data_3EHA # _model_server_result.job_id hYmcSX4wyVs7AntPKCkF4w _model_server_result.datetime_utc '2024-10-11 13:30:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3eha # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3EHA # _exptl.entry_id 3EHA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3EHA _cell.length_a 46.829 _cell.length_b 62.513 _cell.length_c 88.837 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3EHA _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 3EHA _atom_sites.fract_transf_matrix[1][1] 0.021354 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015997 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011257 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ANP A 1 1 1 ANP ANP . C 3 HOH A 1 296 1 HOH HOH . C 3 HOH A 2 297 2 HOH HOH . C 3 HOH A 3 298 3 HOH HOH . C 3 HOH A 4 299 4 HOH HOH . C 3 HOH A 5 300 5 HOH HOH . C 3 HOH A 6 301 6 HOH HOH . C 3 HOH A 7 302 7 HOH HOH . C 3 HOH A 8 303 8 HOH HOH . C 3 HOH A 9 304 9 HOH HOH . C 3 HOH A 10 305 10 HOH HOH . C 3 HOH A 11 306 11 HOH HOH . C 3 HOH A 12 307 12 HOH HOH . C 3 HOH A 13 308 13 HOH HOH . C 3 HOH A 14 309 14 HOH HOH . C 3 HOH A 15 310 15 HOH HOH . C 3 HOH A 16 311 16 HOH HOH . C 3 HOH A 17 312 17 HOH HOH . C 3 HOH A 18 313 18 HOH HOH . C 3 HOH A 19 314 19 HOH HOH . C 3 HOH A 20 315 20 HOH HOH . C 3 HOH A 21 316 21 HOH HOH . C 3 HOH A 22 317 22 HOH HOH . C 3 HOH A 23 318 23 HOH HOH . C 3 HOH A 24 319 24 HOH HOH . C 3 HOH A 25 320 25 HOH HOH . C 3 HOH A 26 321 26 HOH HOH . C 3 HOH A 27 322 27 HOH HOH . C 3 HOH A 28 323 28 HOH HOH . C 3 HOH A 29 324 29 HOH HOH . C 3 HOH A 30 325 30 HOH HOH . C 3 HOH A 31 326 31 HOH HOH . C 3 HOH A 32 327 32 HOH HOH . C 3 HOH A 33 328 33 HOH HOH . C 3 HOH A 34 329 34 HOH HOH . C 3 HOH A 35 330 35 HOH HOH . C 3 HOH A 36 331 36 HOH HOH . C 3 HOH A 37 332 37 HOH HOH . C 3 HOH A 38 333 38 HOH HOH . C 3 HOH A 39 334 39 HOH HOH . C 3 HOH A 40 335 40 HOH HOH . C 3 HOH A 41 336 41 HOH HOH . C 3 HOH A 42 337 42 HOH HOH . C 3 HOH A 43 338 43 HOH HOH . C 3 HOH A 44 339 44 HOH HOH . C 3 HOH A 45 340 45 HOH HOH . C 3 HOH A 46 341 46 HOH HOH . C 3 HOH A 47 342 47 HOH HOH . C 3 HOH A 48 343 48 HOH HOH . C 3 HOH A 49 344 49 HOH HOH . C 3 HOH A 50 345 50 HOH HOH . C 3 HOH A 51 346 51 HOH HOH . C 3 HOH A 52 347 52 HOH HOH . C 3 HOH A 53 348 53 HOH HOH . C 3 HOH A 54 349 54 HOH HOH . C 3 HOH A 55 350 55 HOH HOH . C 3 HOH A 56 351 56 HOH HOH . C 3 HOH A 57 352 57 HOH HOH . C 3 HOH A 58 353 58 HOH HOH . C 3 HOH A 59 354 59 HOH HOH . C 3 HOH A 60 355 60 HOH HOH . C 3 HOH A 61 356 61 HOH HOH . C 3 HOH A 62 357 62 HOH HOH . C 3 HOH A 63 358 63 HOH HOH . C 3 HOH A 64 359 64 HOH HOH . C 3 HOH A 65 360 65 HOH HOH . C 3 HOH A 66 361 66 HOH HOH . C 3 HOH A 67 362 67 HOH HOH . C 3 HOH A 68 363 68 HOH HOH . C 3 HOH A 69 364 69 HOH HOH . C 3 HOH A 70 365 70 HOH HOH . C 3 HOH A 71 366 71 HOH HOH . C 3 HOH A 72 367 72 HOH HOH . C 3 HOH A 73 368 73 HOH HOH . C 3 HOH A 74 369 74 HOH HOH . C 3 HOH A 75 370 76 HOH HOH . C 3 HOH A 76 371 77 HOH HOH . C 3 HOH A 77 372 79 HOH HOH . C 3 HOH A 78 373 80 HOH HOH . C 3 HOH A 79 374 81 HOH HOH . C 3 HOH A 80 375 82 HOH HOH . C 3 HOH A 81 376 83 HOH HOH . C 3 HOH A 82 377 84 HOH HOH . C 3 HOH A 83 378 85 HOH HOH . C 3 HOH A 84 379 86 HOH HOH . C 3 HOH A 85 380 87 HOH HOH . C 3 HOH A 86 381 88 HOH HOH . C 3 HOH A 87 382 89 HOH HOH . C 3 HOH A 88 383 90 HOH HOH . C 3 HOH A 89 384 91 HOH HOH . C 3 HOH A 90 385 92 HOH HOH . C 3 HOH A 91 386 93 HOH HOH . C 3 HOH A 92 387 94 HOH HOH . C 3 HOH A 93 388 95 HOH HOH . C 3 HOH A 94 389 96 HOH HOH . C 3 HOH A 95 390 97 HOH HOH . C 3 HOH A 96 391 98 HOH HOH . C 3 HOH A 97 392 99 HOH HOH . C 3 HOH A 98 393 100 HOH HOH . C 3 HOH A 99 394 101 HOH HOH . C 3 HOH A 100 395 102 HOH HOH . C 3 HOH A 101 396 103 HOH HOH . C 3 HOH A 102 397 104 HOH HOH . C 3 HOH A 103 398 105 HOH HOH . C 3 HOH A 104 399 106 HOH HOH . C 3 HOH A 105 400 107 HOH HOH . C 3 HOH A 106 401 108 HOH HOH . C 3 HOH A 107 402 109 HOH HOH . C 3 HOH A 108 403 110 HOH HOH . C 3 HOH A 109 404 111 HOH HOH . C 3 HOH A 110 405 112 HOH HOH . C 3 HOH A 111 406 113 HOH HOH . C 3 HOH A 112 407 114 HOH HOH . C 3 HOH A 113 408 115 HOH HOH . C 3 HOH A 114 409 116 HOH HOH . C 3 HOH A 115 410 117 HOH HOH . C 3 HOH A 116 411 118 HOH HOH . C 3 HOH A 117 412 120 HOH HOH . C 3 HOH A 118 413 121 HOH HOH . C 3 HOH A 119 414 122 HOH HOH . C 3 HOH A 120 415 123 HOH HOH . C 3 HOH A 121 416 124 HOH HOH . C 3 HOH A 122 417 125 HOH HOH . C 3 HOH A 123 418 127 HOH HOH . C 3 HOH A 124 419 128 HOH HOH . C 3 HOH A 125 420 129 HOH HOH . C 3 HOH A 126 421 130 HOH HOH . C 3 HOH A 127 422 131 HOH HOH . C 3 HOH A 128 423 132 HOH HOH . C 3 HOH A 129 424 133 HOH HOH . C 3 HOH A 130 425 134 HOH HOH . C 3 HOH A 131 426 135 HOH HOH . C 3 HOH A 132 427 136 HOH HOH . C 3 HOH A 133 428 137 HOH HOH . C 3 HOH A 134 429 138 HOH HOH . C 3 HOH A 135 430 139 HOH HOH . C 3 HOH A 136 431 140 HOH HOH . C 3 HOH A 137 432 141 HOH HOH . C 3 HOH A 138 433 142 HOH HOH . C 3 HOH A 139 434 143 HOH HOH . C 3 HOH A 140 435 144 HOH HOH . C 3 HOH A 141 436 145 HOH HOH . C 3 HOH A 142 437 146 HOH HOH . C 3 HOH A 143 438 147 HOH HOH . C 3 HOH A 144 439 148 HOH HOH . C 3 HOH A 145 440 149 HOH HOH . C 3 HOH A 146 441 150 HOH HOH . C 3 HOH A 147 442 151 HOH HOH . C 3 HOH A 148 443 152 HOH HOH . C 3 HOH A 149 444 153 HOH HOH . C 3 HOH A 150 445 154 HOH HOH . C 3 HOH A 151 446 155 HOH HOH . C 3 HOH A 152 447 156 HOH HOH . C 3 HOH A 153 448 157 HOH HOH . C 3 HOH A 154 449 158 HOH HOH . C 3 HOH A 155 450 159 HOH HOH . C 3 HOH A 156 451 160 HOH HOH . C 3 HOH A 157 452 161 HOH HOH . C 3 HOH A 158 453 162 HOH HOH . C 3 HOH A 159 454 163 HOH HOH . C 3 HOH A 160 455 164 HOH HOH . C 3 HOH A 161 456 167 HOH HOH . C 3 HOH A 162 457 168 HOH HOH . C 3 HOH A 163 458 169 HOH HOH . C 3 HOH A 164 459 170 HOH HOH . C 3 HOH A 165 460 171 HOH HOH . C 3 HOH A 166 461 172 HOH HOH . C 3 HOH A 167 462 173 HOH HOH . C 3 HOH A 168 463 175 HOH HOH . C 3 HOH A 169 464 176 HOH HOH . C 3 HOH A 170 465 177 HOH HOH . C 3 HOH A 171 466 178 HOH HOH . C 3 HOH A 172 467 179 HOH HOH . C 3 HOH A 173 468 180 HOH HOH . C 3 HOH A 174 469 181 HOH HOH . C 3 HOH A 175 470 182 HOH HOH . C 3 HOH A 176 471 183 HOH HOH . C 3 HOH A 177 472 184 HOH HOH . C 3 HOH A 178 473 185 HOH HOH . C 3 HOH A 179 474 186 HOH HOH . C 3 HOH A 180 475 187 HOH HOH . C 3 HOH A 181 476 188 HOH HOH . C 3 HOH A 182 477 189 HOH HOH . C 3 HOH A 183 478 190 HOH HOH . C 3 HOH A 184 479 191 HOH HOH . C 3 HOH A 185 480 192 HOH HOH . C 3 HOH A 186 481 193 HOH HOH . C 3 HOH A 187 482 194 HOH HOH . C 3 HOH A 188 483 195 HOH HOH . C 3 HOH A 189 484 196 HOH HOH . C 3 HOH A 190 485 197 HOH HOH . C 3 HOH A 191 486 198 HOH HOH . C 3 HOH A 192 487 199 HOH HOH . C 3 HOH A 193 488 201 HOH HOH . C 3 HOH A 194 489 202 HOH HOH . C 3 HOH A 195 490 203 HOH HOH . C 3 HOH A 196 491 204 HOH HOH . C 3 HOH A 197 492 205 HOH HOH . C 3 HOH A 198 493 207 HOH HOH . C 3 HOH A 199 494 208 HOH HOH . C 3 HOH A 200 495 210 HOH HOH . C 3 HOH A 201 496 213 HOH HOH . C 3 HOH A 202 497 216 HOH HOH . C 3 HOH A 203 498 217 HOH HOH . C 3 HOH A 204 499 218 HOH HOH . C 3 HOH A 205 500 219 HOH HOH . C 3 HOH A 206 501 222 HOH HOH . C 3 HOH A 207 502 225 HOH HOH . C 3 HOH A 208 503 226 HOH HOH . C 3 HOH A 209 504 228 HOH HOH . C 3 HOH A 210 505 229 HOH HOH . C 3 HOH A 211 506 230 HOH HOH . C 3 HOH A 212 507 231 HOH HOH . C 3 HOH A 213 508 232 HOH HOH . C 3 HOH A 214 509 233 HOH HOH . C 3 HOH A 215 510 235 HOH HOH . C 3 HOH A 216 511 239 HOH HOH . C 3 HOH A 217 512 240 HOH HOH . C 3 HOH A 218 513 241 HOH HOH . C 3 HOH A 219 514 242 HOH HOH . C 3 HOH A 220 515 244 HOH HOH . C 3 HOH A 221 516 245 HOH HOH . C 3 HOH A 222 517 246 HOH HOH . C 3 HOH A 223 518 250 HOH HOH . C 3 HOH A 224 519 251 HOH HOH . C 3 HOH A 225 520 252 HOH HOH . C 3 HOH A 226 521 254 HOH HOH . C 3 HOH A 227 522 256 HOH HOH . C 3 HOH A 228 523 260 HOH HOH . C 3 HOH A 229 524 266 HOH HOH . C 3 HOH A 230 525 267 HOH HOH . C 3 HOH A 231 526 268 HOH HOH . C 3 HOH A 232 527 269 HOH HOH . C 3 HOH A 233 528 270 HOH HOH . C 3 HOH A 234 529 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . B 2 16.3 -1.514 12.756 0.75 23.21 ? PG ANP 1 A 1 HETATM 2 O O1G ANP . . . B 2 17.593 -1.168 13.465 0.75 23.57 ? O1G ANP 1 A 1 HETATM 3 O O2G ANP . . . B 2 15.911 -2.957 13.013 0.75 24.59 ? O2G ANP 1 A 1 HETATM 4 O O3G ANP . . . B 2 15.176 -0.534 12.972 0.75 23.18 ? O3G ANP 1 A 1 HETATM 5 P PB ANP . . . B 2 17.904 -2.002 10.246 1 21.34 ? PB ANP 1 A 1 HETATM 6 O O1B ANP . . . B 2 18.159 -3.394 10.75 1 22.39 ? O1B ANP 1 A 1 HETATM 7 O O2B ANP . . . B 2 17.498 -1.848 8.787 1 22.46 ? O2B ANP 1 A 1 HETATM 8 N N3B ANP . . . B 2 16.597 -1.257 11.069 1 23.31 ? N3B ANP 1 A 1 HETATM 9 P PA ANP . . . B 2 19.59 0.39 10.828 1 16.96 ? PA ANP 1 A 1 HETATM 10 O O1A ANP . . . B 2 19.551 1.308 9.643 1 15.59 ? O1A ANP 1 A 1 HETATM 11 O O2A ANP . . . B 2 18.806 0.789 12.065 1 18.93 ? O2A ANP 1 A 1 HETATM 12 O O3A ANP . . . B 2 19.285 -1.16 10.419 1 18.52 ? O3A ANP 1 A 1 HETATM 13 O O5' ANP . . . B 2 21.126 0.237 11.226 1 16.55 ? O5' ANP 1 A 1 HETATM 14 C C5' ANP . . . B 2 21.506 -0.565 12.361 1 15.72 ? C5' ANP 1 A 1 HETATM 15 C C4' ANP . . . B 2 22.496 0.191 13.24 1 14.89 ? C4' ANP 1 A 1 HETATM 16 O O4' ANP . . . B 2 23.66 0.547 12.481 1 14.64 ? O4' ANP 1 A 1 HETATM 17 C C3' ANP . . . B 2 21.946 1.509 13.784 1 16.09 ? C3' ANP 1 A 1 HETATM 18 O O3' ANP . . . B 2 21.197 1.346 14.991 1 17.8 ? O3' ANP 1 A 1 HETATM 19 C C2' ANP . . . B 2 23.193 2.323 13.998 1 16.19 ? C2' ANP 1 A 1 HETATM 20 O O2' ANP . . . B 2 23.83 1.898 15.212 1 18.82 ? O2' ANP 1 A 1 HETATM 21 C C1' ANP . . . B 2 24.09 1.855 12.863 1 14.94 ? C1' ANP 1 A 1 HETATM 22 N N9 ANP . . . B 2 23.995 2.73 11.678 1 13.43 ? N9 ANP 1 A 1 HETATM 23 C C8 ANP . . . B 2 23.023 2.738 10.724 1 14.1 ? C8 ANP 1 A 1 HETATM 24 N N7 ANP . . . B 2 23.272 3.681 9.787 1 12.76 ? N7 ANP 1 A 1 HETATM 25 C C5 ANP . . . B 2 24.421 4.265 10.136 1 12.25 ? C5 ANP 1 A 1 HETATM 26 C C6 ANP . . . B 2 25.242 5.321 9.56 1 13.57 ? C6 ANP 1 A 1 HETATM 27 N N6 ANP . . . B 2 24.831 5.943 8.426 1 13.83 ? N6 ANP 1 A 1 HETATM 28 N N1 ANP . . . B 2 26.384 5.66 10.201 1 13.01 ? N1 ANP 1 A 1 HETATM 29 C C2 ANP . . . B 2 26.765 5.054 11.343 1 14.25 ? C2 ANP 1 A 1 HETATM 30 N N3 ANP . . . B 2 26.061 4.067 11.935 1 13.71 ? N3 ANP 1 A 1 HETATM 31 C C4 ANP . . . B 2 24.897 3.64 11.376 1 13.18 ? C4 ANP 1 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 19 _model_server_stats.element_count 31 #