data_3EGK
#
_model_server_result.job_id            RViB2BwHCz0F4oU3D9w7Bw 
_model_server_result.datetime_utc      '2024-11-01 03:34:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3egk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":601}' 
#
_entry.id    3EGK 
#
_exptl.entry_id    3EGK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              410.892 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '{(2S)-1-[N-(tert-butoxycarbonyl)glycyl]pyrrolidin-2-yl}methyl (3-chlorophenyl)acetate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.52 
_cell.angle_gamma         90 
_cell.entry_id            3EGK 
_cell.length_a            70.2 
_cell.length_b            71.43 
_cell.length_c            72.58 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3EGK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 9 L CYS 1 1_555 B SG CYS 119 H CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf2 B SG CYS 28 H CYS 42 1_555 B SG CYS 44 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf3 B SG CYS 173 H CYS 168 1_555 B SG CYS 187 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf4 B SG CYS 201 H CYS 191 1_555 B SG CYS 231 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
covale ? covale1 C C GLU 9 I GLU 62 1_555 C N TYS 10 I TYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
#
_chem_comp.formula           'C20 H27 Cl N2 O5' 
_chem_comp.formula_weight    410.892 
_chem_comp.id                M18 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '{(2S)-1-[N-(tert-butoxycarbonyl)glycyl]pyrrolidin-2-yl}methyl (3-chlorophenyl)acetate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '(3-Chloro-Phenyl)-acetic acid (S)-1-(2-tert-butoxycarbonylamino-acetyl)-pyrrolidin-2-ylmethyl ester' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 M18 sing 218 n n 
C1 C15 M18 sing 219 n n 
C2 O1 M18 doub 220 n n 
C2 O2 M18 sing 221 n n 
O2 C3 M18 sing 222 n n 
C3 C4 M18 sing 223 n n 
C4 C5 M18 sing 224 n n 
C4 N1 M18 sing 225 n n 
C5 C6 M18 sing 226 n n 
C6 C7 M18 sing 227 n n 
C7 N1 M18 sing 228 n n 
N1 C8 M18 sing 229 n n 
C8 C9 M18 sing 230 n n 
C8 O5 M18 doub 231 n n 
C9 N2 M18 sing 232 n n 
N2 C10 M18 sing 233 n n 
C10 O3 M18 sing 234 n n 
C10 O4 M18 doub 235 n n 
O3 C11 M18 sing 236 n n 
C11 C12 M18 sing 237 n n 
C11 C13 M18 sing 238 n n 
C11 C14 M18 sing 239 n n 
C15 C16 M18 doub 240 n y 
C15 C20 M18 sing 241 n y 
C16 C17 M18 sing 242 n y 
C17 CL1 M18 sing 243 n n 
C17 C18 M18 doub 244 n y 
C18 C19 M18 sing 245 n y 
C19 C20 M18 doub 246 n y 
C1 H1 M18 sing 247 n n 
C1 H1A M18 sing 248 n n 
C3 H3 M18 sing 249 n n 
C3 H3A M18 sing 250 n n 
C4 H4 M18 sing 251 n n 
C5 H5 M18 sing 252 n n 
C5 H5A M18 sing 253 n n 
C6 H6 M18 sing 254 n n 
C6 H6A M18 sing 255 n n 
C7 H7 M18 sing 256 n n 
C7 H7A M18 sing 257 n n 
C9 H9 M18 sing 258 n n 
C9 H9A M18 sing 259 n n 
N2 HN2 M18 sing 260 n n 
C12 H12 M18 sing 261 n n 
C12 H12A M18 sing 262 n n 
C12 H12B M18 sing 263 n n 
C13 H13 M18 sing 264 n n 
C13 H13A M18 sing 265 n n 
C13 H13B M18 sing 266 n n 
C14 H14 M18 sing 267 n n 
C14 H14A M18 sing 268 n n 
C14 H14B M18 sing 269 n n 
C16 H16 M18 sing 270 n n 
C18 H18 M18 sing 271 n n 
C19 H19 M18 sing 272 n n 
C20 H20 M18 sing 273 n n 
#
_atom_sites.entry_id                     3EGK 
_atom_sites.fract_transf_matrix[1][1]    0.014245 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002645 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013999 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014013 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 M18 H 1 601 601 M18 M18 . 
E 5 NA H 1 602 602 NA NA . 
F 5 NA H 1 603 603 NA NA . 
G 6 HOH L 1 1008 1008 HOH HOH . 
G 6 HOH L 2 1009 1009 HOH HOH . 
G 6 HOH L 3 1026 1026 HOH HOH . 
G 6 HOH L 4 1035 1035 HOH HOH . 
G 6 HOH L 5 1044 1044 HOH HOH . 
G 6 HOH L 6 1050 1050 HOH HOH . 
G 6 HOH L 7 1058 1058 HOH HOH . 
G 6 HOH L 8 1059 1059 HOH HOH . 
G 6 HOH L 9 1072 1072 HOH HOH . 
G 6 HOH L 10 1084 1084 HOH HOH . 
G 6 HOH L 11 1101 1101 HOH HOH . 
G 6 HOH L 12 1106 1106 HOH HOH . 
G 6 HOH L 13 1116 1116 HOH HOH . 
H 6 HOH H 1 1001 1001 HOH HOH . 
H 6 HOH H 2 1002 1002 HOH HOH . 
H 6 HOH H 3 1003 1003 HOH HOH . 
H 6 HOH H 4 1004 1004 HOH HOH . 
H 6 HOH H 5 1005 1005 HOH HOH . 
H 6 HOH H 6 1006 1006 HOH HOH . 
H 6 HOH H 7 1007 1007 HOH HOH . 
H 6 HOH H 8 1010 1010 HOH HOH . 
H 6 HOH H 9 1011 1011 HOH HOH . 
H 6 HOH H 10 1012 1012 HOH HOH . 
H 6 HOH H 11 1013 1013 HOH HOH . 
H 6 HOH H 12 1014 1014 HOH HOH . 
H 6 HOH H 13 1015 1015 HOH HOH . 
H 6 HOH H 14 1016 1016 HOH HOH . 
H 6 HOH H 15 1017 1017 HOH HOH . 
H 6 HOH H 16 1018 1018 HOH HOH . 
H 6 HOH H 17 1019 1019 HOH HOH . 
H 6 HOH H 18 1020 1020 HOH HOH . 
H 6 HOH H 19 1021 1021 HOH HOH . 
H 6 HOH H 20 1022 1022 HOH HOH . 
H 6 HOH H 21 1023 1023 HOH HOH . 
H 6 HOH H 22 1024 1024 HOH HOH . 
H 6 HOH H 23 1025 1025 HOH HOH . 
H 6 HOH H 24 1027 1027 HOH HOH . 
H 6 HOH H 25 1028 1028 HOH HOH . 
H 6 HOH H 26 1029 1029 HOH HOH . 
H 6 HOH H 27 1030 1030 HOH HOH . 
H 6 HOH H 28 1031 1031 HOH HOH . 
H 6 HOH H 29 1032 1032 HOH HOH . 
H 6 HOH H 30 1033 1033 HOH HOH . 
H 6 HOH H 31 1034 1034 HOH HOH . 
H 6 HOH H 32 1036 1036 HOH HOH . 
H 6 HOH H 33 1037 1037 HOH HOH . 
H 6 HOH H 34 1038 1038 HOH HOH . 
H 6 HOH H 35 1039 1039 HOH HOH . 
H 6 HOH H 36 1040 1040 HOH HOH . 
H 6 HOH H 37 1041 1041 HOH HOH . 
H 6 HOH H 38 1042 1042 HOH HOH . 
H 6 HOH H 39 1043 1043 HOH HOH . 
H 6 HOH H 40 1045 1045 HOH HOH . 
H 6 HOH H 41 1046 1046 HOH HOH . 
H 6 HOH H 42 1047 1047 HOH HOH . 
H 6 HOH H 43 1048 1048 HOH HOH . 
H 6 HOH H 44 1049 1049 HOH HOH . 
H 6 HOH H 45 1051 1051 HOH HOH . 
H 6 HOH H 46 1052 1052 HOH HOH . 
H 6 HOH H 47 1053 1053 HOH HOH . 
H 6 HOH H 48 1054 1054 HOH HOH . 
H 6 HOH H 49 1055 1055 HOH HOH . 
H 6 HOH H 50 1056 1056 HOH HOH . 
H 6 HOH H 51 1057 1057 HOH HOH . 
H 6 HOH H 52 1060 1060 HOH HOH . 
H 6 HOH H 53 1061 1061 HOH HOH . 
H 6 HOH H 54 1062 1062 HOH HOH . 
H 6 HOH H 55 1063 1063 HOH HOH . 
H 6 HOH H 56 1064 1064 HOH HOH . 
H 6 HOH H 57 1065 1065 HOH HOH . 
H 6 HOH H 58 1066 1066 HOH HOH . 
H 6 HOH H 59 1067 1067 HOH HOH . 
H 6 HOH H 60 1068 1068 HOH HOH . 
H 6 HOH H 61 1069 1069 HOH HOH . 
H 6 HOH H 62 1070 1070 HOH HOH . 
H 6 HOH H 63 1071 1071 HOH HOH . 
H 6 HOH H 64 1073 1073 HOH HOH . 
H 6 HOH H 65 1074 1074 HOH HOH . 
H 6 HOH H 66 1075 1075 HOH HOH . 
H 6 HOH H 67 1076 1076 HOH HOH . 
H 6 HOH H 68 1077 1077 HOH HOH . 
H 6 HOH H 69 1078 1078 HOH HOH . 
H 6 HOH H 70 1079 1079 HOH HOH . 
H 6 HOH H 71 1080 1080 HOH HOH . 
H 6 HOH H 72 1081 1081 HOH HOH . 
H 6 HOH H 73 1082 1082 HOH HOH . 
H 6 HOH H 74 1083 1083 HOH HOH . 
H 6 HOH H 75 1085 1085 HOH HOH . 
H 6 HOH H 76 1086 1086 HOH HOH . 
H 6 HOH H 77 1087 1087 HOH HOH . 
H 6 HOH H 78 1088 1088 HOH HOH . 
H 6 HOH H 79 1089 1089 HOH HOH . 
H 6 HOH H 80 1090 1090 HOH HOH . 
H 6 HOH H 81 1091 1091 HOH HOH . 
H 6 HOH H 82 1092 1092 HOH HOH . 
H 6 HOH H 83 1093 1093 HOH HOH . 
H 6 HOH H 84 1094 1094 HOH HOH . 
H 6 HOH H 85 1095 1095 HOH HOH . 
H 6 HOH H 86 1096 1096 HOH HOH . 
H 6 HOH H 87 1097 1097 HOH HOH . 
H 6 HOH H 88 1098 1098 HOH HOH . 
H 6 HOH H 89 1099 1099 HOH HOH . 
H 6 HOH H 90 1100 1100 HOH HOH . 
H 6 HOH H 91 1102 1102 HOH HOH . 
H 6 HOH H 92 1103 1103 HOH HOH . 
H 6 HOH H 93 1104 1104 HOH HOH . 
H 6 HOH H 94 1105 1105 HOH HOH . 
H 6 HOH H 95 1107 1107 HOH HOH . 
H 6 HOH H 96 1108 1108 HOH HOH . 
H 6 HOH H 97 1109 1109 HOH HOH . 
H 6 HOH H 98 1110 1110 HOH HOH . 
H 6 HOH H 99 1111 1111 HOH HOH . 
H 6 HOH H 100 1112 1112 HOH HOH . 
H 6 HOH H 101 1113 1113 HOH HOH . 
H 6 HOH H 102 1114 1114 HOH HOH . 
H 6 HOH H 103 1115 1115 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 M18 . . . D 4 13.934 -10.417 20.629 1 13.76 ? C1 M18 601 H 1 
HETATM 2 C C2 M18 . . . D 4 14.919 -11.526 20.801 1 29.26 ? C2 M18 601 H 1 
HETATM 3 O O1 M18 . . . D 4 15.084 -12.319 22.104 1 49.9 ? O1 M18 601 H 1 
HETATM 4 O O2 M18 . . . D 4 15.686 -11.785 19.664 1 34.09 ? O2 M18 601 H 1 
HETATM 5 C C3 M18 . . . D 4 16.492 -12.976 19.751 1 31.67 ? C3 M18 601 H 1 
HETATM 6 C C4 M18 . . . D 4 17.727 -12.707 20.653 1 30.45 ? C4 M18 601 H 1 
HETATM 7 C C5 M18 . . . D 4 18.718 -11.707 20.008 1 24.32 ? C5 M18 601 H 1 
HETATM 8 C C6 M18 . . . D 4 20.129 -12.211 20.377 1 25.46 ? C6 M18 601 H 1 
HETATM 9 C C7 M18 . . . D 4 19.97 -13.745 20.334 1 26.23 ? C7 M18 601 H 1 
HETATM 10 N N1 M18 . . . D 4 18.581 -13.893 20.755 1 30.47 ? N1 M18 601 H 1 
HETATM 11 C C8 M18 . . . D 4 18.218 -15.019 21.44 1 38.2 ? C8 M18 601 H 1 
HETATM 12 C C9 M18 . . . D 4 19.174 -16.194 21.606 1 38.4 ? C9 M18 601 H 1 
HETATM 13 N N2 M18 . . . D 4 19.979 -16.054 22.817 1 41.54 ? N2 M18 601 H 1 
HETATM 14 C C10 M18 . . . D 4 19.376 -16.183 24.018 1 53.75 ? C10 M18 601 H 1 
HETATM 15 O O3 M18 . . . D 4 19.733 -15.294 24.94 1 62.62 ? O3 M18 601 H 1 
HETATM 16 C C11 M18 . . . D 4 20.241 -14.069 24.797 1 57.31 ? C11 M18 601 H 1 
HETATM 17 C C12 M18 . . . D 4 19.923 -13.364 26.121 1 68.95 ? C12 M18 601 H 1 
HETATM 18 C C13 M18 . . . D 4 21.747 -14.27 24.678 1 24.26 ? C13 M18 601 H 1 
HETATM 19 C C14 M18 . . . D 4 19.788 -13.195 23.688 1 53.88 ? C14 M18 601 H 1 
HETATM 20 O O4 M18 . . . D 4 18.554 -17.072 24.237 1 40.77 ? O4 M18 601 H 1 
HETATM 21 O O5 M18 . . . D 4 17.336 -14.983 22.293 1 30.26 ? O5 M18 601 H 1 
HETATM 22 C C15 M18 . . . D 4 12.897 -10.295 21.752 1 8.96 ? C15 M18 601 H 1 
HETATM 23 C C16 M18 . . . D 4 12.951 -9.185 22.603 1 16.6 ? C16 M18 601 H 1 
HETATM 24 C C17 M18 . . . D 4 12.035 -9.04 23.652 1 23.48 ? C17 M18 601 H 1 
HETATM 25 CL CL1 M18 . . . D 4 12.126 -7.628 24.694 1 23.09 ? CL1 M18 601 H 1 
HETATM 26 C C18 M18 . . . D 4 11.017 -9.982 23.815 1 15.31 ? C18 M18 601 H 1 
HETATM 27 C C19 M18 . . . D 4 10.972 -11.102 22.98 1 20.44 ? C19 M18 601 H 1 
HETATM 28 C C20 M18 . . . D 4 11.922 -11.278 21.962 1 10.88 ? C20 M18 601 H 1 
#
_model_server_stats.io_time_ms              69 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           320 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           28 
#