data_3EG5 # _model_server_result.job_id SdhmPQqK7rnor6CnzRkJdw _model_server_result.datetime_utc '2024-11-22 14:24:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3eg5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":179}' # _entry.id 3EG5 # _exptl.entry_id 3EG5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 522.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3EG5 _cell.length_a 71.269 _cell.length_b 71.269 _cell.length_c 244.964 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EG5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 17 A THR 17 1_555 F MG MG . A MG 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.898 ? metalc ? metalc2 A OG1 THR 35 A THR 35 1_555 F MG MG . A MG 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc3 E O2G GNP . A GNP 179 1_555 F MG MG . A MG 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc4 E O2B GNP . A GNP 179 1_555 F MG MG . A MG 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? metalc ? metalc5 F MG MG . A MG 180 1_555 I O HOH . A HOH 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc6 F MG MG . A MG 180 1_555 I O HOH . A HOH 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc7 C OG1 THR 17 C THR 17 1_555 H MG MG . C MG 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.893 ? metalc ? metalc8 C OG1 THR 35 C THR 35 1_555 H MG MG . C MG 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? metalc ? metalc9 G O2G GNP . C GNP 179 1_555 H MG MG . C MG 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc10 G O2B GNP . C GNP 179 1_555 H MG MG . C MG 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc11 H MG MG . C MG 180 1_555 K O HOH . C HOH 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc12 H MG MG . C MG 180 1_555 K O HOH . C HOH 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? # _chem_comp.formula 'C10 H17 N6 O13 P3' _chem_comp.formula_weight 522.196 _chem_comp.id GNP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GNP doub 129 n n PG O2G GNP sing 130 n n PG O3G GNP sing 131 n n PG N3B GNP sing 132 n n O2G HOG2 GNP sing 133 n n O3G HOG3 GNP sing 134 n n N3B PB GNP sing 135 n n N3B HNB3 GNP sing 136 n n PB O1B GNP doub 137 n n PB O2B GNP sing 138 n n PB O3A GNP sing 139 n n O2B HOB2 GNP sing 140 n n O3A PA GNP sing 141 n n PA O1A GNP doub 142 n n PA O2A GNP sing 143 n n PA O5' GNP sing 144 n n O2A HOA2 GNP sing 145 n n O5' C5' GNP sing 146 n n C5' C4' GNP sing 147 n n C5' "H5'2" GNP sing 148 n n C5' "H5'1" GNP sing 149 n n C4' O4' GNP sing 150 n n C4' C3' GNP sing 151 n n C4' H4' GNP sing 152 n n O4' C1' GNP sing 153 n n C3' O3' GNP sing 154 n n C3' C2' GNP sing 155 n n C3' H3' GNP sing 156 n n O3' HO3' GNP sing 157 n n C2' O2' GNP sing 158 n n C2' C1' GNP sing 159 n n C2' H2' GNP sing 160 n n O2' HO2' GNP sing 161 n n C1' N9 GNP sing 162 n n C1' H1' GNP sing 163 n n N9 C8 GNP sing 164 n y N9 C4 GNP sing 165 n y C8 N7 GNP doub 166 n y C8 H8 GNP sing 167 n n N7 C5 GNP sing 168 n y C5 C6 GNP sing 169 n y C5 C4 GNP doub 170 n y C6 O6 GNP doub 171 n n C6 N1 GNP sing 172 n y N1 C2 GNP sing 173 n y N1 HN1 GNP sing 174 n n C2 N2 GNP sing 175 n n C2 N3 GNP doub 176 n y N2 HN21 GNP sing 177 n n N2 HN22 GNP sing 178 n n N3 C4 GNP sing 179 n y # _atom_sites.entry_id 3EG5 _atom_sites.fract_transf_matrix[1][1] 0.014031 _atom_sites.fract_transf_matrix[1][2] 0.008101 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016202 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004082 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GNP A 1 179 1 GNP GNP . F 4 MG A 1 180 2 MG MG . G 3 GNP C 1 179 1 GNP GNP . H 4 MG C 1 180 2 MG MG . I 5 HOH A 1 181 9 HOH HOH . I 5 HOH A 2 182 18 HOH HOH . I 5 HOH A 3 183 23 HOH HOH . I 5 HOH A 4 184 35 HOH HOH . I 5 HOH A 5 185 36 HOH HOH . I 5 HOH A 6 186 37 HOH HOH . I 5 HOH A 7 187 38 HOH HOH . I 5 HOH A 8 188 43 HOH HOH . I 5 HOH A 9 189 44 HOH HOH . I 5 HOH A 10 190 45 HOH HOH . I 5 HOH A 11 191 47 HOH HOH . I 5 HOH A 12 192 49 HOH HOH . I 5 HOH A 13 193 54 HOH HOH . I 5 HOH A 14 194 57 HOH HOH . I 5 HOH A 15 195 58 HOH HOH . J 5 HOH B 1 27 27 HOH HOH . J 5 HOH B 2 53 53 HOH HOH . J 5 HOH B 3 55 55 HOH HOH . J 5 HOH B 4 56 56 HOH HOH . J 5 HOH B 5 58 58 HOH HOH . J 5 HOH B 6 64 64 HOH HOH . J 5 HOH B 7 67 67 HOH HOH . K 5 HOH C 1 181 6 HOH HOH . K 5 HOH C 2 182 68 HOH HOH . K 5 HOH C 3 183 69 HOH HOH . K 5 HOH C 4 184 70 HOH HOH . K 5 HOH C 5 185 71 HOH HOH . K 5 HOH C 6 186 74 HOH HOH . K 5 HOH C 7 187 75 HOH HOH . K 5 HOH C 8 188 82 HOH HOH . K 5 HOH C 9 189 84 HOH HOH . K 5 HOH C 10 190 85 HOH HOH . K 5 HOH C 11 191 86 HOH HOH . K 5 HOH C 12 192 87 HOH HOH . K 5 HOH C 13 193 89 HOH HOH . K 5 HOH C 14 194 90 HOH HOH . K 5 HOH C 15 195 94 HOH HOH . L 5 HOH D 1 452 11 HOH HOH . L 5 HOH D 2 453 81 HOH HOH . L 5 HOH D 3 454 95 HOH HOH . L 5 HOH D 4 455 96 HOH HOH . L 5 HOH D 5 456 101 HOH HOH . L 5 HOH D 6 457 103 HOH HOH . L 5 HOH D 7 458 104 HOH HOH . L 5 HOH D 8 459 105 HOH HOH . L 5 HOH D 9 460 106 HOH HOH . L 5 HOH D 10 461 107 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GNP . . . G 3 -71.275 37.811 -71.861 1 38.06 ? PG GNP 179 C 1 HETATM 2 O O1G GNP . . . G 3 -70.169 38.828 -71.717 1 38.2 ? O1G GNP 179 C 1 HETATM 3 O O2G GNP . . . G 3 -71.709 37.543 -73.276 1 39.02 ? O2G GNP 179 C 1 HETATM 4 O O3G GNP . . . G 3 -72.338 38.316 -70.911 1 36.31 ? O3G GNP 179 C 1 HETATM 5 N N3B GNP . . . G 3 -70.745 36.406 -71.323 1 38.37 ? N3B GNP 179 C 1 HETATM 6 P PB GNP . . . G 3 -71.608 35.078 -71.197 1 38.01 ? PB GNP 179 C 1 HETATM 7 O O1B GNP . . . G 3 -72.243 34.986 -69.874 1 37.07 ? O1B GNP 179 C 1 HETATM 8 O O2B GNP . . . G 3 -72.448 35.04 -72.413 1 37.61 ? O2B GNP 179 C 1 HETATM 9 O O3A GNP . . . G 3 -70.669 33.869 -71.155 1 41.34 ? O3A GNP 179 C 1 HETATM 10 P PA GNP . . . G 3 -70.396 32.883 -72.299 1 43.23 ? PA GNP 179 C 1 HETATM 11 O O1A GNP . . . G 3 -71.631 32.079 -72.503 1 43.33 ? O1A GNP 179 C 1 HETATM 12 O O2A GNP . . . G 3 -69.883 33.574 -73.503 1 41.09 ? O2A GNP 179 C 1 HETATM 13 O O5' GNP . . . G 3 -69.28 31.905 -71.748 1 43.5 ? O5' GNP 179 C 1 HETATM 14 C C5' GNP . . . G 3 -68.032 32.382 -71.231 1 45.58 ? C5' GNP 179 C 1 HETATM 15 C C4' GNP . . . G 3 -66.998 31.268 -71.073 1 46.86 ? C4' GNP 179 C 1 HETATM 16 O O4' GNP . . . G 3 -67.452 30.299 -70.093 1 47.21 ? O4' GNP 179 C 1 HETATM 17 C C3' GNP . . . G 3 -66.631 30.482 -72.33 1 47.68 ? C3' GNP 179 C 1 HETATM 18 O O3' GNP . . . G 3 -65.223 30.469 -72.495 1 49.69 ? O3' GNP 179 C 1 HETATM 19 C C2' GNP . . . G 3 -67.127 29.065 -72.067 1 48.04 ? C2' GNP 179 C 1 HETATM 20 O O2' GNP . . . G 3 -66.213 28.077 -72.498 1 49.45 ? O2' GNP 179 C 1 HETATM 21 C C1' GNP . . . G 3 -67.249 28.981 -70.552 1 47.17 ? C1' GNP 179 C 1 HETATM 22 N N9 GNP . . . G 3 -68.39 28.161 -70.149 1 47.23 ? N9 GNP 179 C 1 HETATM 23 C C8 GNP . . . G 3 -69.717 28.462 -70.349 1 46.91 ? C8 GNP 179 C 1 HETATM 24 N N7 GNP . . . G 3 -70.537 27.558 -69.892 1 46.95 ? N7 GNP 179 C 1 HETATM 25 C C5 GNP . . . G 3 -69.71 26.584 -69.359 1 47.11 ? C5 GNP 179 C 1 HETATM 26 C C6 GNP . . . G 3 -70.044 25.362 -68.726 1 46.94 ? C6 GNP 179 C 1 HETATM 27 O O6 GNP . . . G 3 -71.165 24.886 -68.507 1 47.15 ? O6 GNP 179 C 1 HETATM 28 N N1 GNP . . . G 3 -68.913 24.66 -68.326 1 46.51 ? N1 GNP 179 C 1 HETATM 29 C C2 GNP . . . G 3 -67.63 25.092 -68.517 1 46.61 ? C2 GNP 179 C 1 HETATM 30 N N2 GNP . . . G 3 -66.686 24.266 -68.058 1 47.32 ? N2 GNP 179 C 1 HETATM 31 N N3 GNP . . . G 3 -67.29 26.236 -69.105 1 46.44 ? N3 GNP 179 C 1 HETATM 32 C C4 GNP . . . G 3 -68.379 26.937 -69.506 1 47.34 ? C4 GNP 179 C 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #