . K 5 HOH B 51 2054 86 HOH HOH . K 5 HOH B 52 2055 87 HOH HOH . K 5 HOH B 53 2056 88 HOH HOH . K 5 HOH B 54 2057 90 HOH HOH . K 5 HOH B 55 2058 94 HOH HOH . K 5 HOH B 56 2059 95 HOH HOH . K 5 HOH B 57 2060 98 HOH HOH . K 5 HOH B 58 2061 100 HOH HOH . K 5 HOH B 59 2062 101 HOH HOH . K 5 HOH B 60 2063 102 HOH HOH . K 5 HOH B 61 2064 105 HOH HOH . K 5 HOH B 62 2065 107 HOH HOH . K 5 HOH B 63 2066 109 HOH HOH . K 5 HOH B 64 2067 111 HOH HOH . K 5 HOH B 65 2068 113 HOH HOH . K 5 HOH B 66 2069 116 HOH HOH . K 5 HOH B 67 2070 119 HOH HOH . K 5 HOH B 68 2071 121 HOH HOH . K 5 HOH B 69 2072 123 HOH HOH . K 5 HOH B 70 2073 125 HOH HOH . K 5 HOH B 71 2074 126 HOH HOH . K 5 HOH B 72 2075 127 HOH HOH . K 5 HOH B 73 2076 131 HOH HOH . K 5 HOH B 74 2077 137 HOH HOH . K 5 HOH B 75 2078 139 HOH HOH . K 5 HOH B 76 2079 140 HOH HOH . K 5 HOH B 77 2080 141 HOH HOH . K 5 HOH B 78 2081 144 HOH HOH . K 5 HOH B 79 2082 146 HOH HOH . K 5 HOH B 80 2083 147 HOH HOH . K 5 HOH B 81 2084 149 HOH HOH . K 5 HOH B 82 2085 150 HOH HOH . K 5 HOH B 83 2086 151 HOH HOH . K 5 HOH B 84 2087 152 HOH HOH . K 5 HOH B 85 2088 153 HOH HOH . K 5 HOH B 86 2089 154 HOH HOH . K 5 HOH B 87 2090 158 HOH HOH . K 5 HOH B 88 2091 160 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . C 2 -11.632 -3.567 5.134 1 184.28 ? PG ATP 1001 A 1 HETATM 2 O O1G ATP . . . C 2 -12.608 -4.254 6.058 1 182.91 ? O1G ATP 1001 A 1 HETATM 3 O O2G ATP . . . C 2 -10.368 -4.347 4.864 1 185.07 ? O2G ATP 1001 A 1 HETATM 4 O O3G ATP . . . C 2 -12.267 -2.958 3.908 1 183.42 ? O3G ATP 1001 A 1 HETATM 5 P PB ATP . . . C 2 -10.243 -2.475 7.314 1 163.06 ? PB ATP 1001 A 1 HETATM 6 O O1B ATP . . . C 2 -9.184 -1.397 7.323 1 160.83 ? O1B ATP 1001 A 1 HETATM 7 O O2B ATP . . . C 2 -9.843 -3.926 7.433 1 163.87 ? O2B ATP 1001 A 1 HETATM 8 O O3B ATP . . . C 2 -11.138 -2.295 5.987 1 135.95 ? O3B ATP 1001 A 1 HETATM 9 P PA ATP . . . C 2 -10.988 -1.19 9.713 1 133.52 ? PA ATP 1001 A 1 HETATM 10 O O1A ATP . . . C 2 -10.788 0.211 9.188 1 138.45 ? O1A ATP 1001 A 1 HETATM 11 O O2A ATP . . . C 2 -9.935 -1.83 10.583 1 129.59 ? O2A ATP 1001 A 1 HETATM 12 O O3A ATP . . . C 2 -11.323 -2.144 8.461 1 110.14 ? O3A ATP 1001 A 1 HETATM 13 O O5' ATP . . . C 2 -12.379 -1.207 10.517 1 66.32 ? O5' ATP 1001 A 1 HETATM 14 C C5' ATP . . . C 2 -12.796 -0.044 11.222 1 61.81 ? C5' ATP 1001 A 1 HETATM 15 C C4' ATP . . . C 2 -14.145 0.358 10.645 1 63.39 ? C4' ATP 1001 A 1 HETATM 16 O O4' ATP . . . C 2 -15.176 -0.48 11.168 1 52.67 ? O4' ATP 1001 A 1 HETATM 17 C C3' ATP . . . C 2 -14.522 1.791 10.984 1 71.22 ? C3' ATP 1001 A 1 HETATM 18 O O3' ATP . . . C 2 -14.304 2.632 9.848 1 84.1 ? O3' ATP 1001 A 1 HETATM 19 C C2' ATP . . . C 2 -15.997 1.749 11.331 1 59.19 ? C2' ATP 1001 A 1 HETATM 20 O O2' ATP . . . C 2 -16.752 2.455 10.344 1 58.16 ? O2' ATP 1001 A 1 HETATM 21 C C1' ATP . . . C 2 -16.377 0.276 11.321 1 47.05 ? C1' ATP 1001 A 1 HETATM 22 N N9 ATP . . . C 2 -17.035 -0.072 12.601 1 33.02 ? N9 ATP 1001 A 1 HETATM 23 C C8 ATP . . . C 2 -17.027 0.68 13.718 1 32.86 ? C8 ATP 1001 A 1 HETATM 24 N N7 ATP . . . C 2 -17.73 0.083 14.712 1 24.37 ? N7 ATP 1001 A 1 HETATM 25 C C5 ATP . . . C 2 -18.207 -1.077 14.225 1 16.74 ? C5 ATP 1001 A 1 HETATM 26 C C6 ATP . . . C 2 -19.028 -2.194 14.744 1 15.99 ? C6 ATP 1001 A 1 HETATM 27 N N6 ATP . . . C 2 -19.493 -2.189 16.016 1 17.54 ? N6 ATP 1001 A 1 HETATM 28 N N1 ATP . . . C 2 -19.298 -3.217 13.904 1 22.26 ? N1 ATP 1001 A 1 HETATM 29 C C2 ATP . . . C 2 -18.843 -3.237 12.638 1 14 ? C2 ATP 1001 A 1 HETATM 30 N N3 ATP . . . C 2 -18.093 -2.26 12.101 1 19.82 ? N3 ATP 1001 A 1 HETATM 31 C C4 ATP . . . C 2 -17.752 -1.172 12.83 1 18.16 ? C4 ATP 1001 A 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 71 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #