data_3EH5
#
_model_server_result.job_id            AKxrU7vDdVqnEdwzzehwrg 
_model_server_result.datetime_utc      '2025-07-13 03:27:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3eh5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":803}' 
#
_entry.id    3EH5 
#
_exptl.entry_id    3EH5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              63.546 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'COPPER (I) ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3EH5 
_cell.length_a            115.631 
_cell.length_b            115.631 
_cell.length_c            149.169 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3EH5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 software_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M,N 1 1 
A,D,E,F,G,H,I,L 2 1 
B,J,M 3 1 
C,K,N 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 128 A HIS 72 1_555 E FE HEM . A HEM 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? 
metalc ? metalc2 A ND1 HIS 289 A HIS 233 1_555 D CU CU1 . A CU1 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? 
metalc ? metalc3 A NE2 HIS 338 A HIS 282 1_555 D CU CU1 . A CU1 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.943 ? 
metalc ? metalc4 A NE2 HIS 339 A HIS 283 1_555 D CU CU1 . A CU1 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? 
metalc ? metalc5 A NE2 HIS 440 A HIS 384 1_555 F FE HAS . A HAS 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? 
metalc ? metalc6 A NE2 HIS 442 A HIS 386 1_555 E FE HEM . A HEM 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? 
metalc ? metalc7 B ND1 HIS 112 B HIS 114 1_555 J CU2 CUA . B CUA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? 
metalc ? metalc8 B ND1 HIS 155 B HIS 157 1_555 J CU1 CUA . B CUA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
#
_chem_comp.formula           'Cu 1' 
_chem_comp.formula_weight    63.546 
_chem_comp.id                CU1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'COPPER (I) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3EH5 
_atom_sites.fract_transf_matrix[1][1]    0.008648 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008648 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006704 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 CU1 A 1 803 803 CU1 CU1 . 
E 5 HEM A 1 800 800 HEM HEM . 
F 6 HAS A 1 801 801 HAS HAS . 
G 7 BNG A 1 805 805 BNG BNG . 
H 7 BNG A 1 806 806 BNG BNG . 
I 7 BNG A 1 807 807 BNG BNG . 
J 8 CUA B 1 802 802 CUA CUA . 
K 7 BNG C 1 804 804 BNG BNG . 
L 9 HOH A 1 563 1 HOH HOH . 
L 9 HOH A 2 564 2 HOH HOH . 
L 9 HOH A 3 565 3 HOH HOH . 
L 9 HOH A 4 566 4 HOH HOH . 
L 9 HOH A 5 567 5 HOH HOH . 
L 9 HOH A 6 568 6 HOH HOH . 
L 9 HOH A 7 569 7 HOH HOH . 
L 9 HOH A 8 570 8 HOH HOH . 
L 9 HOH A 9 571 9 HOH HOH . 
L 9 HOH A 10 572 10 HOH HOH . 
L 9 HOH A 11 573 11 HOH HOH . 
L 9 HOH A 12 574 13 HOH HOH . 
L 9 HOH A 13 575 15 HOH HOH . 
L 9 HOH A 14 576 16 HOH HOH . 
L 9 HOH A 15 577 17 HOH HOH . 
L 9 HOH A 16 578 19 HOH HOH . 
L 9 HOH A 17 579 20 HOH HOH . 
L 9 HOH A 18 580 21 HOH HOH . 
L 9 HOH A 19 581 22 HOH HOH . 
L 9 HOH A 20 582 23 HOH HOH . 
L 9 HOH A 21 583 24 HOH HOH . 
L 9 HOH A 22 584 25 HOH HOH . 
L 9 HOH A 23 585 27 HOH HOH . 
L 9 HOH A 24 586 28 HOH HOH . 
L 9 HOH A 25 587 30 HOH HOH . 
L 9 HOH A 26 588 31 HOH HOH . 
L 9 HOH A 27 589 32 HOH HOH . 
L 9 HOH A 28 590 33 HOH HOH . 
L 9 HOH A 29 591 34 HOH HOH . 
L 9 HOH A 30 592 35 HOH HOH . 
L 9 HOH A 31 593 36 HOH HOH . 
L 9 HOH A 32 594 37 HOH HOH . 
L 9 HOH A 33 595 38 HOH HOH . 
L 9 HOH A 34 596 39 HOH HOH . 
L 9 HOH A 35 597 40 HOH HOH . 
L 9 HOH A 36 598 41 HOH HOH . 
L 9 HOH A 37 599 42 HOH HOH . 
L 9 HOH A 38 600 44 HOH HOH . 
L 9 HOH A 39 601 45 HOH HOH . 
L 9 HOH A 40 602 46 HOH HOH . 
L 9 HOH A 41 603 47 HOH HOH . 
L 9 HOH A 42 604 51 HOH HOH . 
L 9 HOH A 43 605 52 HOH HOH . 
L 9 HOH A 44 606 57 HOH HOH . 
L 9 HOH A 45 607 58 HOH HOH . 
L 9 HOH A 46 608 59 HOH HOH . 
L 9 HOH A 47 609 60 HOH HOH . 
L 9 HOH A 48 610 61 HOH HOH . 
L 9 HOH A 49 611 62 HOH HOH . 
L 9 HOH A 50 612 63 HOH HOH . 
L 9 HOH A 51 613 64 HOH HOH . 
L 9 HOH A 52 614 66 HOH HOH . 
L 9 HOH A 53 615 67 HOH HOH . 
L 9 HOH A 54 616 72 HOH HOH . 
L 9 HOH A 55 617 75 HOH HOH . 
L 9 HOH A 56 618 76 HOH HOH . 
L 9 HOH A 57 619 77 HOH HOH . 
L 9 HOH A 58 620 78 HOH HOH . 
L 9 HOH A 59 621 79 HOH HOH . 
L 9 HOH A 60 622 80 HOH HOH . 
L 9 HOH A 61 623 81 HOH HOH . 
L 9 HOH A 62 624 82 HOH HOH . 
L 9 HOH A 63 625 83 HOH HOH . 
M 9 HOH B 1 169 12 HOH HOH . 
M 9 HOH B 2 170 14 HOH HOH . 
M 9 HOH B 3 171 26 HOH HOH . 
M 9 HOH B 4 172 29 HOH HOH . 
M 9 HOH B 5 173 43 HOH HOH . 
M 9 HOH B 6 174 48 HOH HOH . 
M 9 HOH B 7 175 49 HOH HOH . 
M 9 HOH B 8 176 50 HOH HOH . 
M 9 HOH B 9 177 53 HOH HOH . 
M 9 HOH B 10 178 54 HOH HOH . 
M 9 HOH B 11 179 55 HOH HOH . 
M 9 HOH B 12 180 56 HOH HOH . 
M 9 HOH B 13 181 65 HOH HOH . 
M 9 HOH B 14 182 68 HOH HOH . 
M 9 HOH B 15 183 69 HOH HOH . 
M 9 HOH B 16 184 70 HOH HOH . 
M 9 HOH B 17 185 71 HOH HOH . 
M 9 HOH B 18 186 73 HOH HOH . 
M 9 HOH B 19 187 74 HOH HOH . 
N 9 HOH C 1 35 18 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CU 
_atom_site.label_atom_id         CU 
_atom_site.label_comp_id         CU1 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               -27.083 
_atom_site.Cartn_y               28.455 
_atom_site.Cartn_z               -1.833 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        80.66 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CU 
_atom_site.auth_comp_id          CU1 
_atom_site.auth_seq_id           803 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           230 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#